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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Song, W.S."

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Search Summary

This query matches 58 Structures.

Refinements

Structure Determination Methodology

experimental (58)

Scientific Name of Source Organism

	Bacillus spizizenii str. W23 (8)
	Bacillus subtilis (6)
	Burkholderia thailandensis (4)
	Campylobacter jejuni (4)
	Bacillus spizizenii ATCC 6633 = JCM 2499 (3)
	Pectobacterium atrosepticum (3)
	Campylobacter jejuni subsp. jejuni PT14 (2)
	Escherichia coli (2)
	Escherichia coli K-12 (2)
	Gallus gallus (2)

More...

Taxonomy

	Bacteria (56)
	Eukaryota (3)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (58)

Polymer Entity Type

	Protein (58)
	DNA (3)

Refinement Resolution (Å)

	1.5 - 2.0 (23)
	2.0 - 2.5 (19)
	2.5 - 3.0 (12)
	3.0 - 3.5 (4)

Release Date

	2010 - 2014 (5)
	2015 - 2019 (27)
	2020 - 2024 (26)

Enzyme Classification Name

	Hydrolases (2)
	Lyases (1)
	Oxidoreductases (2)
	Transferases (1)

Symmetry Type

	Cyclic (43)
	Asymmetric (19)
	Dihedral (1)

SCOP Classification

	All alpha proteins (8)
	Artifacts (6)
	Alpha and beta proteins (a+b) (2)
	Alpha and beta proteins (a/b) (2)
	All beta proteins (1)

AllSelected

1 to 25 of 58 Structures

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4I5Q \| pdb_00004i5q	Download File View File

Crystal structure and catalytic mechanism for peroplasmic disulfide-bond isomerase DsbC from Salmonella enterica serovar Typhimurium

Ha, N.C., Li, J., Kim, J.S., Yoon, B.Y., Yeom, J.H., Lee, K.

(2013) J Struct Biol 183: 1-10

Released	2013-10-16
Method	X-RAY DIFFRACTION 1.962 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Thiol:disulfide interchange protein DsbC (protein)
Unique Ligands	MG

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4ILF \| pdb_00004ilf	Download File View File

Crystal structure of DsbC R125A from Salmonella enterica serovar Typhimurium

Ha, N.C., Li, J., Kim, J.S., Yoon, B.Y., Yeom, J.H., Lee, K.

(2013) J Struct Biol 183: 1-10

Released	2013-10-16
Method	X-RAY DIFFRACTION 1.999 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Macromolecule	Thiol:disulfide interchange protein DsbC (protein)

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4NX9 \| pdb_00004nx9	Download File View File

Crystal structure of Pseudomonas aeruginosa flagellin FliC

Song, W.S., Yoon, S.I.

(2014) Biochem Biophys Res Commun 444: 109-115

Released	2014-01-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	Flagellin (protein)

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4PON \| pdb_00004pon	Download File View File

The crystal structure of a putative SAM-dependent methyltransferase, YtqB, from Bacillus subtilis

Park, S.C., Song, W.S., Yoon, S.I.

(2014) Biochem Biophys Res Commun 446: 921-926

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus spizizenii str. W23
Macromolecule	Putative RNA methylase (protein)

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4POO \| pdb_00004poo	Download File View File

The crystal structure of Bacillus subtilis YtqB in complex with SAM

Park, S.C., Song, W.S., Yoon, S.I.

(2014) Biochem Biophys Res Commun 446: 921-926

Released	2014-04-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus spizizenii str. W23
Macromolecule	Putative RNA methylase (protein)
Unique Ligands	SAM

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4XPK \| pdb_00004xpk	Download File View File

The crystal structure of Campylobacter jejuni N-acetyltransferase PseH

Song, W.S., Nam, M.S., Namgung, B., Yoon, S.I.

(2015) Biochem Biophys Res Commun 458: 843-848

Released	2015-03-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Campylobacter jejuni subsp. jejuni PT14
Macromolecule	N-Acetyltransferase, PseH (protein)

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4XPL \| pdb_00004xpl	Download File View File

The crystal structure of Campylobacter jejuni N-acetyltransferase PseH in complex with acetyl coenzyme A

Song, W.S., Nam, M.S., Namgung, B., Yoon, S.I.

(2015) Biochem Biophys Res Commun 458: 843-848

Released	2015-03-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Campylobacter jejuni subsp. jejuni PT14
Macromolecule	N-Acetyltransferase, PseH (protein)
Unique Ligands	ACO

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5DQV \| pdb_00005dqv	Download File View File

The crystal structure of Bacillus subtilis YpgQ

Jeon, Y.J., Song, W.S., Yoon, S.I.

(2016) J Struct Biol 195: 113-122

Released	2016-04-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bacillus subtilis
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	NI

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5DQW \| pdb_00005dqw	Download File View File

The crystal structure of Bacillus subtilis YpgQ in complex with ADP

Jeon, Y.J., Song, W.S., Yoon, S.I.

(2016) J Struct Biol 195: 113-122

Released	2016-04-27
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bacillus subtilis
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	ADP, NI

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5GY2 \| pdb_00005gy2	Download File View File

Crystal structure of a complex between Bacillus subtilis flagellin and zebrafish Toll-like receptor 5

Song, W.S., Yoon, S.I.

(2017) Sci Rep 7: 40878-40878

Released	2017-02-15
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Bacillus spizizenii str. W23 Danio rerio Eptatretus burgeri
Macromolecule	Flagellin (protein) Tlr5b protein,Variable lymphocyte receptor B (protein)
Unique Ligands	NAG, PG4
Unique branched monosaccharides	NAG

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5H5T \| pdb_00005h5t	Download File View File

Crystal structure of the flagellar cap protein FliD D2-D3 domains from Salmonella Typhimurium

Song, W.S., Cho, S.Y., Hong, H.J., Yoon, S.I.

(2017) J Mol Biology 429: 847-857

Released	2017-02-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	Flagellar hook-associated protein 2 (protein)

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5H5V \| pdb_00005h5v	Download File View File

Crystal structure of the flagellar cap protein FliD D1-D2-D3 domains from Escherichia coli

Song, W.S., Cho, S.Y., Hong, H.J., Yoon, S.I.

(2017) J Mol Biology 429: 847-857

Released	2017-02-22
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	Flagellar hook-associated protein 2 (protein)

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5H5W \| pdb_00005h5w	Download File View File

Crystal structure of the flagellar cap protein FliD D2-D3 domains from Escherichia coli

Song, W.S., Cho, S.Y., Hong, H.J., Yoon, S.I.

(2017) J Mol Biology 429: 847-857

Released	2017-02-22
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Escherichia coli
Macromolecule	Flagellar hook-associated protein 2 (protein)

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5IHY \| pdb_00005ihy	Download File View File

The crystal structure of Bacillus subtilis SeMet-YpgQ

Jeon, Y.J., Song, W.S., Yoon, S.I.

(2016) J Struct Biol 195: 113-122

Released	2016-04-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus subtilis
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	NI

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5X11 \| pdb_00005x11	Download File View File

Crystal structure of Bacillus subtilis PadR in complex with operator DNA

Park, S.C., Kwak, Y.M., Song, W.S., Hong, M., Yoon, S.I.

(2017) Nucleic Acids Res 45: 13080-13093

Released	2017-11-22
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Bacillus spizizenii str. W23 synthetic construct
Macromolecule	Transcriptional regulator (protein) DNA (28-MER) (nucleic acid)

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5X12 \| pdb_00005x12	Download File View File

Crystal structure of Bacillus subtilis PadR

Park, S.C., Kwak, Y.M., Song, W.S., Hong, M., Yoon, S.I.

(2017) Nucleic Acids Res 45: 13080-13093

Released	2017-11-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus spizizenii str. W23
Macromolecule	Transcriptional regulator (protein)

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5X13 \| pdb_00005x13	Download File View File

Crystal structure of Bacillus subtilis PadR in complex with p-coumaric acid

Park, S.C., Kwak, Y.M., Song, W.S., Hong, M., Yoon, S.I.

(2017) Nucleic Acids Res 45: 13080-13093

Released	2017-11-22
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus spizizenii str. W23
Macromolecule	Transcriptional regulator (protein)
Unique Ligands	GOL, HC4

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5X14 \| pdb_00005x14	Download File View File

Crystal structure of Bacillus subtilis PadR in complex with ferulic acid

Park, S.C., Kwak, Y.M., Song, W.S., Hong, M., Yoon, S.I.

(2017) Nucleic Acids Res 45: 13080-13093

Released	2017-11-22
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Bacillus spizizenii str. W23
Macromolecule	Transcriptional regulator (protein)
Unique Ligands	FER, GOL

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5XLJ \| pdb_00005xlj	Download File View File

Crystal structure of the flagellar cap protein flid D2-D3 domains from serratia marcescens in Space group P432

Cho, S.Y., Song, W.S., Hong, H.J., Yoon, S.I.

(2017) Biochem Biophys Res Commun 489: 63-69

Released	2017-06-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Serratia marcescens
Macromolecule	Flagellar hook-associated protein 2 (protein)
Unique Ligands	CL, NA

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5XLK \| pdb_00005xlk	Download File View File

Crystal structure of the flagellar cap protein FliD D2-D3 domains from Serratia marcescens in Space group I422

Cho, S.Y., Song, W.S., Hong, H.J., Yoon, S.I.

(2017) Biochem Biophys Res Commun 489: 63-69

Released	2017-06-14
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Serratia marcescens
Macromolecule	Flagellar hook-associated protein 2 (protein)
Unique Ligands	ZN