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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Strnad, M."

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Search Summary

This query matches 26 Structures.

Refinements

Structure Determination Methodology

experimental (26)

Scientific Name of Source Organism

	Zea mays (15)
	Homo sapiens (8)
	Mycobacterium tuberculosis H37Rv (2)
	Physcomitrium patens (1)

Taxonomy

	Eukaryota (24)
	Bacteria (2)

Experimental Method

X-RAY DIFFRACTION (26)

Polymer Entity Type

	Protein (26)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (12)
	2.0 - 2.5 (12)
	3.0 - 3.5 (2)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (4)
	2010 - 2014 (3)
	2015 - 2019 (5)
	2020 - 2024 (9)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (11)
	Oxidoreductases (6)
	Hydrolases (3)

Symmetry Type

	Cyclic (11)
	Asymmetric (15)

SCOP Classification

	Alpha and beta proteins (a+b) (13)
	Artifacts (2)
	Alpha and beta proteins (a/b) (1)
	All alpha proteins (1)

AllSelected

1 to 25 of 26 Structures

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1CKP \| pdb_00001ckp	Download File View File

HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE INHIBITOR PURVALANOL B

Gray, N.S., Thunnissen, A.M.W.H., Schultz, P.G., Kim, S.H.

(1998) Science 281: 533-538

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (CYCLIN-DEPENDENT PROTEIN KINASE 2) (protein)
Unique Ligands	EDO, PVB

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1DM2 \| pdb_00001dm2	Download File View File

HUMAN CYCLIN-DEPENDENT KINASE 2 COMPLEXED WITH THE INHIBITOR HYMENIALDISINE

Thunnissen, A.M., Kim, S.-H.

(2000) Chem Biol 7: 51-63

Released	2000-05-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	CYCLIN-DEPENDENT KINASE 2 (protein)
Unique Ligands	EDO, HMD

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2A0C \| pdb_00002a0c	Download File View File

Human CDK2 in complex with olomoucine II, a novel 2,6,9-trisubstituted purine cyclin-dependent kinase inhibitor

Krystof, V., McNae, I.W., Walkinshaw, M.D., Fischer, P.M., Muller, P., Vojtesek, B., Orsag, M., Havlicek, L., Strnad, M.

(2005) Cell Mol Life Sci 62: 1763-1771

Released	2006-01-24
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Cell division protein kinase 2 (protein)
Unique Ligands	CK9

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2A4L \| pdb_00002a4l	Download File View File

Human cyclin-dependent kinase 2 in complex with roscovitine

De Azevedo Jr., W.F., Kim, S.H.

(1997) Eur J Biochem 243: 518-526

Released	2006-10-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Homo sapiens cyclin-dependent kinase 2 (protein)
Unique Ligands	RRC

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2CLX \| pdb_00002clx	Download File View File

4-Arylazo-3,5-diamino-1H-pyrazole CDK Inhibitors: SAR Study, Crystal Structure in Complex with CDK2, Selectivity, and Cellular Effects

Krystof, V., Cankar, P., Frysova, I., Slouka, J., Kontopidis, G., Dzubak, P., Hajduch, M., Deazevedo, W.F., Paprskarova, M., Orsag, M., Rolcik, J., Latr, A., Fischer, P.M., Strnad, M.

(2006) J Med Chem 49: 6500

Released	2006-11-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein)
Unique Ligands	F18

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3DQ0 \| pdb_00003dq0	Download File View File

Maize cytokinin oxidase/dehydrogenase complexed with N6-(3-methoxy-phenyl)adenine

Kopecny, D., Briozzo, P.

To be published

Released	2009-07-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Zea mays
Macromolecule	Cytokinin dehydrogenase 1 (protein)
Unique Ligands	FAD, MZO, NAG
Unique branched monosaccharides	NAG

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3PJ8 \| pdb_00003pj8	Download File View File

Structure of CDK2 in complex with a Pyrazolo[4,3-d]pyrimidine Bioisostere of Roscovitine.

McNae, I.W., Jorda, R., Havlicek, L., Strnad, M., Voller, J., Walkinshaw, M.D., Krystof, V.

(2011) J Med Chem 54: 2980-2993

Released	2011-04-06
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Homo sapiens
Macromolecule	Cell division protein kinase 2 (protein)
Unique Ligands	404

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4KPN \| pdb_00004kpn	Download File View File

Plant nucleoside hydrolase - PpNRh1 enzyme

Morera, S., Vigouroux, A., Kopecny, D.

(2013) Plant Physiol 163: 1568-1583

Released	2013-11-27
Method	X-RAY DIFFRACTION 3.35 Å
Organisms	Physcomitrium patens
Macromolecule	Nucleoside N-ribohydrolase 1 (protein)
Unique Ligands	CA

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4KPO \| pdb_00004kpo	Download File View File

Plant nucleoside hydrolase - ZmNRh3 enzyme

Morera, S., Vigouroux, A., Kopecny, D.

(2013) Plant Physiol 163: 1568-1583

Released	2013-11-27
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Zea mays
Macromolecule	Nucleoside N-ribohydrolase 3 (protein)
Unique Ligands	CA

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5HMR \| pdb_00005hmr	Download File View File

Crystal structure of maize cytokinin oxidase/dehydrogenase 4 (ZmCKO4) in complex with phenylurea inhibitor 3FMTDZ

Kopecny, D., Koncitikova, R., Briozzo, P.

(2016) Plant Mol Biol 92: 235-248

Released	2016-07-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Zea mays
Macromolecule	Cytokinin dehydrogenase 4 (protein)
Unique Ligands	FAD, FDZ

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5HQX \| pdb_00005hqx	Download File View File

Crystal structure of maize cytokinin oxidase/dehydrogenase 4 (ZmCKO4) in complex with phenylurea inhibitor HETDZ

Kopecny, D., Koncitikova, R., Briozzo, P.

(2016) Plant Mol Biol 92: 235-248

Released	2016-07-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Zea mays
Macromolecule	Cytokinin dehydrogenase 4 (protein)
Unique Ligands	EDZ, FAD

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5WM9 \| pdb_00005wm9	Download File View File

Crystal Structure of TetR family regulator Rv0078 from Mycobacterium tuberculosis

Hsu, H.C., Li, H.

(2018) mBio 9:

Released	2018-07-04
Method	X-RAY DIFFRACTION 1.85000290276 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Rv0078 (protein)
Unique Ligands	SO4

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6C31 \| pdb_00006c31	Download File View File

Crystal structure of TetR family protein Rv0078 in complex with DNA

Hsu, H.C., Li, H.

(2018) mBio 9:

Released	2018-07-04
Method	X-RAY DIFFRACTION 3 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	TetR family transcriptional regulator (protein) DNA (5'-D(GPTPTPAPCPCPGPGPCPAPGPTPCPTPGPCPTPTPGPTPAPAPA)-3') (nucleic acid) DNA (5'-D(PAPCPAPAPGPCPAPGPAPCPTPGPCPCPGPGPTPAPAP*C)-3') (nucleic acid)

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6GVA \| pdb_00006gva	Download File View File

CDK2/cyclin A2 in complex with pyrazolo[4,3-d]pyrimidine inhibitor LGR4455

Skerlova, J., Rezacova, P.

(2019) J Med Chem 62: 4606-4623

Released	2019-05-01
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-A2 (protein) Cyclin-dependent kinase 2 (protein)
Unique Ligands	BR, CL, EDO, FCQ, PG4, PGE, SGM

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6YAO \| pdb_00006yao	Download File View File

Crystal structure of ZmCKO4a in complex with inhibitor 1-[2-(2-Hydroxy-ethyl)-phenyl]-3-(3-trifluoromethoxy-phenyl)-urea

Kopecny, D., Briozzo, P., Morera, S.

(2021) J Exp Bot 72: 355-370

Released	2020-10-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Zea mays
Macromolecule	Cytokinin dehydrogenase 4 (protein)
Unique Ligands	DMS, EDO, FAD, OJ2

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6YAP \| pdb_00006yap	Download File View File

Crystal structure of ZmCKO4a in complex with inhibitor 1-(3-Chloro-5-trifluoromethoxy-phenyl)-3-[2-(2-hydroxy-ethyl)-phenyl]-urea

Kopecny, D., Briozzo, P., Morera, S.

(2021) J Exp Bot 72: 355-370

Released	2020-10-14
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Zea mays
Macromolecule	Cytokinin dehydrogenase 4 (protein)
Unique Ligands	DMS, EDO, FAD, OHZ

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6YAQ \| pdb_00006yaq	Download File View File

Crystal sttructure of ZmCKO8 in complex with inhibitor 1-(3-Chloro-5-trifluoromethoxy-phenyl)-3-[2-(2-hydroxy-ethyl)-phenyl]-urea

Kopecny, D., Briozzo, P., Morera, S.

(2021) J Exp Bot 72: 355-370

Released	2020-10-14
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Zea mays
Macromolecule	Cytokinin dehydrogenase 8 (protein)
Unique Ligands	EDO, FAD, IPA, OHZ, PEG

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6ZK1 \| pdb_00006zk1	Download File View File

Plant nucleoside hydrolase - ZmNRh2b enzyme

Morera, S., Vigouroux, A., Kopecny, D.

(2023) Plant J

Released	2022-01-12
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Zea mays
Macromolecule	Pyrimidine-specific ribonucleoside hydrolase rihA (protein)
Unique Ligands	CA, CL, EDO, GOL, PEG

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6ZK2 \| pdb_00006zk2	Download File View File

Plant nucleoside hydrolase - ZmNRh2b in complex with forodesine

Morera, S., Vigouroux, A., Kopecny, D.

(2023) Plant J

Released	2022-01-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Zea mays
Macromolecule	Pyrimidine-specific ribonucleoside hydrolase rihA (protein)
Unique Ligands	CA, DMS, EDO, IMH, PEG, PGE

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6ZK3 \| pdb_00006zk3	Download File View File

Plant nucleoside hydrolase - ZmNRh2b in complex with ribose

Morera, S., Vigouroux, A., Kopecny, D.

(2023) Plant J

Released	2022-01-12
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Zea mays
Macromolecule	Pyrimidine-specific ribonucleoside hydrolase rihA (protein)
Unique Ligands	CA, EDO, PEG, PGE, RIB

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6ZK4 \| pdb_00006zk4	Download File View File

Plant nucleoside hydrolase - ZmNRh2b with a bound adenine

Morera, S., Vigouroux, A., Kopecny, D.

(2023) Plant J

Released	2022-01-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Zea mays
Macromolecule	Pyrimidine-specific ribonucleoside hydrolase rihA (protein)
Unique Ligands	ADE, CA, EDO, PEG

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6ZK5 \| pdb_00006zk5	Download File View File

Plant nucleoside hydrolase - ZmNRh3 enzyme in complex with forodesine

Morera, S., Vigouroux, A., Kopecny, D.

(2023) Plant J

Released	2022-01-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Zea mays
Macromolecule	Nucleoside N-ribohydrolase 3 (protein)
Unique Ligands	CA, EDO, IMH, PGE

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7QHL \| pdb_00007qhl	Download File View File

Crystal structure of Cyclin-dependent kinase 2/cyclin A in complex with 3,5,7-Substituted pyrazolo[4,3-d]pyrimidine inhibitor 24

Djukic, S., Skerlova, J., Rezacova, P.

(2022) J Med Chem 65: 8881-8896

Released	2022-07-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Cyclin-A2 (protein) Cyclin-dependent kinase 2 (protein)
Unique Ligands	D5P, EDO, GOL, PEG, SGM