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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Tong, L."

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Search Summary

This query matches 969 Structures.

Refinements

Structure Determination Methodology

experimental (969)

Scientific Name of Source Organism

	Homo sapiens (215)
	Bacillus subtilis (41)
	Mus musculus (36)
	synthetic construct (35)
	Saccharomyces cerevisiae (29)
	Escherichia coli (16)
	Escherichia coli K-12 (14)
	Lactococcus lactis (13)
	Pseudomonas aeruginosa (13)
	Bacillus cereus ATCC 14579 (11)

More...

Taxonomy

	Bacteria (518)
	Eukaryota (326)
	Archaea (55)
	other sequences (35)
	Riboviria (26)
	Duplodnaviria (21)
	Eukaryota (eukaryotes) (6)
	Monodnaviria (2)

Experimental Method

	X-RAY DIFFRACTION (931)
	ELECTRON MICROSCOPY (31)
	SOLUTION NMR (7)

Polymer Entity Type

	Protein (969)
	RNA (18)

Refinement Resolution (Å)

	1.0 - 1.5 (18)
	1.5 - 2.0 (210)
	2.0 - 2.5 (369)
	2.5 - 3.0 (274)
	3.0 - 3.5 (82)
	3.5 - 4.0 (7)
	> 4.5 (2)

Release Date

	1990 - 1994 (7)
	1995 - 1999 (32)
	2000 - 2004 (117)
	2005 - 2009 (394)
	2010 - 2014 (261)
	2015 - 2019 (100)
	2020 - 2024 (58)

Enzyme Classification Name

	Hydrolases (188)
	Transferases (139)
	Ligases (65)
	Oxidoreductases (55)
	Lyases (27)
	Isomerases (14)
	Translocases (1)

Membrane Protein Annotation

	mpstruc (4)
	OPM (3)
	PDBTM (1)

Symmetry Type

	Asymmetric (504)
	Cyclic (421)
	Dihedral (141)
	Helical (2)
	Octahedral (2)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (184)
	All beta proteins (110)
	Artifacts (139)
	Alpha and beta proteins (a+b) (116)
	All alpha proteins (62)
	Coiled coil proteins (8)
	Multi-domain proteins (alpha and beta) (7)
	Small proteins (2)
	Peptides (1)

AllSelected

1 to 25 of 969 Structures

Page 1 of 39

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1AFV \| pdb_00001afv	Download File View File

HIV-1 CAPSID PROTEIN (P24) COMPLEX WITH FAB25.3

Momany, C., Kovari, L.C., Prongay, A.J., Keller, W., Gitti, R.K., Lee, B.M., Gorbalenya, A.E., Tong, L., Mcclure, J., Ehrlich, L.S., Summers, M.F., Carter, C., Rossmann, M.G.

(1996) Nat Struct Biol 3: 763-770

Released	1997-08-20
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Human immunodeficiency virus 1 Mus musculus
Macromolecule	ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) (protein) ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN) (protein) HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN (protein)
Unique Ligands	PB

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1BHF \| pdb_00001bhf	Download File View File

P56LCK SH2 DOMAIN INHIBITOR COMPLEX

Tong, L., Warren, T.C., Lukas, S., Schembri-King, J., Betageri, R., Proudfoot, J.R., Jakes, S.

(1998) J Biological Chem 273: 20238-20242

Released	1998-10-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	INHIBITOR ACE-IPA-GLU-GLU-ILE (protein) T-LYMPHOCYTE-SPECIFIC PROTEIN TYROSINE KINASE P56LCK (protein)

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1BHH \| pdb_00001bhh	Download File View File

FREE P56LCK SH2 DOMAIN

Tong, L., Warren, T.C., Lukas, S., Schembri-King, J., Betageri, R., Proudfoot, J.R., Jakes, S.

(1998) J Biological Chem 273: 20238-20242

Released	1998-10-21
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	P56 LCK TYROSINE KINASE SH2 DOMAIN (protein) T-LYMPHOCYTE-SPECIFIC PROTEIN TYROSINE KINASE P56LCK (protein)

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1BI7 \| pdb_00001bi7	Download File View File

MECHANISM OF G1 CYCLIN DEPENDENT KINASE INHIBITION FROM THE STRUCTURE OF THE CDK6-P16INK4A TUMOR SUPPRESSOR COMPLEX

Russo, A.A., Tong, L., Lee, J.O., Jeffrey, P.D., Pavletich, N.P.

(1998) Nature 395: 237-243

Released	1999-01-13
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	CYCLIN-DEPENDENT KINASE 6 (protein) MULTIPLE TUMOR SUPPRESSOR (protein)

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1BI8 \| pdb_00001bi8	Download File View File

MECHANISM OF G1 CYCLIN DEPENDENT KINASE INHIBITION FROM THE STRUCTURES CDK6-P19INK4D INHIBITOR COMPLEX

Russo, A.A., Tong, L., Lee, J.O., Jeffrey, P.D., Pavletich, N.P.

(1998) Nature 395: 237-243

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	CYCLIN-DEPENDENT KINASE 6 (protein) CYCLIN-DEPENDENT KINASE INHIBITOR (protein)

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1BIL \| pdb_00001bil	Download File View File

CRYSTALLOGRAPHIC STUDIES ON THE BINDING MODES OF P2-P3 BUTANEDIAMIDE RENIN INHIBITORS

Tong, L.

(1995) J Biological Chem 270: 29520-29524

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Renin (protein)
Unique Ligands	0IU

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1BIM \| pdb_00001bim	Download File View File

CRYSTALLOGRAPHIC STUDIES ON THE BINDING MODES OF P2-P3 BUTANEDIAMIDE RENIN INHIBITORS

Tong, L.

(1995) J Biological Chem 270: 29520-29524

Released	1996-01-29
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Renin (protein)
Unique Ligands	0QB

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1CA4 \| pdb_00001ca4	Download File View File

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 (TRAF2)

Park, Y.C., Burkitt, V., Villa, A.R., Tong, L., Wu, H.

(1999) Nature 398: 533-538

Released	1999-04-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (TNF RECEPTOR ASSOCIATED FACTOR 2) (protein)

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1CA9 \| pdb_00001ca9	Download File View File

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A PEPTIDE FROM TNF-R2

Park, Y.C., Burkitt, V., Villa, A.R., Tong, L., Wu, H.

(1999) Nature 398: 533-538

Released	1999-04-12
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (TNF RECEPTOR ASSOCIATED FACTOR 2) (protein) PROTEIN (TNF-R2) (protein)

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1COV \| pdb_00001cov	Download File View File

COXSACKIEVIRUS B3 COAT PROTEIN

Muckelbauer, J.K., Rossmann, M.G.

(1995) Acta Crystallogr D Biol Crystallogr 51: 871-887

Released	1996-03-08
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Coxsackievirus B3
Macromolecule	COXSACKIEVIRUS COAT PROTEIN (protein)
Unique Ligands	MYR, PLM

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1CZY \| pdb_00001czy	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN THE TRAF DOMAIN OF HUMAN TRAF2 AND AN LMP1 BINDING PEPTIDE

Ye, H., Park, Y.C., Kreishman, M., Kieff, E., Wu, H.

(1999) Mol Cell 4: 321-330

Released	2000-03-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Epstein-Barr virus (strain B95-8) Homo sapiens
Macromolecule	LATENT MEMBRANE PROTEIN 1 (protein) TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2 (protein)

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1CZZ \| pdb_00001czz	Download File View File

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A 17-RESIDUE CD40 PEPTIDE

Ye, H., Park, Y.C., Kreishman, M., Kieff, E., Wu, H.

(1999) Mol Cell 4: 321-330

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	CD 40 PEPTIDE (protein) TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2 (protein)

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1D00 \| pdb_00001d00	Download File View File

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A 5-RESIDUE CD40 PEPTIDE

Ye, H., Park, Y.C., Kreishman, M., Kieff, E., Wu, H.

(1999) Mol Cell 4: 321-330

Released	2000-03-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	B-CELL SURFACE ANTIGEN CD40 (protein) TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2 (protein)

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1D01 \| pdb_00001d01	Download File View File

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A HUMAN CD30 PEPTIDE

Ye, H., Park, Y.C., Kreishman, M., Kieff, E., Wu, H.

(1999) Mol Cell 4: 321-330

Released	2003-12-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	CD30 PEPTIDE (protein) TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED FACTOR 2 (protein)

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1D0A \| pdb_00001d0a	Download File View File

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 (TRAF2) IN COMPLEX WITH A HUMAN OX40 PEPTIDE

Ye, H., Park, Y.C., Kreishman, M., Kieff, E., Wu, H.

(1999) Mol Cell 4: 321-330

Released	2000-03-08
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	OX40L RECEPTOR PEPTIDE (protein) TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2 (protein)

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1D0J \| pdb_00001d0j	Download File View File

STRUCTURE OF TNF RECEPTOR ASSOCIATED FACTOR 2 IN COMPLEX WITH A M4-1BB PEPTIDE

Ye, H., Park, Y.C., Kreishman, M., Kieff, E., Wu, H.

(1999) Mol Cell 4: 321-330

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	4-1BB LIGAND RECEPTOR (protein) TUMOR NECROSIS FACTOR RECEPTOR ASSOCIATED PROTEIN 2 (protein)

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1DO8 \| pdb_00001do8	Download File View File

CRYSTAL STRUCTURE OF A CLOSED FORM OF HUMAN MITOCHONDRIAL NAD(P)+-DEPENDENT MALIC ENZYME

Yang, Z., Floyd, D.L., Loeber, G., Tong, L.

(2000) Nat Struct Biol 7: 251-257

Released	2000-03-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	MALIC ENZYME (protein)
Unique Ligands	MN, NAD, OXL

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1EFK \| pdb_00001efk	Download File View File

STRUCTURE OF HUMAN MALIC ENZYME IN COMPLEX WITH KETOMALONATE

Yang, Z., Floyd, D.L., Loeber, G., Tong, L.

(2000) Nat Struct Biol 7: 251-257

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	MALIC ENZYME (protein)
Unique Ligands	MAK, MG, NAD

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1EFL \| pdb_00001efl	Download File View File

HUMAN MALIC ENZYME IN A QUATERNARY COMPLEX WITH NAD, MG, AND TARTRONATE

Yang, Z., Floyd, D.L., Loeber, G., Tong, L.

(2000) Nat Struct Biol 7: 251-257

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	MALIC ENZYME (protein)
Unique Ligands	MG, NAD, TTN

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1EP9 \| pdb_00001ep9	Download File View File

HUMAN ORNITHINE TRANSCARBAMYLASE: CRYSTALLOGRAPHIC INSIGHTS INTO SUBSTRATE RECOGNITION AND CONFORMATIONAL CHANGE

Shi, D., Morizono, H., Yu, X., Allewell, N.M., Tuchman, M.

(2001) Biochem J 354: 501-509

Released	2001-04-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	ORNITHINE TRANSCARBAMYLASE (protein)
Unique Ligands	CP

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1FVO \| pdb_00001fvo	Download File View File

CRYSTAL STRUCTURE OF HUMAN ORNITHINE TRANSCARBAMYLASE COMPLEXED WITH CARBAMOYL PHOSPHATE

Shi, D., Morizono, H., Yu, X., Allewell, N.M., Tuchman, M.

(2001) Biochem J 354: 501-509

Released	2001-04-04
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	ORNITHINE TRANSCARBAMYLASE (protein)
Unique Ligands	CP

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1FYV \| pdb_00001fyv	Download File View File

CRYSTAL STRUCTURE OF THE TIR DOMAIN OF HUMAN TLR1

Xu, Y., Tao, X., Shen, B., Horng, T., Medzhitov, R., Manley, J.L., Tong, L.

(2000) Nature 408: 111-115

Released	2000-11-22
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	TOLL-LIKE RECEPTOR 1 (protein)

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1FYW \| pdb_00001fyw	Download File View File

CRYSTAL STRUCTURE OF THE TIR DOMAIN OF HUMAN TLR2

Xu, Y., Tao, X., Shen, B., Horng, T., Medzhitov, R., Manley, J.L., Tong, L., Northeast Structural Genomics Consortium (NESG)

(2000) Nature 408: 111-115

Released	2000-11-22
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	TOLL-LIKE RECEPTOR 2 (protein)

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1FYX \| pdb_00001fyx	Download File View File

CRYSTAL STRUCTURE OF P681H MUTANT OF TIR DOMAIN OF HUMAN TLR2

Xu, Y., Tao, X., Shen, B., Horng, T., Medzhitov, R., Manley, J.L., Tong, L.

(2000) Nature 408: 111-115

Released	2000-11-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	TOLL-LIKE RECEPTOR 2 (protein)

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1G3N \| pdb_00001g3n	Download File View File

STRUCTURE OF A P18(INK4C)-CDK6-K-CYCLIN TERNARY COMPLEX

Jeffrey, P.D., Tong, L., Pavletich, N.P.

(2000) Genes Dev 14: 3115-3125

Released	2001-01-10
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Human gammaherpesvirus 8
Macromolecule	CYCLIN-DEPENDENT KINASE 6 (protein) CYCLIN-DEPENDENT KINASE 6 INHIBITOR (protein) V-CYCLIN (protein)

1 to 25 of 969 Structures

Page 1 of 39

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AFV | pdb_00001afv

1BHF | pdb_00001bhf

1BHH | pdb_00001bhh

1BI7 | pdb_00001bi7

1BI8 | pdb_00001bi8

1BIL | pdb_00001bil

1BIM | pdb_00001bim

1CA4 | pdb_00001ca4

1CA9 | pdb_00001ca9

1COV | pdb_00001cov

1CZY | pdb_00001czy

1CZZ | pdb_00001czz

1D00 | pdb_00001d00

1D01 | pdb_00001d01

1D0A | pdb_00001d0a

1D0J | pdb_00001d0j

1DO8 | pdb_00001do8

1EFK | pdb_00001efk

1EFL | pdb_00001efl

1EP9 | pdb_00001ep9

1FVO | pdb_00001fvo

1FYV | pdb_00001fyv

1FYW | pdb_00001fyw

1FYX | pdb_00001fyx

1G3N | pdb_00001g3n