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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Venkatachalam, G."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Homo sapiens (4)
	Human immunodeficiency virus 1 (3)
	Macaca mulatta (3)
	Oryctolagus cuniculus (2)
	Haemophilus haemolyticus (1)

Taxonomy

	Eukaryota (9)
	Riboviria (3)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (7)
	ELECTRON MICROSCOPY (2)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)
	3.0 - 3.5 (1)
	3.5 - 4.0 (2)

Release Date

	2010 - 2014 (4)
	2015 - 2019 (6)

Enzyme Classification Name

Transferases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (8)
	Cyclic (2)

SCOP Classification

All beta proteins (5)

AllSelected

1 to 10 of 10 Structures

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2L9M \| pdb_00002l9m	Download File View File

Structure of cIAP1 CARD

Day, C.L., Rautureau, G.J.P., Hinds, M.G.

(2011) Mol Cell 42: 569-583

Released	2011-08-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Baculoviral IAP repeat-containing protein 2 (protein)

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4KTD \| pdb_00004ktd	Download File View File

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE136, from non-human primate

Poulsen, C., Tran, K., Standfield, R., Wyatt, R.T.

(2014) Proc Natl Acad Sci U S A 111: E738-E747

Released	2014-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Macaca mulatta
Macromolecule	GE136 Heavy Chain Fab (protein) GE136 Light Chain Fab (protein)
Unique Ligands	GOL, SO4

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4KTE \| pdb_00004kte	Download File View File

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE148, from non-human primate

Poulsen, C., Tran, K., Stanfield, R., Wyatt, R.T.

(2014) Proc Natl Acad Sci U S A 111: E738-E747

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Macaca mulatta
Macromolecule	GE148 Heavy Chain Fab (protein) GE148 Light Chain Fab (protein)
Unique Ligands	GOL, SO4

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4Q2Z \| pdb_00004q2z	Download File View File

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE356, from a non-human primate

Navis, M., Tran, K., Bale, S., Phad, G., Guenaga, J., Wilson, R., Soldemo, M., McKee, K., Sundling, C., Mascola, J., Li, Y., Wyatt, R.T., Hedestam, G.B.K.

(2014) PLoS Pathog 10: e1004337-e1004337

Released	2014-09-17
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Macaca mulatta
Macromolecule	Heavy chain of Fab fragment of HIV vaccine-elicited CD4bs-directed antibody (protein) Light chain of Fab fragment of HIV vaccine-elicited CD4bs-directed antibody (protein)

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5CD3 \| pdb_00005cd3	Download File View File

Structure of immature VRC01-class antibody DRVIA7

Kong, L., Wilson, I.A.

(2016) Immunity 44: 939-950

Released	2016-04-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	DRVIA7 Heavy Chain (protein) DRVIA7 Light Chain (protein)

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5CD5 \| pdb_00005cd5	Download File View File

Crystal structure of an immature VRC01-class antibody DRVIA7 from a Chinese donor bound to clade A/E HIV-1 gp120 core

Kong, L., Wilson, I.A.

(2016) Immunity 44: 939-950

Released	2016-04-06
Method	X-RAY DIFFRACTION 3.396 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	93TH057 HIV-1 gp120 core (protein) DRVIA7 Fab Heavy Chain (protein) DRVIA7 Fab Light Chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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6OM5 \| pdb_00006om5	Download File View File

Structure of a haemophore from Haemophilus haemolyticus

Torrado, M., Walshe, J.L., Mackay, J.P., Guss, J.M., Gell, D.A.

(2020) Mol Microbiol 113: 381-398

Released	2019-12-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Haemophilus haemolyticus
Macromolecule	haemophore (protein)
Unique Ligands	CL, GOL, HEM, SO4

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6P62 \| pdb_00006p62	Download File View File

HIV Env BG505 NFL TD+ in complex with antibody E70 fragment antigen binding

Ozorowski, G., Torres, J.L., Ward, A.B.

(2019) Immunity 51: 915-929.e7

Released	2019-11-20
Method	ELECTRON MICROSCOPY 3.57 Å
Organisms	Human immunodeficiency virus 1 Oryctolagus cuniculus
Macromolecule	HIV-1 Env BG505 NFL TD+ (protein) Rabbit monoclonal antibody E70 heavy chain fragment antigen binding (protein) Rabbit monoclonal antibody E70 kappa chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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6P65 \| pdb_00006p65	Download File View File

HIV Env 16055 NFL TD 2CC+ in complex with antibody 1C2 fragment antigen binding

Ozorowski, G., Torres, J.L., Ward, A.B.

(2019) Immunity 51: 915-929.e7

Released	2019-11-20
Method	ELECTRON MICROSCOPY 3.94 Å
Organisms	Human immunodeficiency virus 1 Oryctolagus cuniculus
Macromolecule	HIV Env 16055 NFL TD 2CC+ (protein) Rabbit antibody 1C2 heavy chain fragment antigen binding (protein) Rabbit antibody 1C2 kappa chain (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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6PEH \| pdb_00006peh	Download File View File

Crystal structure of rabbit monoclonal anti-HIV antibody 1C2

Liban, T., Pancera, M.

(2019) Immunity 51: 915-929.e7

Released	2019-11-20
Method	X-RAY DIFFRACTION 2.296 Å
Organisms	Homo sapiens
Macromolecule	1C2 Fab Heavy Chain (protein) 1C2 Fab Light Chain (protein)
Unique Ligands	SO4

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2L9M | pdb_00002l9m

Structure of cIAP1 CARD

4KTD | pdb_00004ktd

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE136, from non-human primate

4KTE | pdb_00004kte

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE148, from non-human primate

4Q2Z | pdb_00004q2z

Fab fragment of HIV vaccine-elicited CD4bs-directed antibody, GE356, from a non-human primate

5CD3 | pdb_00005cd3

Structure of immature VRC01-class antibody DRVIA7

5CD5 | pdb_00005cd5

Crystal structure of an immature VRC01-class antibody DRVIA7 from a Chinese donor bound to clade A/E HIV-1 gp120 core

6OM5 | pdb_00006om5

Structure of a haemophore from Haemophilus haemolyticus

6P62 | pdb_00006p62

HIV Env BG505 NFL TD+ in complex with antibody E70 fragment antigen binding

6P65 | pdb_00006p65

HIV Env 16055 NFL TD 2CC+ in complex with antibody 1C2 fragment antigen binding

6PEH | pdb_00006peh

Crystal structure of rabbit monoclonal anti-HIV antibody 1C2

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2L9M | pdb_00002l9m

4KTD | pdb_00004ktd

4KTE | pdb_00004kte

4Q2Z | pdb_00004q2z

5CD3 | pdb_00005cd3

5CD5 | pdb_00005cd5

6OM5 | pdb_00006om5

6P62 | pdb_00006p62

6P65 | pdb_00006p65

6PEH | pdb_00006peh