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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "White, S.A."

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Search Summary

This query matches 134 Structures.

Refinements

Structure Determination Methodology

experimental (134)

Scientific Name of Source Organism

	synthetic construct (31)
	Homo sapiens (14)
	Escherichia coli (5)
	Streptomyces (4)
	Streptomyces sp. (3)
	Streptomyces echinatus (2)
	Escherichia coli B (1)
	Mus musculus (1)
	Streptomyces parvulus (1)
	Tetrahymena thermophila (1)

Taxonomy

	other sequences (31)
	Bacteria (16)
	Eukaryota (16)

Experimental Method

	X-RAY DIFFRACTION (131)
	SOLUTION NMR (3)

Polymer Entity Type

	DNA (125)
	Protein (18)
	RNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (17)
	1.5 - 2.0 (34)
	2.0 - 2.5 (63)
	2.5 - 3.0 (14)
	3.0 - 3.5 (2)

Release Date

	1990 - 1994 (8)
	1995 - 1999 (21)
	2000 - 2004 (23)
	2005 - 2009 (26)
	2010 - 2014 (26)
	2015 - 2019 (7)
	2020 - 2024 (21)
	2025 - 2029 (2)

Enzyme Classification Name

Oxidoreductases (7)

Symmetry Type

	Asymmetric (8)
	Cyclic (11)

SCOP Classification

	Alpha and beta proteins (a+b) (6)
	Alpha and beta proteins (a/b) (1)

AllSelected

1 to 25 of 134 Structures

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102D \| pdb_0000102d	Download File View File

SEQUENCE-DEPENDENT DRUG BINDING TO THE MINOR GROOVE OF DNA: THE CRYSTAL STRUCTURE OF THE DNA DODECAMER D(CGCAAATTTGCG)2 COMPLEXED WITH PROPAMIDINE

Nunn, C.M., Neidle, S.

(1995) J Med Chem 38: 2317-2325

Released	1995-02-07
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	DNA (5'-D(CPGPCPAPAPAPTPTPTPGPCPG)-3') (nucleic acid)
Unique Ligands	TNT

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109D \| pdb_0000109d	Download File View File

VARIABILITY IN DNA MINOR GROOVE WIDTH RECOGNISED BY LIGAND BINDING: THE CRYSTAL STRUCTURE OF A BIS-BENZIMIDAZOLE COMPOUND BOUND TO THE DNA DUPLEX D(CGCGAATTCGCG)2

Czarny, A., Boykin, D.W., Wood, A.A., Nunn, C.M., Neidle, S., Zhao, M., Wilson, W.D.

(1995) Nucleic Acids Res 23: 3678-3684

Released	1995-05-08
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	DNA (5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3') (nucleic acid)
Unique Ligands	IBB, MG

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166D \| pdb_0000166d	Download File View File

DRUG-DNA MINOR GROOVE RECOGNITION: CRYSTAL STRUCTURE OF GAMMA-OXAPENTAMIDINE COMPLEXED WITH D(CGCGAATTCGCG)2

Nunn, C.M., Jenkins, T.C., Neidle, S.

(1994) Eur J Biochem 226: 953-961

Released	1994-10-15
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	DNA (5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3') (nucleic acid)
Unique Ligands	PET

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1D63 \| pdb_00001d63	Download File View File

CRYSTAL STRUCTURE OF A BERENIL-D(CGCAAATTTGCG) COMPLEX; AN EXAMPLE OF DRUG-DNA RECOGNITION BASED ON SEQUENCE-DEPENDENT STRUCTURAL FEATURES

Brown, D.G., Sanderson, M.R., Garman, E., Neidle, S.

(1992) J Mol Biology 226: 481-490

Released	1993-01-15
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	DNA (5'-D(CPGPCPAPAPAPTPTPTPGPCPG)-3') (nucleic acid)
Unique Ligands	BRN, MG

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1D64 \| pdb_00001d64	Download File View File

CRYSTAL STRUCTURE OF A PENTAMIDINE-OLIGONUCLEOTIDE COMPLEX: IMPLICATIONS FOR DNA-BINDING PROPERTIES

Edwards, K.J., Jenkins, T.C., Neidle, S.

(1992) Biochemistry 31: 7104-7109

Released	1993-01-15
Method	X-RAY DIFFRACTION 2.1 Å
Macromolecule	DNA (5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3') (nucleic acid)
Unique Ligands	PNT

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1D65 \| pdb_00001d65	Download File View File

MOLECULAR STRUCTURE OF THE B-DNA DODECAMER D(CGCAAATTTGCG)2; AN EXAMINATION OF PROPELLER TWIST AND MINOR-GROOVE WATER STRUCTURE AT 2.2 ANGSTROMS RESOLUTION

Edwards, K.J., Brown, D.G., Spink, N., Neidle, S.

(1992) J Mol Biology 226: 1161-1173

Released	1993-01-15
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	DNA (5'-D(CPGPCPAPAPAPTPTPTPGPCPG)-3') (nucleic acid)

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1D80 \| pdb_00001d80	Download File View File

CRYSTAL STRUCTURE OF AN OLIGONUCLEOTIDE DUPLEX CONTAINING G.G BASE-PAIRS: THE INFLUENCE OF MISPAIRING ON DNA BACKBONE CONFORMATION

Skelly, J.V., Edwards, K.J., Jenkins, T.C., Neidle, S.

(1993) Proc Natl Acad Sci U S A 90: 804-808

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	DNA (5'-D(CPGPCPGPAPAPTPTPGPGPCPG)-3') (nucleic acid)

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1DNM \| pdb_00001dnm	Download File View File

CRYSTAL STRUCTURE AND SEQUENCE-DEPENDENT CONFORMATION OF THE A.G MIS-PAIRED OLIGONUCLEOTIDE D(CGCAAGCTGGCG)

Webster, G.D., Sanderson, M.R., Skelly, J.V., Neidle, S., Swann, P.F., Li, B.F., Tickle, I.J.

(1990) Proc Natl Acad Sci U S A 87: 6693-6697

Released	1991-07-15
Method	X-RAY DIFFRACTION 2.5 Å
Macromolecule	DNA (5'-D(CPGPCPAPAPGPCPTPGPGPCPG)-3') (nucleic acid)

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1DS7 \| pdb_00001ds7	Download File View File

A MINOR FMN-DEPENDENT NITROREDUCTASE FROM ESCHERICHIA COLI B

Parkinson, G., Skelly, J., Neidle, S.

(2000) J Med Chem 43: 3624-3631

Released	2000-07-12
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Escherichia coli B
Macromolecule	FMN-DEPENDENT NITROREDUCTASE (protein)
Unique Ligands	FMN

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1EEL \| pdb_00001eel	Download File View File

STRUCTURE OF A COMPLEX BETWEEN THE DNA SEQUENCE DCGCGAATTCGCG AND BIS[PIPERIDINO-ETHYL]-FURAMIDINE

Neidle, S., Simpson, I.J.

(2000) J Mol Biology 300: 321-337

Released	2000-02-09
Method	X-RAY DIFFRACTION 2.4 Å
Macromolecule	5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3' (nucleic acid)
Unique Ligands	D24

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1EHV \| pdb_00001ehv	Download File View File

A NEW CRYSTAL STRUCTURE FOR THE DODECAMER C-G-C-G-A-A-T-T-C-G-C-G: SYMMETRY EFFECTS ON SEQUENCE-DEPENDENT DNA STRUCTURE

Johansson, E.M.

(2000) J Mol Biology 300: 551-561

Released	2000-07-14
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	DNA (5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3') (nucleic acid)

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1EM0 \| pdb_00001em0	Download File View File

COMPLEX OF D(CCTAGG) WITH TETRA-[N-METHYL-PYRIDYL] PORPHYRIN

Neidle, S., Sanderson, M., Bennett, M., Krah, A., Wien, F., Garman, E., McKenna, R.

(2000) Proc Natl Acad Sci U S A 97: 9476-9481

Released	2000-08-21
Method	X-RAY DIFFRACTION 0.9 Å
Macromolecule	DNA (5'-D((CBR)PCPTPAPGPG)-3') (nucleic acid)
Unique Ligands	MG, PNI

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1FMQ \| pdb_00001fmq	Download File View File

Cyclo-butyl-bis-furamidine complexed with dCGCGAATTCGCG

Simpson, I.J., Lee, M., Kumar, A., Boykin, D.W., Neidle, S.

(2000) Bioorg Med Chem Lett 10: 2593-2597

Released	2000-09-11
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3' (nucleic acid)
Unique Ligands	D34, MG

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1FMS \| pdb_00001fms	Download File View File

Structure of complex between cyclohexyl-bis-furamidine and d(CGCGAATTCGCG)

Simpson, I.J., Lee, M., Kumar, A., Boykin, D.W., Neidle, S.

(2000) Bioorg Med Chem Lett 10: 2593-2597

Released	2000-09-11
Method	X-RAY DIFFRACTION 1.9 Å
Macromolecule	5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3' (nucleic acid)
Unique Ligands	D35, MG

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1FTD \| pdb_00001ftd	Download File View File

5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3'-SYMMETRIC BIS-BENZIMIDAZOLE COMPLEX

Mann, J., Baron, A., Opoku-Boahen, Y., Johansson, E., Parkinson, G., Kelland, L.R., Neidle, S.

(2001) J Med Chem 44: 138-144

Released	2001-02-26
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	DNA (5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3') (nucleic acid)
Unique Ligands	E97, MG

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1IDT \| pdb_00001idt	Download File View File

STRUCTURAL STUDIES ON A PRODRUG-ACTIVATING SYSTEM-CB1954 AND FMN-DEPENDENT NITROREDUCTASE

Johansson, E., Parkinson, G.N., Denny, W.A., Neidle, S.

(2003) J Med Chem 46: 4009-4020

Released	2003-09-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	MINOR FMN-DEPENDENT NITROREDUCTASE (protein)
Unique Ligands	CB1, FMN

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1JPQ \| pdb_00001jpq	Download File View File

Crystal Structure of the Oxytricha Telomeric DNA at 1.6A

Haider, S.M., Parkinson, G., Neidle, S.

(2002) J Mol Biology 320: 189-200

Released	2002-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Macromolecule	5'-D(GPGPGPGP(BRU)PTPTPTPGPGPGPG)-3' (nucleic acid)
Unique Ligands	K

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1JRN \| pdb_00001jrn	Download File View File

Orthorhombic form of Oxytricha telomeric DNA at 2.0A

Haider, S.M., Parkinson, G., Neidle, S.

(2002) J Mol Biology 320: 189-200

Released	2002-06-28
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	5'-D(GPGPGPGPTPTPTPTPGPGPGPG)-3' (nucleic acid)
Unique Ligands	K

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1K8P \| pdb_00001k8p	Download File View File

Structure of the Human G-quadruplex reveals a novel topology

Parkinson, G.N., Lee, M.P.H., Neidle, S.

(2002) Nature 417: 876-880

Released	2002-05-31
Method	X-RAY DIFFRACTION 2.4 Å
Macromolecule	5'-D((BRU)PAPGPGPGP(BRU)PTPAPGPGPGPT)-3' (nucleic acid)
Unique Ligands	K, NA

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1KF1 \| pdb_00001kf1	Download File View File

Structure and Packing of Human Telomeric DNA

Parkinson, G.N., Lee, M.P.H., Neidle, S.

(2002) Nature 417: 876-880

Released	2002-05-31
Method	X-RAY DIFFRACTION 2.1 Å
Macromolecule	5'-D(APGPGPGPTPTPAPGPGPGPTPTPAPGPGPGPTPTPAPGPGPG)-3 (nucleic acid)
Unique Ligands	K

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1L1H \| pdb_00001l1h	Download File View File

Crystal Structure of the Quadruplex DNA-Drug Complex

Haider, S.M., Parkinson, G.N., Neidle, S.

(2003) J Mol Biology 326: 117-125

Released	2003-02-11
Method	X-RAY DIFFRACTION 1.75 Å
Macromolecule	5'-D(GPGPGPGPTPTPTPTPGPGPGPG)-3' (nucleic acid)
Unique Ligands	K, PYN

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1LP7 \| pdb_00001lp7	Download File View File

Crystal Structure of a Non-Self Complementary DNA Dodecamer Containing an A/T Tract: Analysis of the Effect of Crystal Environment on Local Helical Parameters

Todd, A.K., Neidle, S.

To be published

Released	2004-01-20
Method	X-RAY DIFFRACTION 2.4 Å
Macromolecule	5'-D(CPGPCPAPTPAPTPAPAPGPCPG)-3' (nucleic acid) 5'-D(CPGPCPTPTPAPTPAPTPGPCPG)-3' (nucleic acid)
Unique Ligands	MG

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1M6F \| pdb_00001m6f	Download File View File

Strong Binding in the DNA Minor Groove by an Aromatic Diamidine With a Shape That Does Not Match the Curvature of the Groove

Nguyen, B., Lee, M.P.H., Hamelberg, D., Joubert, A., Bailly, C., Brun, R., Neidle, S., Wilson, W.D.

(2002) J Am Chem Soc 124: 13680-13681

Released	2002-11-15
Method	X-RAY DIFFRACTION 1.78 Å
Macromolecule	DNA (5'-D(CPGPCPGPAPAPTPTPCPGPCPG)-3') (nucleic acid)
Unique Ligands	CGQ, MG

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1O0K \| pdb_00001o0k	Download File View File

Structure of the First Parallel DNA Quadruplex-drug Complex

Clark, G.R., Pytel, P.D., Squire, C.J., Neidle, S.

(2003) J Am Chem Soc 125: 4066-4067

Released	2003-04-15
Method	X-RAY DIFFRACTION 1.17 Å
Macromolecule	5'-D(TPGPGPGPGPT)-3' (nucleic acid)
Unique Ligands	DM1, NA

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1OO5 \| pdb_00001oo5	Download File View File

Studies on the Nitroreductase Prodrug-Activating System. Crystal Structures of the Enzyme Active Form and Complexes with the Inhibitor Dicoumarol and Dinitrobenzamide Prodrugs

Johansson, E., Parkinson, G.N., Denny, W.A., Neidle, S.

(2003) J Med Chem 46: 4009-4020

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli
Macromolecule	Oxygen-insensitive NAD(P)H nitroreductase (protein)
Unique Ligands	FMN

1 to 25 of 134 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

102D | pdb_0000102d

109D | pdb_0000109d

166D | pdb_0000166d

1D63 | pdb_00001d63

1D64 | pdb_00001d64

1D65 | pdb_00001d65

1D80 | pdb_00001d80

1DNM | pdb_00001dnm

1DS7 | pdb_00001ds7

1EEL | pdb_00001eel

1EHV | pdb_00001ehv

1EM0 | pdb_00001em0

1FMQ | pdb_00001fmq

1FMS | pdb_00001fms

1FTD | pdb_00001ftd

1IDT | pdb_00001idt

1JPQ | pdb_00001jpq

1JRN | pdb_00001jrn

1K8P | pdb_00001k8p

1KF1 | pdb_00001kf1

1L1H | pdb_00001l1h

1LP7 | pdb_00001lp7

1M6F | pdb_00001m6f

1O0K | pdb_00001o0k

1OO5 | pdb_00001oo5