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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wong, K.K."

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Search Summary

This query matches 41 Structures.

Refinements

Structure Determination Methodology

experimental (41)

Scientific Name of Source Organism

	synthetic construct (41)
	Homo sapiens (7)
	Klebsiella pneumoniae (3)
	Danio rerio (1)

Taxonomy

	other sequences (41)
	Eukaryota (8)
	Bacteria (3)

Experimental Method

	X-RAY DIFFRACTION (30)
	SOLUTION NMR (11)

Polymer Entity Type

Protein (41)

Refinement Resolution (Å)

	0.5 - 1.0 (7)
	1.0 - 1.5 (11)
	1.5 - 2.0 (6)
	2.0 - 2.5 (4)
	2.5 - 3.0 (2)

Release Date

2020 - 2024 (41)

Enzyme Classification Name

	Hydrolases (5)
	Transferases (1)

Symmetry Type

	Asymmetric (22)
	Cyclic (5)

AllSelected

1 to 25 of 41 Structures

Page 1 of 2

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6UCX \| pdb_00006ucx	Download File View File

S2 symmetric peptide design number 1, Wednesday

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-09-23
Method	X-RAY DIFFRACTION 0.85 Å
Organisms	synthetic construct
Macromolecule	S2-1, Wednesday (protein)
Unique Ligands	TFA

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6UD9 \| pdb_00006ud9	Download File View File

S2 symmetric peptide design number 2, Morticia

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-09-23
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	synthetic construct
Macromolecule	S2-2, Morticia (protein)

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6UDR \| pdb_00006udr	Download File View File

S2 symmetric peptide design number 3 crystal form 1, Lurch

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-09-23
Method	X-RAY DIFFRACTION 1 Å
Organisms	synthetic construct
Macromolecule	S2-3, Lurch crystal form 1 (protein)

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6UDW \| pdb_00006udw	Download File View File

S2 symmetric peptide design number 3 crystal form 2, Lurch

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-09-23
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	synthetic construct
Macromolecule	S2-3, Lurch crystal form 2 (protein)

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6UDZ \| pdb_00006udz	Download File View File

S2 symmetric peptide design number 4 crystal form 1, Pugsley

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-09-23
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	synthetic construct
Macromolecule	S2-4, Pusgley crystal form 1 (protein)
Unique Ligands	TFA

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6UF4 \| pdb_00006uf4	Download File View File

S2 symmetric peptide design number 4 crystal form 2, Pugsley

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	synthetic construct
Macromolecule	S2-4, Pusgley crystal form 2 (protein)

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6UF7 \| pdb_00006uf7	Download File View File

S2 symmetric peptide design number 5, Uncle Fester

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-12-02
Method	X-RAY DIFFRACTION 0.8 Å
Organisms	synthetic construct
Macromolecule	S2-5, Uncle Fester (protein)

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6UF8 \| pdb_00006uf8	Download File View File

S2 symmetric peptide design number 6, London Bridge

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-12-02
Method	X-RAY DIFFRACTION 0.8 Å
Organisms	synthetic construct
Macromolecule	S2-6, London Bridge (protein)

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6UF9 \| pdb_00006uf9	Download File View File

S4 symmetric peptide design number 1, Tim apo form

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	synthetic construct
Macromolecule	S4-1, Tim apo-form (protein)
Unique Ligands	SO4

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6UFA \| pdb_00006ufa	Download File View File

S4 symmetric peptide design number 1, Tim zinc-bound form

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-12-02
Method	X-RAY DIFFRACTION 0.77 Å
Organisms	synthetic construct
Macromolecule	S4-1, Tim, Zinc-bound form (protein)
Unique Ligands	ZN

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6UFU \| pdb_00006ufu	Download File View File

C2 symmetric peptide design number 1, Zappy, crystal form 1

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.101 Å
Organisms	synthetic construct
Macromolecule	C2-1, Zappy, crystal form 1 (protein)

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6UG2 \| pdb_00006ug2	Download File View File

C2 symmetric peptide design number 1, Zappy, crystal form 2

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	synthetic construct
Macromolecule	C2-1, Zappy, crystal form 2 (protein)
Unique Ligands	CA

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6UG3 \| pdb_00006ug3	Download File View File

C3 symmetric peptide design number 1, Sporty, crystal form 1

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	synthetic construct
Macromolecule	C3-1, Sporty, crystal form 1 (protein)
Unique Ligands	SO4

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6UG6 \| pdb_00006ug6	Download File View File

C3 symmetric peptide design number 1, Sporty, crystal form 2

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	synthetic construct
Macromolecule	C3-1, Sporty, crystal form 2 (protein)
Unique Ligands	MPD, MRD, NA, PO4, SO4

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6UGB \| pdb_00006ugb	Download File View File

C3 symmetric peptide design number 2, Baby Basil

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-12-02
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	synthetic construct
Macromolecule	C3 symmetric peptide design number 2, Baby Basil (protein)
Unique Ligands	CL, NA, ZN

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6UGC \| pdb_00006ugc	Download File View File

C3 symmetric peptide design number 3

Mulligan, V.K., Kang, C.S., Antselovich, I., Sawaya, M.R., Yeates, T.O., Baker, D.

(2020) Protein Sci 29: 2433-2445

Released	2020-12-02
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	synthetic construct
Macromolecule	C3-3 cyclic peptide design (protein)
Unique Ligands	CD, NA

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6WHN \| pdb_00006whn	Download File View File

Histone deacetylases complex with peptide macrocycles

Bera, A.K., Hosseinzadeh, P., Watson, P., Baker, D.

(2021) Nat Commun 12: 3384-3384

Released	2021-04-21
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Histone deacetylase 2 (protein) U2M-ASN-PRO-LYS-GLN-DLY-TRP-GLY peptide macrocycle (protein)
Unique Ligands	NA, NHE, PEG, PG4, PGE, ZN

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6WHO \| pdb_00006who	Download File View File

Histone deacetylases complex with peptide macrocycles

Bera, A.K., Hosseinzadeh, P., Watson, P., Baker, D.

(2021) Nat Commun 12: 3384-3384

Released	2021-04-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Histone deacetylase 2 (protein) U2M-ASN-PRO-GLU-GLN-DLY-TRP-GLY peptide macrocycle (protein)
Unique Ligands	NA, NHE, PG4, PGE, ZN

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6WHQ \| pdb_00006whq	Download File View File

Histone deacetylases complex with peptide macrocycles

Bera, A.K., Hosseinzadeh, P., Watson, P., Baker, D.

(2021) Nat Commun 12: 3384-3384

Released	2021-04-21
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Histone deacetylase 2 (protein) U2M-ASN-PRO-GLU-GLN-DLY-TRP-GLY peptide macrocycle (protein)
Unique Ligands	NA, NHE, PG4, PGE, ZN

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6WHZ \| pdb_00006whz	Download File View File

Histone deacetylases complex with peptide macrocycles

Bera, A.K., Hosseinzadeh, P., Watson, P., Baker, D.

(2021) Nat Commun 12: 3384-3384

Released	2021-04-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Histone deacetylase 2 (protein) U2M-ASN-HYP-LYS-GLN-DLY-TRP-GLY peptide macrocycle (protein)
Unique Ligands	NA, PG4, PGE, ZN

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6WI3 \| pdb_00006wi3	Download File View File

Histone deacetylases complex with peptide macrocycles

Bera, A.K., Hosseinzadeh, P., Watson, P., Baker, D.

(2021) Nat Commun 12: 3384-3384

Released	2021-04-21
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	(SHA)W(DTH)DN(DSN)(DME)(DAS)K peptide macrocycle (protein) Histone deacetylase 2 (protein)
Unique Ligands	NA, NHE, PG4, PGE, ZN

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6WSJ \| pdb_00006wsj	Download File View File

Crystal Structure of Danio rerio histone deacetylase 6 catalytic domain 2 complexed with cyclopeptide des4.3.1

Watson, P.R., Christianson, D.W.

(2021) Nat Commun 12: 3384-3384

Released	2021-04-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Danio rerio synthetic construct
Macromolecule	Hdac6 protein (protein) cyclopeptide des4.3.1 (protein)
Unique Ligands	EDO, K, ZN

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6XBE \| pdb_00006xbe	Download File View File

Structure of NDM-1 in complex with macrocycle inhibitor NDM1i-1F

Worrall, L.J., Sun, T., Mulligan, V.K., Strynadka, N.C.J.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-03-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Klebsiella pneumoniae synthetic construct
Macromolecule	BlaNDM-4_1_JQ348841 (protein) macrocycle inhibitor NDM1i-1F (protein)
Unique Ligands	ZN

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6XBF \| pdb_00006xbf	Download File View File

Structure of NDM-1 in complex with macrocycle inhibitor NDM1i-1G

Worrall, L.J., Sun, T., Mulligan, V.K., Strynadka, N.C.J.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-03-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Klebsiella pneumoniae synthetic construct
Macromolecule	BlaNDM-4_1_JQ348841 (protein) macrocycle inhibitor NDM1i-1G (protein)
Unique Ligands	ZN

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6XCI \| pdb_00006xci	Download File View File

Structure of NDM-1 in complex with macrocycle inhibitor NDM1i-3D

Worrall, L.J., Sun, T., Mulligan, V.K., Strynadka, N.C.J.

(2021) Proc Natl Acad Sci U S A 118:

Released	2021-03-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Klebsiella pneumoniae synthetic construct
Macromolecule	BlaNDM-4_1_JQ348841 (protein) Macrocycle NDM1i-3D (protein)
Unique Ligands	ACT, CD, ZN

1 to 25 of 41 Structures

Page 1 of 2

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

6UCX | pdb_00006ucx

6UD9 | pdb_00006ud9

6UDR | pdb_00006udr

6UDW | pdb_00006udw

6UDZ | pdb_00006udz

6UF4 | pdb_00006uf4

6UF7 | pdb_00006uf7

6UF8 | pdb_00006uf8

6UF9 | pdb_00006uf9

6UFA | pdb_00006ufa

6UFU | pdb_00006ufu

6UG2 | pdb_00006ug2

6UG3 | pdb_00006ug3

6UG6 | pdb_00006ug6

6UGB | pdb_00006ugb

6UGC | pdb_00006ugc

6WHN | pdb_00006whn

6WHO | pdb_00006who

6WHQ | pdb_00006whq

6WHZ | pdb_00006whz

6WI3 | pdb_00006wi3

6WSJ | pdb_00006wsj

6XBE | pdb_00006xbe

6XBF | pdb_00006xbf

6XCI | pdb_00006xci