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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Xiao, L."

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Search Summary

This query matches 78 Structures.

Refinements

Structure Determination Methodology

experimental (78)

Scientific Name of Source Organism

	Homo sapiens (34)
	Pseudomonas aeruginosa (10)
	Escherichia coli K-12 (8)
	Rattus norvegicus (5)
	Klebsiella pneumoniae (4)
	Pseudomonas aeruginosa PAO1 (4)
	Mus musculus (3)
	Mycobacterium tuberculosis H37Rv (3)
	synthetic construct (3)
	Arabidopsis thaliana (2)

More...

Taxonomy

	Eukaryota (45)
	Bacteria (35)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (46)
	ELECTRON MICROSCOPY (32)

Polymer Entity Type

	Protein (76)
	DNA (5)
	RNA (4)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (14)
	1.5 - 2.0 (10)
	2.0 - 2.5 (11)
	2.5 - 3.0 (10)
	3.0 - 3.5 (22)
	3.5 - 4.0 (7)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (2)
	2010 - 2014 (11)
	2015 - 2019 (11)
	2020 - 2024 (45)
	2025 - 2029 (7)

Enzyme Classification Name

	Transferases (15)
	Hydrolases (21)
	Ligases (2)
	Oxidoreductases (4)
	Isomerases (2)
	Translocases (2)

Membrane Protein Annotation

	PDBTM (25)
	OPM (23)
	mpstruc (23)
	MemProtMD (20)

Symmetry Type

	Asymmetric (60)
	Cyclic (14)
	Helical (2)

SCOP Classification

	Alpha and beta proteins (a+b) (12)
	All beta proteins (5)
	All alpha proteins (4)
	Alpha and beta proteins (a/b) (3)
	Artifacts (5)
	Multi-domain proteins (alpha and beta) (4)
	Membrane and cell surface proteins and peptides (1)

AllSelected

1 to 25 of 78 Structures

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1R54 \| pdb_00001r54	Download File View File

Crystal structure of the catalytic domain of human ADAM33

Orth, P., Reicher, P., Wang, W., Prosise, W.W., Yarosh-Tomaine, T., Hammond, G., Xiao, L., Mirza, U.A., Zou, J., Strickland, C., Taremi, S.S.

(2004) J Mol Biology 335: 129-137

Released	2004-10-12
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	ADAM 33 (protein)
Unique Ligands	CA, CL, ZN
Unique branched monosaccharides	NAG

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1R55 \| pdb_00001r55	Download File View File

Crystal structure of the catalytic domain of human ADAM 33

Orth, P., Reichert, P., Wang, W., Prosise, W.W., Yarosh-Tomaine, T., Hammond, G., Xiao, L., Mirza, U.A., Zou, J., Strickland, C., Taremi, S.S., Le, H.V., Madison, V.

(2004) J Mol Biology 335: 129-137

Released	2004-10-12
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Homo sapiens
Macromolecule	ADAM 33 (protein)
Unique Ligands	097, CA, CL, ZN
Unique branched monosaccharides	MAN, NAG

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3JZF \| pdb_00003jzf	Download File View File

Crystal structure of biotin carboxylase from E. Coli in complex with benzimidazoles series

Orth, P.

(2009) Bioorg Med Chem Lett 19: 6507-6514

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.13 Å
Organisms	Escherichia coli K-12
Macromolecule	Biotin carboxylase (protein)
Unique Ligands	CO3, JZK

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3JZI \| pdb_00003jzi	Download File View File

Crystal structure of biotin carboxylase from E. Coli in complex with benzimidazole series

Cheng, C., Shipps, G.W., Yang, Z., Sun, B., Kawahata, N., Soucy, K., Soriano, A., Orth, P., Xiao, L., Mann, P., Black, T.

(2009) Bioorg Med Chem Lett 19: 6507-6514

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Escherichia coli K-12
Macromolecule	Biotin carboxylase (protein)
Unique Ligands	JZL

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3UI7 \| pdb_00003ui7	Download File View File

Discovery of orally active pyrazoloquinoline as a potent PDE10 inhibitor for the management of schizophrenia

Yang, S., Smotryski, J., Mcelroy, W., Ho, G., Tulshian, D., Greenlee, W.J., Hodgson, R., Xiao, L., Hruza, A.

(2012) Bioorg Med Chem Lett 22: 235-239

Released	2011-12-21
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	C1L, MG, ZN

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3UUO \| pdb_00003uuo	Download File View File

The discovery of potent, selectivity, and orally bioavailable pyrozoloquinolines as PDE10 inhibitors for the treatment of Schizophrenia

Ho, G.D., Yang, S., Smotryski, J., Bercovici, A., Nechuta, T., Smith, E.M., McElroy, W., Tan, Z., Tulshian, D., Mckittrick, B., Greenlee, W.J., Hruza, A., Xiao, L., Rindgen, D., Guzzi, M., Zhang, X., Bleickardt, C., Mullins, D., Hodgson, R.

(2012) Bioorg Med Chem Lett 22: 1019-1022

Released	2012-01-25
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	0CV, MG, PO4, ZN

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4DFF \| pdb_00004dff	Download File View File

The SAR development of dihydroimidazoisoquinoline derivatives as phosphodiesterase 10A inhibitors for the treatment of schizophrenia

Ho, G.D., Seganish, W.M., Bercovici, A., Tulshian, D., Greenlee, W.J., Van Rijn, R., Hruza, A., Xiao, L., Rindgen, D., Mullins, D., Guzzi, M., Zhang, X., Bleichardt, C., Hodgson, R.

(2012) Bioorg Med Chem Lett 22: 2585-2589

Released	2012-03-14
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Homo sapiens
Macromolecule	cAMP and cAMP-inhibited cGMP 3',5'-cyclic phosphodiesterase 10A (protein)
Unique Ligands	0JP, MG, ZN

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4EHZ \| pdb_00004ehz	Download File View File

The Jak1 kinase domain in complex with inhibitor

Lupardus, P.J., Steffek, M.

(2012) J Med Chem 55: 6176-6193

Released	2012-07-04
Method	X-RAY DIFFRACTION 2.174 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK1 (protein)
Unique Ligands	EDO, JAK

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4EI4 \| pdb_00004ei4	Download File View File

JAK1 kinase (JH1 domain) in complex with compound 20

Eigenbrot, C., Steffek, M.

(2012) J Med Chem 55: 6176-6193

Released	2012-07-04
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK1 (protein)
Unique Ligands	0Q2

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4F08 \| pdb_00004f08	Download File View File

Discovery and Optimization of C-2 Methyl Imidazo-pyrrolopyridines as Potent and Orally Bioavailable JAK1 Inhibitors with Selectivity over JAK2

Murray, J.M.

(2012) J Med Chem 55: 6176-6193

Released	2012-07-04
Method	X-RAY DIFFRACTION 2.82 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK2 (protein)
Unique Ligands	1RS

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4F09 \| pdb_00004f09	Download File View File

Discovery and Optimization of C-2 Methyl Imidazo-pyrrolopyridines as Potent and Orally Bioavailable JAK1 Inhibitors with Selectivity over JAK2

Murray, J.M.

(2012) J Med Chem 55: 6176-6193

Released	2012-07-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK2 (protein)
Unique Ligands	JAK

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4NP4 \| pdb_00004np4	Download File View File

Clostridium difficile toxin B CROP domain in complex with FAB domains of neutralizing antibody bezlotoxumab

Orth, P., Xiao, L., Hernandez, L.D., Reichert, P., Sheth, P., Beaumont, M., Murgolo, N., Ermakov, G., DiNunzio, E., Racine, F., Karczewski, J., Secore, S., Ingram, R.N., Mayhood, T., Strickland, C., Therien, A.G.

(2014) J Biological Chem 289: 18008-18021

Released	2014-05-21
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Clostridioides difficile Homo sapiens
Macromolecule	Toxin B (protein) bezlotoxumab heavy chain (protein) bezlotoxumab light chain (protein)

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4QYY \| pdb_00004qyy	Download File View File

Discovery of Novel, Dual Mechanism ERK Inhibitors by Affinity Selection Screening of an Inactive Kinase State

Deng, Y., Shipps, G.W., Cooper, A., English, J.M., Annis, D.A., Carr, D., Nan, Y., Wang, T., Zhu, Y.H., Chuang, C., Dayananth, P., Hruza, A.W., Xiao, L., Jin, W., Kirschmeier, P., Windsor, W.T., Samatar, A.A.

(2014) J Med Chem 57: 8817-8826

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	3G7, SO4

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4TOT \| pdb_00004tot	Download File View File

Crystal structure of rat cyclophilin D in complex with a potent nonimmunosuppressive inhibitor

Knapp, M.S., Elling, R.A.

(2014) J Med Chem 57: 8503-8516

Released	2014-11-12
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Rattus norvegicus synthetic construct
Macromolecule	Peptidyl-prolyl cis-trans isomerase F, mitochondrial (protein) nonimmunosuppressive inhibitor (protein)
Unique Ligands	P6G, SO4

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4WAF \| pdb_00004waf	Download File View File

Crystal Structure of a novel tetrahydropyrazolo[1,5-a]pyrazine in an engineered PI3K alpha

Knapp, M.S., Elling, R.A.

(2015) ACS Med Chem Lett 6: 37-41

Released	2014-12-31
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 3-kinase regulatory subunit alpha (protein) Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (protein)
Unique Ligands	3K6

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5C45 \| pdb_00005c45	Download File View File

Selective Small Molecule Inhibition of the FMN Riboswitch

Fischmann, T.O.

(2015) Nature 526: 672-677

Released	2015-10-07
Method	X-RAY DIFFRACTION 2.93 Å
Organisms	Fusobacterium nucleatum
Macromolecule	FMN Riboswitch (nucleic acid)
Unique Ligands	51B, K, MG

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5ENZ \| pdb_00005enz	Download File View File

S. aureus MnaA-UDP co-structure

Fischmann, T.O.

(2016) PLoS Pathog 12: e1005585-e1005585

Released	2016-04-27
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Staphylococcus aureus
Macromolecule	UDP-GlcNAc 2-epimerase (protein)
Unique Ligands	PG4, SO4, TRS, UDP

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5KX9 \| pdb_00005kx9	Download File View File

Selective Small Molecule Inhibition of the FMN Riboswitch

Fischmann, T.O.

(2016) RNA Biol 13: 946-954

Released	2016-08-24
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Fusobacterium nucleatum
Macromolecule	FMN Riboswitch (nucleic acid)
Unique Ligands	6YG, K, MG

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5U6I \| pdb_00005u6i	Download File View File

Discovery of MLi-2, an Orally Available and Selective LRRK2 Inhibitor that Reduces Brain Kinase Activity

Scott, J.D., DeMong, D.E., Fell, M.J., Mirescu, C., Basu, K., Greshock, T.J., Morrow, J.A., Xiao, L., Hruza, A., Harris, J., Tiscia, H.E., Chang, R.K., Embrey, M.W., McCauley, J.A., Li, W., Lin, S., Liu, H., Dai, X., Baptista, M., Agnihotri, G., Columbus, J., Mei, H., Poirier, M., Zhou, X., Lin, Y., Yin, Z., Sanders, J.M., Drolet, R.E., Kern, J.T., Kennedy, M.E., Parker, E.M., Stamford, A.W., Nargund, R., Miller, M.W.

(2017) J Med Chem 60: 2983-2992

Released	2017-03-15
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	81Y, SO4

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5X5Y \| pdb_00005x5y	Download File View File

A membrane protein complex

Luo, Q., Yang, X., Huang, Y.

(2017) Nat Struct Mol Biol 24: 469-474

Released	2017-04-05
Method	X-RAY DIFFRACTION 3.465 Å
Organisms	Pseudomonas aeruginosa PAO1
Macromolecule	Probable ATP-binding component of ABC transporter (protein) Uncharacterized protein (protein)

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6CPW \| pdb_00006cpw	Download File View File

Discovery of 3(S)-thiomethyl pyrrolidine ERK inhibitors for oncology

Hruza, A., Hruza, A.

(2018) Bioorg Med Chem Lett 28: 2029-2034

Released	2018-05-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	F8V, SO4

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6DCG \| pdb_00006dcg	Download File View File

Discovery of MK-8353: An Orally Bioavailable Dual Mechanism ERK Inhibitor for Oncology

Boga, S.B., Deng, Y., Zhu, L., Nan, Y., Cooper, A., Shipps Jr., G.W., Doll, R., Shih, N., Zhu, H., Sun, R., Wang, T., Paliwal, S., Tsui, H., Gao, X., Yao, X., Desai, J., Wang, J., Alhassan, A.B., Kelly, J., Patel, M., Muppalla, K., Gudipati, S., Zhang, L., Buevich, A., Hesk, D., Carr, D., Dayananth, P., Mei, H., Cox, K., Sherborne, B., Hruza, A.W., Xiao, L., Jin, W., Long, B., Liu, G., Taylor, S.A., Kirschmeier, P., Windsor, W.T., Bishop, R., Samatar, A.A.

(2018) ACS Med Chem Lett 9: 761-767

Released	2018-08-08
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Rattus norvegicus
Macromolecule	Mitogen-activated protein kinase 1 (protein)
Unique Ligands	G67, SO4

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6LYQ \| pdb_00006lyq	Download File View File

Structure of the BAM complex

Xiao, L., Huang, Y.

(2021) FASEB J 35: e21207-e21207

Released	2021-01-06
Method	X-RAY DIFFRACTION 3.19 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 6

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6LYR \| pdb_00006lyr	Download File View File

Structure of the BAM complex

Xiao, L., Huang, Y.

(2021) FASEB J 35: e21207-e21207

Released	2021-01-06
Method	X-RAY DIFFRACTION 3.28 Å
Organisms	Escherichia coli K-12
Macromolecule	Unique protein chains: 6

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6LYS \| pdb_00006lys	Download File View File

Structure of the BAM complex

Xiao, L., Huang, Y.

(2021) FASEB J 35: e21207-e21207

Released	2021-01-13
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Escherichia coli K-12
Macromolecule	Outer membrane protein assembly factor BamA (protein) Outer membrane protein assembly factor BamB (protein) Outer membrane protein assembly factor BamC (protein) Outer membrane protein assembly factor BamD (protein) Outer membrane protein assembly factor BamE (protein)

1 to 25 of 78 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1R54 | pdb_00001r54

1R55 | pdb_00001r55

3JZF | pdb_00003jzf

3JZI | pdb_00003jzi

3UI7 | pdb_00003ui7

3UUO | pdb_00003uuo

4DFF | pdb_00004dff

4EHZ | pdb_00004ehz

4EI4 | pdb_00004ei4

4F08 | pdb_00004f08

4F09 | pdb_00004f09

4NP4 | pdb_00004np4

4QYY | pdb_00004qyy

4TOT | pdb_00004tot

4WAF | pdb_00004waf

5C45 | pdb_00005c45

5ENZ | pdb_00005enz

5KX9 | pdb_00005kx9

5U6I | pdb_00005u6i

5X5Y | pdb_00005x5y

6CPW | pdb_00006cpw

6DCG | pdb_00006dcg

6LYQ | pdb_00006lyq

6LYR | pdb_00006lyr

6LYS | pdb_00006lys