RCSB PDB: Search

1AA9 \| pdb_00001aa9	Download File View File

HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE

Ito, Y., Yamasaki, Y., Muto, Y., Kawai, G., Nishimura, S., Miyazawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1997) Biochemistry 36: 9109-9119

Released	1997-07-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	C-HA-RAS (protein)
Unique Ligands	GDP, MG

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1CTO \| pdb_00001cto	Download File View File

NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF THE LIGAND-BINDING REGION OF MURINE GRANULOCYTE COLONY-STIMULATING FACTOR RECEPTOR, MINIMIZED AVERAGE STRUCTURE

Yamasaki, K., Naito, S., Anaguchi, H., Ohkubo, T., Ota, Y.

(1997) Nat Struct Biol 4: 498-504

Released	1997-10-22
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	GRANULOCYTE COLONY-STIMULATING FACTOR RECEPTOR (protein)

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1GCC \| pdb_00001gcc	Download File View File

SOLUTION NMR STRUCTURE OF THE COMPLEX OF GCC-BOX BINDING DOMAIN OF ATERF1 AND GCC-BOX DNA, MINIMIZED AVERAGE STRUCTURE

Yamasaki, K., Allen, M.D., Ohme-Takagi, M., Tateno, M., Suzuki, M.

(1998) EMBO J 17: 5484-5496

Released	1999-03-23
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 (protein) DNA (5'-D(GPCPTPGPGPCPGPGPCPTPA)-3') (nucleic acid) DNA (5'-D(TPAPGPCPCPGPCPCPAPGPC)-3') (nucleic acid)

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1GCF \| pdb_00001gcf	Download File View File

NMR STRUCTURE OF THE C-TERMINAL DOMAIN OF THE LIGAND-BINDING REGION OF MURINE GRANULOCYTE COLONY-STIMULATING FACTOR RECEPTOR, 12 STRUCTURES

Yamasaki, K., Naito, S., Anaguchi, H., Ohkubo, T., Ota, Y.

(1997) Nat Struct Biol 4: 498-504

Released	1997-10-22
Method	SOLUTION NMR
Organisms	Mus musculus
Macromolecule	GRANULOCYTE COLONY-STIMULATING FACTOR RECEPTOR (protein)

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1NZ8 \| pdb_00001nz8	Download File View File

Solution Structure of the N-utilization substance G (NusG) N-terminal (NGN) domain from Thermus thermophilus

Reay, P., Yamasaki, K., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Proteins 56: 40-51

Released	2004-04-06
Method	SOLUTION NMR
Organisms	Thermus thermophilus
Macromolecule	TRANSCRIPTION ANTITERMINATION PROTEIN NUSG (protein)

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1NZ9 \| pdb_00001nz9	Download File View File

Solution Structure of the N-utilization substance G (NusG) C-terminal (NGC) domain from Thermus thermophilus

Reay, P., Yamasaki, K., Terada, T., Kuramitsu, S., Shirouzu, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Proteins 56: 40-51

Released	2004-04-06
Method	SOLUTION NMR
Organisms	Thermus thermophilus
Macromolecule	TRANSCRIPTION ANTITERMINATION PROTEIN NUSG (protein)

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1RCH \| pdb_00001rch	Download File View File

SOLUTION NMR STRUCTURE OF RIBONUCLEASE HI FROM ESCHERICHIA COLI, 8 STRUCTURES

Yamazaki, T., Fujiwara, M., Kato, T., Yamasaki, K., Nagayama, K.

(2000) Biol Pharm Bull 23: 1147

Released	1997-02-12
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	RIBONUCLEASE HI (protein)

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1UAO \| pdb_00001uao	Download File View File

NMR Structure of designed protein, Chignolin, consisting of only ten amino acids (Ensembles)

Honda, S., Yamasaki, K.

(2004) Structure 12: 1507-1518

Released	2004-04-13
Method	SOLUTION NMR
Macromolecule	Chignolin (protein)

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1UL4 \| pdb_00001ul4	Download File View File

Solution structure of the DNA-binding domain of squamosa promoter binding protein-like 4

Yamasaki, K., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Mol Biology 337: 49-63

Released	2004-03-09
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	squamosa promoter binding protein-like 4 (protein)
Unique Ligands	ZN

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1UL5 \| pdb_00001ul5	Download File View File

Solution structure of the DNA-binding domain of squamosa promoter binding protein-like 7

Yamasaki, K., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) J Mol Biology 337: 49-63

Released	2004-03-09
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	squamosa promoter binding protein-like 7 (protein)
Unique Ligands	ZN

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1WID \| pdb_00001wid	Download File View File

Solution Structure of the B3 DNA-Binding Domain of RAV1

Yamasaki, K., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2004) Plant Cell 16: 3448-3459

Released	2004-11-28
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	DNA-binding protein RAV1 (protein)

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1WIJ \| pdb_00001wij	Download File View File

Solution Structure of the DNA-Binding Domain of Ethylene-Insensitive3-Like3

Yamasaki, K., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) J Mol Biology 348: 253-264

Released	2004-11-28
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	ETHYLENE-INSENSITIVE3-like 3 protein (protein)

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1WJ0 \| pdb_00001wj0	Download File View File

Solution Structure of the DNA-Binding Domain of Squamosa Promoter Binding Protein-Like 12 Lacking the Second Zinc-Binding Site

Yamasaki, K., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2004-11-28
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	squamosa promoter-binding protein-like 12 (protein)
Unique Ligands	ZN

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1WJ2 \| pdb_00001wj2	Download File View File

Solution Structure of the C-terminal WRKY Domain of AtWRKY4

Yamasaki, K., Inoue, M., Kigawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2005) Plant Cell 17: 944-956

Released	2004-11-28
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	Probable WRKY transcription factor 4 (protein)
Unique Ligands	ZN

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1YSE \| pdb_00001yse	Download File View File

Solution structure of the MAR-binding domain of SATB1

Yamasaki, K., Yamaguchi, H.

(2006) J Biological Chem 281: 5319-5327

Released	2006-01-03
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA-binding protein SATB1 (protein)

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2GCC \| pdb_00002gcc	Download File View File

SOLUTION STRUCTURE OF THE GCC-BOX BINDING DOMAIN, NMR, MINIMIZED MEAN STRUCTURE

Allen, M.D., Yamasaki, K., Ohme-Takagi, M., Tateno, M., Suzuki, M.

(1998) EMBO J 17: 5484-5496

Released	1999-03-23
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	ATERF1 (protein)

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2KXE \| pdb_00002kxe	Download File View File

N-terminal domain of the DP1 subunit of an archaeal D-family DNA polymerase

Yamasaki, K., Matsui, I.

(2010) FEBS Lett 584: 3370-3375

Released	2010-08-18
Method	SOLUTION NMR
Organisms	Pyrococcus horikoshii
Macromolecule	DNA polymerase II small subunit (protein)

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2LEX \| pdb_00002lex	Download File View File

Complex of the C-terminal WRKY domain of AtWRKY4 and a W-box DNA

Yamasaki, K., Kigawa, T., Watanabe, S., Inoue, M., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2012) J Biological Chem

Released	2012-01-18
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	Probable WRKY transcription factor 4 (protein) DNA (5'-D(CPGCPCPTPTPTPGPAPCPCPAPGPCPGPC)-3') (nucleic acid) DNA (5'-D(GPCPGPCTPGPGPTPCPAPAPAPGPGPCPG)-3') (nucleic acid)
Unique Ligands	ZN

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2MW8 \| pdb_00002mw8	Download File View File

Solution structure of SATB1 homeodomain

Yamasaki, K., Yamasaki, T.

To be published

Released	2015-11-04
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA-binding protein SATB1 (protein)

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2O49 \| pdb_00002o49	Download File View File

Crystal Structure of the N-terminal CUT domain of SATB1 Bound to Matrix Attachment Region DNA

Yamasaki, K., Akiba, T., Harata, K.

(2007) Nucleic Acids Res 35: 5073-5084

Released	2007-08-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	DNA-binding protein SATB1 (protein) DNA (5'-D(DGPDCPDAPDTPDAPDTPDAPDTPDTPDAPDGPDC)-3') (nucleic acid) DNA (5'-D(DGPDCPDTPDAPDAPDTPDAPDTPDAPDTPDGPDC)-3') (nucleic acid)

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2O4A \| pdb_00002o4a	Download File View File

Crystal Structure of the N-terminal CUT Domain of SATB1 Bound to Matrix Attachment Region DNA

Yamasaki, K., Akiba, T., Harata, K.

(2007) Nucleic Acids Res 35: 5073-5084

Released	2007-08-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	DNA-binding protein SATB1 (protein) DNA (5'-D(DGPDCPDAPDTPDAPDTPDAPDTPDTPDAPDGPDC)-3') (nucleic acid) DNA (5'-D(DGPDCPDTPDAPDAPDTPDAPDTPDAPDTPDGPDC)-3') (nucleic acid)