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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Zhou, K."

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Search Summary

This query matches 121 Structures.

Refinements

Structure Determination Methodology

experimental (121)

Scientific Name of Source Organism

	Homo sapiens (36)
	Microcystis aeruginosa PCC 7806 (7)
	Bacillus anthracis (6)
	Saccharomyces cerevisiae (6)
	Bombyx mori (5)
	Bombyx mori cypovirus 1 (5)
	Mycobacterium tuberculosis H37Rv (5)
	Saccharomyces cerevisiae S288C (5)
	synthetic construct (5)
	Escherichia coli (4)

More...

Taxonomy

	Eukaryota (63)
	Bacteria (47)
	Riboviria (13)
	other sequences (5)
	Ribozyviria (3)
	Archaea (1)
	Duplodnaviria (1)
	Monodnaviria (1)
	Varidnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (84)
	ELECTRON MICROSCOPY (37)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (116)
	RNA (24)
	DNA (15)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (12)
	2.0 - 2.5 (32)
	2.5 - 3.0 (32)
	3.0 - 3.5 (20)
	3.5 - 4.0 (8)
	4.0 - 4.5 (5)
	> 4.5 (11)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (13)
	2005 - 2009 (3)
	2010 - 2014 (25)
	2015 - 2019 (45)
	2020 - 2024 (31)

Enzyme Classification Name

	Hydrolases (25)
	Transferases (17)
	Lyases (11)
	Oxidoreductases (8)
	Isomerases (1)

Membrane Protein Annotation

	OPM (9)
	PDBTM (9)
	MemProtMD (4)
	mpstruc (4)

Symmetry Type

	Asymmetric (81)
	Cyclic (28)
	Octahedral (4)
	Dihedral (3)
	Icosahedral (1)

SCOP Classification

	All alpha proteins (7)
	Alpha and beta proteins (a+b) (15)
	Alpha and beta proteins (a/b) (8)
	Membrane and cell surface proteins and peptides (1)
	Multi-domain proteins (alpha and beta) (3)
	All beta proteins (2)
	Artifacts (1)

AllSelected

1 to 25 of 121 Structures

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1DRZ \| pdb_00001drz	Download File View File

U1A SPLICEOSOMAL PROTEIN/HEPATITIS DELTA VIRUS GENOMIC RIBOZYME COMPLEX

Ferre-D'Amare, A.R., Zhou, K., Doudna, J.A.

(1998) Nature 395: 567-574

Released	1999-02-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Hepatitis delta virus Homo sapiens
Macromolecule	PROTEIN (U1 SMALL RIBONUCLEOPROTEIN A) (protein) RNA (HEPATITIS DELTA VIRUS GENOMIC RIBOZYME) (nucleic acid)
Unique Ligands	MG, SO4

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1GID \| pdb_00001gid	Download File View File

CRYSTAL STRUCTURE OF A GROUP I RIBOZYME DOMAIN: PRINCIPLES OF RNA PACKING

Cate, J.H., Gooding, A.R., Podell, E., Zhou, K., Golden, B.L., Kundrot, C.E., Cech, T.R., Doudna, J.A.

(1996) Science 273: 1678-1685

Released	1996-12-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	synthetic construct
Macromolecule	P4-P6 RNA RIBOZYME DOMAIN (nucleic acid)
Unique Ligands	MG, NCO

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1GRZ \| pdb_00001grz	Download File View File

A PREORGANIZED ACTIVE SITE IN THE CRYSTAL STRUCTURE OF THE TETRAHYMENA RIBOZYME

Golden, B.L., Gooding, A.R., Podell, E.R., Cech, T.R.

(1998) Science 282: 259-264

Released	1998-11-24
Method	X-RAY DIFFRACTION 5 Å
Organisms	Tetrahymena thermophila
Macromolecule	LSU R-RNA GROUP I INTRON (nucleic acid)

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1HR2 \| pdb_00001hr2	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF A MUTANT P4-P6 DOMAIN (DELC209) OF TETRAHYMENA THEMOPHILA GROUP I INTRON.

Juneau, K., Podell, E.R., Harrington, D.J., Cech, T.R.

(2001) Structure 9: 221-231

Released	2001-04-12
Method	X-RAY DIFFRACTION 2.25 Å
Macromolecule	P4-P6 DELC209 MUTANT RNA RIBOZYME DOMAIN (nucleic acid)
Unique Ligands	MG

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1HU9 \| pdb_00001hu9	Download File View File

LIPOXYGENASE-3 (SOYBEAN) COMPLEX WITH 4-HYDROPEROXY-2-METHOXY-PHENOL

Zhou, K., Skrzypczak-Jankun, E., McCabe, N.P., Selman, S.H., Jankun, J.

(2003) Int J Mol Med 12: 17-24

Released	2003-06-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Glycine max
Macromolecule	LIPOXYGENASE-3 (protein)
Unique Ligands	4HM, FE

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1JNQ \| pdb_00001jnq	Download File View File

LIPOXYGENASE-3 (SOYBEAN) COMPLEX WITH EPIGALLOCATHECHIN (EGC)

Zhou, K., Skrzypczak-Jankun, E., Jankun, J.

(2003) Int J Mol Med 12: 415-420

Released	2003-06-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Glycine max
Macromolecule	lipoxygenase-3 (protein)
Unique Ligands	EGT, FE2

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1KH6 \| pdb_00001kh6	Download File View File

Crystal Structure of an RNA Tertiary Domain Essential to HCV IRES-mediated Translation Initiation.

Kieft, J.S., Zhou, K., Grech, A., Jubin, R., Doudna, J.A.

(2002) Nat Struct Biol 9: 370-374

Released	2002-04-26
Method	X-RAY DIFFRACTION 2.9 Å
Macromolecule	JIIIabc (nucleic acid)

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1SJ3 \| pdb_00001sj3	Download File View File

Hepatitis Delta Virus Gemonic Ribozyme Precursor, with Mg2+ Bound

Ke, A., Zhou, K., Ding, F., Cate, J.H., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Hepatitis delta virus Homo sapiens
Macromolecule	small nuclear ribonucleoprotein A (protein) precursor form of the Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	MG

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1SJ4 \| pdb_00001sj4	Download File View File

Crystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solution

Ke, A., Zhou, K., Ding, F., Cate, J.H., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Hepatitis delta virus Homo sapiens
Macromolecule	small nuclear ribonucleoprotein A (protein) precursor form of the Hepatitis Delta virus ribozyme (nucleic acid)

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1SJF \| pdb_00001sjf	Download File View File

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Cobalt Hexammine solution

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	NCO

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1VBX \| pdb_00001vbx	Download File View File

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solution

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)

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1VBY \| pdb_00001vby	Download File View File

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ bound

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	MN, NA

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1VBZ \| pdb_00001vbz	Download File View File

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solution

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	BA

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1VC0 \| pdb_00001vc0	Download File View File

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Imidazole and Sr2+ solution

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	SR

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1VC5 \| pdb_00001vc5	Download File View File

Crystal Structure of the Wild Type Hepatitis Delta Virus Gemonic Ribozyme Precursor, in EDTA solution

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	NA

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1VC6 \| pdb_00001vc6	Download File View File

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Product with C75U Mutaion, cleaved in Imidazole and Mg2+ solutions

Ke, A., Zhou, K., Ding, F., Cate, J.H.D., Doudna, J.A.

(2004) Nature 429: 201-205

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Hepatitis Delta virus ribozyme (nucleic acid)
Unique Ligands	MG

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2EA1 \| pdb_00002ea1	Download File View File

Crystal structure of Ribonuclease I from Escherichia coli COMPLEXED WITH GUANYLYL-2(PRIME),5(PRIME)-GUANOSINE

Zhou, K., Pan, J., Padmanabhan, S., Lim, R.W., Lim, L.W.

To be published

Released	2008-01-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	Ribonuclease I (protein)
Unique Ligands	GPG

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2FFL \| pdb_00002ffl	Download File View File

Crystal Structure of Dicer from Giardia intestinalis

Doudna, J.A., MacRae, I.J., Adams, P.D.

(2006) Science 311: 195-198

Released	2006-01-24
Method	X-RAY DIFFRACTION 3.33 Å
Organisms	Giardia intestinalis
Macromolecule	Dicer (protein)
Unique Ligands	MN

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2XLI \| pdb_00002xli	Download File View File

Crystal structure of the Csy4-crRNA complex, monoclinic form

Haurwitz, R.E., Jinek, M., Wiedenheft, B., Zhou, K., Doudna, J.A.

(2010) Science 329: 1355

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.33 Å
Organisms	Pseudomonas aeruginosa UCBPP-PA14
Macromolecule	CSY4 ENDORIBONUCLEASE (protein) 5'-R(CPUPGPCPCPGPUPAPUPAPGPGPCPADGC)-3' (nucleic acid)

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2XLJ \| pdb_00002xlj	Download File View File

Crystal structure of the Csy4-crRNA complex, hexagonal form

Haurwitz, R.E., Jinek, M., Wiedenheft, B., Zhou, K., Doudna, J.A.

(2010) Science 329: 1355

Released	2010-09-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Pseudomonas aeruginosa UCBPP-PA14
Macromolecule	CSY4 ENDORIBONUCLEASE (protein) 5'-R(CPUPGPCPCPGPUPAPUPAPGPGPCPADGC)-3' (nucleic acid)

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2XLK \| pdb_00002xlk	Download File View File

Crystal structure of the Csy4-crRNA complex, orthorhombic form

Haurwitz, R.E., Jinek, M., Wiedenheft, B., Zhou, K., Doudna, J.A.

(2010) Science 329: 1355

Released	2010-09-22
Method	X-RAY DIFFRACTION 1.805 Å
Organisms	Pseudomonas aeruginosa UCBPP-PA14
Macromolecule	CSY4 ENDORIBONUCLEASE (protein) 5'-R(CPUPGPCPCPGPUPAPUPAPGPGPCPADGC)-3' (nucleic acid)

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376D \| pdb_0000376d	Download File View File

A ZIPPER-LIKE DNA DUPLEX D(GCGAAAGCT)

Cruse, W.B.T., Shepard, W., Prange, T., delalFortelle, E., Fourme, R.

(1998) Structure 6: 849-861

Released	1999-10-26
Method	X-RAY DIFFRACTION 2.1 Å
Macromolecule	DNA (5'-D(GP(CBR)PGPAPAPAPGPCP*T)-3') (nucleic acid)
Unique Ligands	NCO

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3GOD \| pdb_00003god	Download File View File

Structural basis for DNase activity of a conserved protein implicated in CRISPR-mediated antiviral defense

Wiedenheft, B.

(2009) Structure 17: 904-912

Released	2009-06-30
Method	X-RAY DIFFRACTION 2.17 Å
Organisms	Pseudomonas aeruginosa UCBPP-PA14
Macromolecule	Cas1 (protein)
Unique Ligands	CA, MN, NA

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3J0A \| pdb_00003j0a	Download File View File

Homology model of human Toll-like receptor 5 fitted into an electron microscopy single particle reconstruction

Modis, Y., Zhou, K., Kanai, R., Lee, P., Wang, H.W.

(2012) J Struct Biol 177: 402-409

Released	2011-12-28
Method	ELECTRON MICROSCOPY 26 Å
Organisms	Homo sapiens
Macromolecule	Toll-like receptor 5 (protein)
Unique branched monosaccharides	FUC, NAG

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3J8X \| pdb_00003j8x	Download File View File

High-resolution structure of no-nucleotide kinesin on microtubules

Shang, Z., Zhou, K., Xu, C., Csencsits, R., Cochran, J.C., Sindelar, C.V.

(2014) Elife 3: e04686-e04686

Released	2014-12-10
Method	ELECTRON MICROSCOPY 5 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	Kinesin-1 heavy chain (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GDP, GTP

1 to 25 of 121 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1DRZ | pdb_00001drz

1GID | pdb_00001gid

1GRZ | pdb_00001grz

1HR2 | pdb_00001hr2

1HU9 | pdb_00001hu9

1JNQ | pdb_00001jnq

1KH6 | pdb_00001kh6

1SJ3 | pdb_00001sj3

1SJ4 | pdb_00001sj4

1SJF | pdb_00001sjf

1VBX | pdb_00001vbx

1VBY | pdb_00001vby

1VBZ | pdb_00001vbz

1VC0 | pdb_00001vc0

1VC5 | pdb_00001vc5

1VC6 | pdb_00001vc6

2EA1 | pdb_00002ea1

2FFL | pdb_00002ffl

2XLI | pdb_00002xli

2XLJ | pdb_00002xlj

2XLK | pdb_00002xlk

376D | pdb_0000376d

3GOD | pdb_00003god

3J0A | pdb_00003j0a

3J8X | pdb_00003j8x