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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Zhou, L."

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Search Summary

This query matches 293 Structures.

Refinements

Structure Determination Methodology

experimental (293)

Scientific Name of Source Organism

	Homo sapiens (111)
	Mus musculus (39)
	synthetic construct (27)
	Coxsackievirus B1 (20)
	Severe acute respiratory syndrome coronavirus 2 (20)
	Pseudomonas aeruginosa PAO1 (13)
	Nonlabens marinus S1-08 (8)
	Kluyveromyces marxianus (7)
	Caenorhabditis elegans (6)
	Saccharomyces cerevisiae S288C (6)

More...

Taxonomy

	Eukaryota (186)
	Bacteria (62)
	Riboviria (53)
	other sequences (27)
	Duplodnaviria (7)
	Archaea (3)
	Monodnaviria (2)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (190)
	ELECTRON MICROSCOPY (96)
	SOLUTION NMR (6)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (269)
	RNA (29)
	DNA (9)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (57)
	2.0 - 2.5 (61)
	2.5 - 3.0 (50)
	3.0 - 3.5 (56)
	3.5 - 4.0 (44)
	4.0 - 4.5 (5)
	> 4.5 (4)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (6)
	2005 - 2009 (8)
	2010 - 2014 (40)
	2015 - 2019 (66)
	2020 - 2024 (167)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (45)
	Transferases (49)
	Isomerases (22)
	Oxidoreductases (16)
	Translocases (18)
	Ligases (1)
	Lyases (1)

Membrane Protein Annotation

	mpstruc (35)
	PDBTM (38)
	MemProtMD (31)
	OPM (16)

Symmetry Type

	Asymmetric (133)
	Cyclic (108)
	Icosahedral (28)
	Dihedral (5)
	Helical (1)

SCOP Classification

	All beta proteins (14)
	Alpha and beta proteins (a/b) (29)
	Alpha and beta proteins (a+b) (17)
	Artifacts (9)
	Membrane and cell surface proteins and peptides (11)
	All alpha proteins (7)
	Small proteins (1)

AllSelected

1 to 25 of 293 Structures

Page 1 of 12

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1AGK \| pdb_00001agk	Download File View File

THE SOLUTION NMR STRUCTURE OF AN (R)-A-(N6-ADENYL)-STYRENE OXIDE-RAS61 OLIGODEOXYNUCLEOTIDE MODIFIED AT THE SECOND POSITION OF THE CODON 61 REGION, MINIMIZED AVERAGE STRUCTURE

Feng, B., Stone, M.P.

(1995) Biochemistry 34: 14021-14036

Released	1997-08-20
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPGPAPCPRPAPGPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPCPTPTPGPTPCPCPG)-3') (nucleic acid)

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1AGO \| pdb_00001ago	Download File View File

THE SOLUTION NMR STRUCTURE OF AN (S)-A-(N6-ADENYL)-STYRENE OXIDE-RAS61 OLIGODEOXYNUCLEOTIDE MODIFIED AT THE THIRD POSITION OF THE CODON 61 REGION, MINIMIZED AVERAGE STRUCTURE

Feng, B., Stone, M.P.

(1996) Biochemistry 35: 7316-7329

Released	1997-08-20
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPGPAPCPAPYPGPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPCPTPTPGPTPCPCPG)-3') (nucleic acid)

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1AGZ \| pdb_00001agz	Download File View File

THE SOLUTION NMR STRUCTURE OF AN (R)-A-(N6-ADENYL)-STYRENE OXIDE-RAS61 OLIGODEOXYNUCLEOTIDE MODIFIED AT THE THIRD POSITION OF THE CODON 61 REGION, MINIMIZED AVERAGE STRUCTURE

Feng, B., Stone, M.P.

(1995) Biochemistry 34: 14021-14036

Released	1997-08-20
Method	SOLUTION NMR
Macromolecule	DNA (5'-D(CPGPGPAPCPAPRPGPAPAPG)-3') (nucleic acid) DNA (5'-D(CPTPTPCPTPTPGPTPCPCPG)-3') (nucleic acid)

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1F3L \| pdb_00001f3l	Download File View File

CRYSTAL STRUCTURE OF THE CONSERVED CORE OF PROTEIN ARGININE METHYLTRANSFERASE PRMT3

Zhang, X., Zhou, L., Cheng, X.

(2000) EMBO J 19: 3509-3519

Released	2001-03-14
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Rattus norvegicus
Macromolecule	PROTEIN ARGININE METHYLTRANSFERASE PRMT3 (protein)
Unique Ligands	SAH

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1G55 \| pdb_00001g55	Download File View File

Structure of human DNMT2, an enigmatic DNA methyltransferase homologue

Dong, A., Yoder, J.A., Zhang, X., Zhou, L., Bestor, T.H., Cheng, X.

(2001) Nucleic Acids Res 29: 439-448

Released	2001-01-17
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	DNA CYTOSINE METHYLTRANSFERASE DNMT2 (protein)
Unique Ligands	BME, GOL, SAH, SO4

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1M0E \| pdb_00001m0e	Download File View File

ZEBULARINE: A NOVEL DNA METHYLATION INHIBITOR THAT FORMS A COVALENT COMPLEX WITH DNA METHYLTRANSFERASE

Zhou, L., Cheng, X., Connolly, B.A., Dickman, M.J., Hurd, P.J., Hornby, D.P.

(2002) J Mol Biology 321: 591-599

Released	2002-09-18
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Haemophilus haemolyticus
Macromolecule	Modification methylase HhaI (protein) 5'-D(PCPCPAPTPGPCPGPCPTPGPAPC)-3' (nucleic acid) 5'-D(PGPTPCPAPGP(Z)PGPCPAPTPGPG)-3' (nucleic acid)
Unique Ligands	SAH

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1Q0S \| pdb_00001q0s	Download File View File

Binary Structure of T4DAM with AdoHcy

Yang, Z., Horton, J.R., Zhou, L., Zhang, X.J., Dong, A., Zhang, X., Schlagman, S.L., Kossykh, V., Hattman, S., Cheng, X.

(2003) Nat Struct Biol 10: 849-855

Released	2003-09-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Tequatrovirus T4
Macromolecule	DNA adenine methylase (protein)
Unique Ligands	SAH

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1Q0T \| pdb_00001q0t	Download File View File

Ternary Structure of T4DAM with AdoHcy and DNA

Yang, Z., Horton, J.R., Zhou, L., Zhang, X.J., Dong, A., Zhang, X., Schlagman, S.L., Kossykh, V., Hattman, S., Cheng, X.

(2003) Nat Struct Biol 10: 849-855

Released	2003-09-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Tequatrovirus T4
Macromolecule	DNA adenine methylase (protein) 5'-D(APCPAPGPGPAPTPCPCPTPGPT)-3' (nucleic acid)
Unique Ligands	IOD, SAH

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1SVU \| pdb_00001svu	Download File View File

Structure of the Q237W mutant of HhaI DNA methyltransferase: an insight into protein-protein interactions

Dong, A., Zhou, L., Zhang, X., Stickel, S., Roberts, R.J., Cheng, X.

(2004) Biol Chem 385: 373-379

Released	2004-06-29
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Haemophilus haemolyticus
Macromolecule	Modification methylase HhaI (protein)
Unique Ligands	SAH, SO4, UNX

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1VS1 \| pdb_00001vs1	Download File View File

Crystal structure of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase) from Aeropyrum pernix in complex with Mn2+ and PEP

Shumilin, I.A., Zhou, L., Wu, J., Woodard, R.W., Bauerle, R., Kretsinger, R.H.

To be published

Released	2006-05-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Aeropyrum pernix
Macromolecule	3-deoxy-7-phosphoheptulonate synthase (protein)
Unique Ligands	MN, PEP

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1YF3 \| pdb_00001yf3	Download File View File

T4Dam in Complex with AdoHcy and 13-mer Oligonucleotide Making Non- and Semi-specific (~1/4) Contact

Horton, J.R., Liebert, K., Hattman, S., Jeltsch, A., Cheng, X.

(2005) Cell 121: 349-361

Released	2005-05-17
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Tequatrovirus T4
Macromolecule	DNA adenine methylase (protein) 5'-D(APCPCPAPTPGPAPTPCPTPGPAPC)-3' (nucleic acid) 5'-D(TPGPTPCPAPGPAPTPCPAPTPGPG)-3' (nucleic acid)
Unique Ligands	GOL, SAH

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1YFJ \| pdb_00001yfj	Download File View File

T4Dam in Complex with AdoHcy and 15-mer Oligonucleotide Showing Semi-specific and Specific Contact

Horton, J.R., Liebert, K., Hattman, S., Jeltsch, A., Cheng, X.

(2005) Cell 121: 349-361

Released	2005-05-17
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Tequatrovirus T4
Macromolecule	DNA adenine methylase (protein) 5'-D(TPCPAPCPAPGPGPAPTPCPCPTPGPTP*G)-3' (nucleic acid)
Unique Ligands	CA, CL, SAH

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1YFL \| pdb_00001yfl	Download File View File

T4Dam in Complex with Sinefungin and 16-mer Oligonucleotide Showing Semi-specific and Specific Contact and Flipped Base

Horton, J.R., Liebert, K., Hattman, S., Jeltsch, A., Cheng, X.

(2005) Cell 121: 349-361

Released	2005-05-17
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Tequatrovirus T4
Macromolecule	DNA adenine methylase (protein) 5'-D(PTPCPAPCPAPGPGPAPTPCPCPTPGPTPGPA)-3' (nucleic acid)
Unique Ligands	SFG

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2BW3 \| pdb_00002bw3	Download File View File

Three-dimensional structure of the Hermes DNA transposase

Hickman, A.B., Perez, Z.N., Zhou, L., Musingarimi, P., Ghirlando, R., Hinshaw, J.E., Craig, N.L., Dyda, F.

(2005) Nat Struct Mol Biol 12: 715

Released	2005-07-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Musca domestica
Macromolecule	TRANSPOSASE (protein)

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2M0X \| pdb_00002m0x	Download File View File

Solution structure of U14Ub1, an engineered ubiquitin variant with increased affinity for USP14

Phillips, A.H., Fairbrother, W.J., Corn, J.E.

(2013) Proc Natl Acad Sci U S A 110: 11379-11384

Released	2013-06-26
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	engineered ubiquitin variant (protein)

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2QIF \| pdb_00002qif	Download File View File

Crystal structure of a metallochaperone with a tetranuclear Cu(I) cluster

West, C., Singleton, C., Kihlken, M.A., Le Brun, N.E., Hemmings, A.M.

(2009) Biochemistry 48: 9324-9326

Released	2008-07-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Bacillus subtilis
Macromolecule	Copper chaperone copZ (protein)
Unique Ligands	ACT, CA, CU1, GOL

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3H42 \| pdb_00003h42	Download File View File

Crystal structure of PCSK9 in complex with Fab from LDLR competitive antibody

Piper, D.E., Walker, N.P.C., Romanow, W.G., Thibault, S.T., Tsai, M.M., Yang, E.

(2009) Proc Natl Acad Sci U S A 106: 9820-9825

Released	2009-05-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Fab from LDLR competitive antibody: Heavy chain (protein) Fab from LDLR competitive antibody: Light chain (protein) Proprotein convertase subtilisin/kexin type 9 (protein)
Unique Ligands	NA

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3I9Z \| pdb_00003i9z	Download File View File

Crystal structure of a metallochaperone with a trinuclear Cu(I) cluster

Hearnshaw, S.J., Zhou, L., Le Brun, N.E., Hemmings, A.M.

(2009) Biochem J 424: 347-356

Released	2009-11-17
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bacillus subtilis
Macromolecule	Copper chaperone copZ (protein)
Unique Ligands	CU1

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3L1L \| pdb_00003l1l	Download File View File

Structure of Arg-bound Escherichia coli AdiC

Gao, X., Zhou, L., Shi, Y.

(2010) Nature 463: 828-832

Released	2010-02-02
Method	X-RAY DIFFRACTION 3.002 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Arginine/agmatine antiporter (protein)
Unique Ligands	ARG, BNG

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3LRB \| pdb_00003lrb	Download File View File

Structure of E. coli AdiC

Gao, X., Lu, F., Zhou, L., Shi, Y.

(2009) Science 324: 1565-1568

Released	2010-02-23
Method	X-RAY DIFFRACTION 3.61 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Arginine/agmatine antiporter (protein)

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3LRC \| pdb_00003lrc	Download File View File

Structure of E. coli AdiC (P1)

Gao, X., Lu, F., Zhou, L., Shi, Y.

(2009) Science 324: 1565-1568

Released	2010-02-23
Method	X-RAY DIFFRACTION 4.004 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Arginine/agmatine antiporter (protein)

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3N9L \| pdb_00003n9l	Download File View File

ceKDM7A from C.elegans, complex with H3K4me3 peptide and NOG

Yang, Y., Hu, L., Wang, P., Hou, H., Chen, C.D., Xu, Y.

(2010) Cell Res 20: 886-898

Released	2010-06-30
Method	X-RAY DIFFRACTION 2.796 Å
Organisms	Caenorhabditis elegans
Macromolecule	Histone H3 peptide (protein) Putative uncharacterized protein (protein)
Unique Ligands	FE2, OGA, ZN

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3N9M \| pdb_00003n9m	Download File View File

ceKDM7A from C.elegans, alone

Yang, Y., Hu, L., Wang, P., Hou, H., Chen, C.D., Xu, Y.

(2010) Cell Res 20: 886-898

Released	2010-06-30
Method	X-RAY DIFFRACTION 2.493 Å
Organisms	Caenorhabditis elegans
Macromolecule	Putative uncharacterized protein (protein)
Unique Ligands	FE2, ZN

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3N9N \| pdb_00003n9n	Download File View File

ceKDM7A from C.elegans, complex with H3K4me3K9me2 peptide and NOG

Yang, Y., Hu, L., Wang, P., Hou, H., Chen, C.D., Xu, Y.

(2010) Cell Res 20: 886-898

Released	2010-06-30
Method	X-RAY DIFFRACTION 2.299 Å
Organisms	Caenorhabditis elegans
Macromolecule	Histone H3 peptide (protein) Putative uncharacterized protein (protein)
Unique Ligands	FE2, OGA, ZN

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3N9O \| pdb_00003n9o	Download File View File

ceKDM7A from C.elegans, complex with H3K4me3 peptide, H3K9me2 peptide and NOG

Yang, Y., Hu, L., Wang, P., Hou, H., Chen, C.D., Xu, Y.

(2010) Cell Res 20: 886-898

Released	2010-06-30
Method	X-RAY DIFFRACTION 2.309 Å
Organisms	Caenorhabditis elegans
Macromolecule	Histone H3 peptide (protein) Putative uncharacterized protein (protein)
Unique Ligands	FE2, OGA, ZN

1 to 25 of 293 Structures

Page 1 of 12

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AGK | pdb_00001agk

1AGO | pdb_00001ago

1AGZ | pdb_00001agz

1F3L | pdb_00001f3l

1G55 | pdb_00001g55

1M0E | pdb_00001m0e

1Q0S | pdb_00001q0s

1Q0T | pdb_00001q0t

1SVU | pdb_00001svu

1VS1 | pdb_00001vs1

1YF3 | pdb_00001yf3

1YFJ | pdb_00001yfj

1YFL | pdb_00001yfl

2BW3 | pdb_00002bw3

2M0X | pdb_00002m0x

2QIF | pdb_00002qif

3H42 | pdb_00003h42

3I9Z | pdb_00003i9z

3L1L | pdb_00003l1l

3LRB | pdb_00003lrb

3LRC | pdb_00003lrc

3N9L | pdb_00003n9l

3N9M | pdb_00003n9m

3N9N | pdb_00003n9n

3N9O | pdb_00003n9o