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234,440 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: BIRD ID(s) = PRD_002383

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Search Summary

This query matches 104 Structures.

Refinements

Structure Determination Methodology

experimental (104)

Scientific Name of Source Organism

	Mycobacterium tuberculosis CDC1551 (104)
	synthetic construct (5)
	Mycobacterium tuberculosis (2)
	Mycobacterium tuberculosis H37Rv (1)

Taxonomy

	Bacteria (104)
	other sequences (5)

Experimental Method

X-RAY DIFFRACTION (104)

Polymer Entity Type

	Protein (104)
	DNA (1)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (50)
	2.0 - 2.5 (25)
	2.5 - 3.0 (18)
	3.0 - 3.5 (7)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (2)
	2010 - 2014 (7)
	2015 - 2019 (84)
	2020 - 2024 (10)

Enzyme Classification Name

	Transferases (24)
	Oxidoreductases (18)
	Hydrolases (10)
	Lyases (10)
	Isomerases (1)
	Ligases (2)

Symmetry Type

	Cyclic (55)
	Asymmetric (35)
	Dihedral (20)

SCOP Classification

	All alpha proteins (35)
	Alpha and beta proteins (a/b) (18)
	Artifacts (6)
	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 104 Structures

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1PQW \| pdb_00001pqw	Download File View File

Putative enoyl reductase domain of polyketide synthase

Gogos, A., Mu, H., Shapiro, L., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2003-07-08
Method	X-RAY DIFFRACTION 2.66 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	polyketide synthase (protein)
Unique Ligands	CA

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1YBT \| pdb_00001ybt	Download File View File

MYCOBACTERIUM TUBERCULOSIS ADENYLYL CYCLASE, RV1900C CHD

Sinha, S.C., Wetterer, M., Sprang, S.R., Schultz, J.E., Linder, J.U.

(2005) EMBO J 24: 663-673

Released	2005-02-15
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	hydrolase, alpha/beta hydrolase fold family (protein)

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2AP9 \| pdb_00002ap9	Download File View File

Crystal structure of acetylglutamate kinase from Mycobacterium tuberculosis CDC1551

Rajashankar, K.R., Kniewel, R., Lee, K., Lima, C.D., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2005-08-30
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	acetylglutamate kinase (protein)
Unique Ligands	MG, NI

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4PMN \| pdb_00004pmn	Download File View File

Crystal structure of the Mycobacterium tuberculosis Tat-secreted protein Rv2525c in complex with MES (monoclinic crystal form I)

Bellinzoni, M., Haouz, A., Shepard, W., Alzari, P.M.

(2014) J Struct Biol 188: 156-164

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.44 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Tat-secreted protein Rv2525c (protein)
Unique Ligands	GOL, MES, SO4

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4PMO \| pdb_00004pmo	Download File View File

Crystal structure of the Mycobacterium tuberculosis Tat-secreted protein Rv2525c, monoclinic crystal form I

Bellinzoni, M., Haouz, A., Shepard, W., Alzari, P.M.

(2014) J Struct Biol 188: 156-164

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.33 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Tat-secreted protein Rv2525c (protein)
Unique Ligands	FMT, GOL, NA

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4PMQ \| pdb_00004pmq	Download File View File

Crystal structure of the Mycobacterium tuberculosis Tat-secreted protein Rv2525c in complex with L-tartrate (orthorhombic crystal form)

Bellinzoni, M., Haouz, A., Shepard, W., Alzari, P.M.

(2014) J Struct Biol 188: 156-164

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Tat-secreted protein Rv2525c (protein)
Unique Ligands	GOL, TLA

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4PMR \| pdb_00004pmr	Download File View File

Crystal structure of the Mycobacterium tuberculosis Tat-secreted protein Rv2525c in complex with HEPES (monoclinic crystal form II)

Bellinzoni, M., Haouz, A., Shepard, W., Alzari, P.M.

(2014) J Struct Biol 188: 156-164

Released	2014-10-08
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Tat-secreted protein Rv2525c (protein)
Unique Ligands	EPE, NA

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4Q6U \| pdb_00004q6u	Download File View File

Crystal structure of a putative uncharacterized protein from Mycobacterium tuberculosis

Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2018) Protein Sci 27: 568-572

Released	2014-06-18
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	1PE

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4TR7 \| pdb_00004tr7	Download File View File

Crystal structure of DNA polymerase sliding clamp from Mycobaterium tuberculosis

Olieric, V., Burnouf, D., Ennifar, E., Wolff, P.

(2014) J Med Chem 57: 7565-7576

Released	2014-09-10
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	DNA polymerase III subunit beta (protein)

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4TRJ \| pdb_00004trj	Download File View File

Crystal structure of Mycobacterium tuberculosis enoyl reductase (INHA) complexed with N-(3-bromophenyl)-1-cyclohexyl-5-oxopyrrolidine-3-carboxamide, refined with new ligand restraints

He, X., Alian, A., Stroud, R.M., Ortiz de Montellano, P.R.

(2006) J Med Chem 6308-6323

Released	2014-08-13
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADH] (protein)
Unique Ligands	665, NAD

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4U33 \| pdb_00004u33	Download File View File

Structure of Mtb GlgE bound to maltose

Ronning, D.R., Lindenberger, J.J.

(2015) Sci Rep 5: 12830-12830

Released	2015-07-22
Method	X-RAY DIFFRACTION 3.293 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase (protein)
Unique branched monosaccharides	GLC

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4U3C \| pdb_00004u3c	Download File View File

Docking Site of Maltohexaose in the Mtb GlgE

Ronning, D.R., Lindenberger, J.J.

(2015) Sci Rep 5: 12830-12830

Released	2015-07-22
Method	X-RAY DIFFRACTION 3.98 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Alpha-1,4-glucan:maltose-1-phosphate maltosyltransferase (protein)
Unique branched monosaccharides	GLC

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4W1V \| pdb_00004w1v	Download File View File

Crystal structure of 7,8-diaminopelargonic acid synthase (BioA) from Mycobacterium tuberculosis, complexed with a thiazole inhibitor

Finzel, B.C., Dai, R.

(2015) Chem Biol 22: 76-86

Released	2015-02-04
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (protein)
Unique Ligands	3GS, CL, EDO, PEG, PLP

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4W1W \| pdb_00004w1w	Download File View File

Crystal structure of 7,8-diaminopelargonic acid synthase (BioA) from Mycobacterium tuberculosis, complexed with 7-(diethylamino)-3-(thiophene-2-carbonyl)-2H-chromen-2-one

Finzel, B.C., Ran, D.

(2015) Chem Biol 22: 76-86

Released	2015-02-04
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (protein)
Unique Ligands	3G8, CL, EDO, PLP

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4W1X \| pdb_00004w1x	Download File View File

Crystal structure of 7,8-diaminopelargonic acid synthase (BioA) from Mycobacterium tuberculosis, complexed with 1-(4-(4-(3-chlorobenzoyl)piperazin-1-yl)phenyl)ethanone

Finzel, B.C., Dai, R.

(2015) Chem Biol 22: 76-86

Released	2015-02-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase (protein)
Unique Ligands	3G9, EDO, PEG, PLP

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4X0X \| pdb_00004x0x	Download File View File

The structure of AhpE from Mycobacterium tuberculosis revisited

Pallo, A., Messens, J.

(2016) Sci Rep 6: 30369-30369

Released	2016-07-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Putative peroxiredoxin MT2298 (protein)

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4YF4 \| pdb_00004yf4	Download File View File

Crystal structure of Rv1284 in the presence of polycarpine at mildly acidic pH

Hofmann, A.

(2015) FEBS J 282: 2708-2721

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Beta-carbonic anhydrase 1 (protein)
Unique Ligands	CL, MG, ZN

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4YF5 \| pdb_00004yf5	Download File View File

Crystal structure of Rv1284 in the presence of polycarpine at acidic pH

Hofmann, A.

(2015) FEBS J 282: 2708-2721

Released	2015-05-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Beta-carbonic anhydrase 1 (protein)
Unique Ligands	CL, ZN

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4YF6 \| pdb_00004yf6	Download File View File

Crystal structure of oxidised Rv1284

Hofmann, A.

(2015) FEBS J 282: 2708-2721

Released	2015-05-06
Method	X-RAY DIFFRACTION 3.002 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Beta-carbonic anhydrase 1 (protein)
Unique Ligands	CL, MG, ZN

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4YNR \| pdb_00004ynr	Download File View File

DosS GAFA Domain Reduced CO Bound Crystal Structure

Madrona, Y.

(2015) J Biological Chem 290: 10000-10017

Released	2016-02-24
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Redox sensor histidine kinase response regulator DevS (protein)
Unique Ligands	CMO, HEM

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4YOF \| pdb_00004yof	Download File View File

DosS GAFA Domain Reduced Nitric Oxide Bound Crystal Structure

Madrona, Y.

(2015) J Biological Chem 290: 10000-10017

Released	2016-03-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Redox sensor histidine kinase response regulator DevS (protein)
Unique Ligands	HEM, NO

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4ZFQ \| pdb_00004zfq	Download File View File

Structure of M. tuberculosis (3,3) L,D-Transpeptidase, LdtMt5. (Meropenen-adduct form)

Basta, L., Ghosh, A., Lamichhane, G., Bianchet, M.A.

(2015) J Biological Chem 290: 25670-25685

Released	2015-09-02
Method	X-RAY DIFFRACTION 2.799 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	L,D-transpeptidase 5 (protein)
Unique Ligands	DWZ, PEG

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5BTL \| pdb_00005btl	Download File View File

Crystal structure of a topoisomerase II complex

Blower, T.R., Williamson, B.H., Kerns, R.J., Berger, J.M.

(2016) Proc Natl Acad Sci U S A 113: 1706-1713

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mycobacterium tuberculosis CDC1551 Mycobacterium tuberculosis H37Rv synthetic construct
Macromolecule	DNA gyrase subunit A (protein) DNA gyrase subunit B (protein) DNA substrate 24-mer GGTCATGAATGACTATGCACGTAA (nucleic acid) DNA substrate 24-mer TTACGTGCATAGTCATTCATGACC (nucleic acid)
Unique Ligands	8MX, MG

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5CPF \| pdb_00005cpf	Download File View File

Compensation of the effect of isoleucine to alanine mutation by designed inhibition in the InhA enzyme

Li, H.-J., Lai, C.-T., Pan, P., Yu, W., Shah, S., Bommineni, G.R., Perrone, V., Garcia-Diaz, M., Tonge, P.J., Simmerling, C.

(2015) Biochemistry 54: 4683-4691

Released	2015-08-12
Method	X-RAY DIFFRACTION 3.409 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Enoyl-[acyl-carrier-protein] reductase [NADH] (protein)
Unique Ligands	53K, NAD

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5CWA \| pdb_00005cwa	Download File View File

Structure of Anthranilate Synthase Component I (TrpE) from Mycobacterium tuberculosis with inhibitor bound

Johnston, J.M., Bashiri, G., Evans, G.L., Lott, J.S., Baker, E.N.

(2015) Acta Crystallogr D Biol Crystallogr 71: 2297-2308

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mycobacterium tuberculosis CDC1551
Macromolecule	Anthranilate synthase component 1 (protein)
Unique Ligands	0GA, GOL, SO4, UNL

1 to 25 of 104 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1PQW | pdb_00001pqw

1YBT | pdb_00001ybt

2AP9 | pdb_00002ap9

4PMN | pdb_00004pmn

4PMO | pdb_00004pmo

4PMQ | pdb_00004pmq

4PMR | pdb_00004pmr

4Q6U | pdb_00004q6u

4TR7 | pdb_00004tr7

4TRJ | pdb_00004trj

4U33 | pdb_00004u33

4U3C | pdb_00004u3c

4W1V | pdb_00004w1v

4W1W | pdb_00004w1w

4W1X | pdb_00004w1x

4X0X | pdb_00004x0x

4YF4 | pdb_00004yf4

4YF5 | pdb_00004yf5

4YF6 | pdb_00004yf6

4YNR | pdb_00004ynr

4YOF | pdb_00004yof

4ZFQ | pdb_00004zfq

5BTL | pdb_00005btl

5CPF | pdb_00005cpf

5CWA | pdb_00005cwa