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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = 2PO

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Search Summary

This query matches 11 Structures.

Refinements

Structure Determination Methodology

experimental (11)

Scientific Name of Source Organism

	Bacillus sp. snu-7 (2)
	Eleftheria terrae (2)
	Homo sapiens (1)
	Pasteurella multocida (1)
	Saccharomyces cerevisiae (1)
	Saccharomyces cerevisiae S288C (1)
	Staphylococcus aureus (1)
	Staphylococcus simulans (1)
	Streptomyces peucetius subsp. caesius ATCC 27952 (1)
	Stutzerimonas stutzeri (1)

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Taxonomy

	Bacteria (8)
	Eukaryota (3)

Experimental Method

	X-RAY DIFFRACTION (8)
	SOLID-STATE NMR (3)

Polymer Entity Type

	Protein (11)
	DNA (1)

Refinement Resolution (Å)

	1.5 - 2.0 (6)
	2.5 - 3.0 (2)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (3)
	2015 - 2019 (3)
	2020 - 2024 (4)

Enzyme Classification Name

	Lyases (3)
	Hydrolases (1)

Symmetry Type

	Cyclic (7)
	Asymmetric (4)

SCOP Classification

	All alpha proteins (2)
	Alpha and beta proteins (a+b) (2)
	Alpha and beta proteins (a/b) (1)
	Artifacts (1)

AllSelected

1 to 11 of 11 Structures

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1P4E \| pdb_00001p4e	Download File View File

Flpe W330F mutant-DNA Holliday Junction Complex

Rice, P.A., Chen, Y.

(2003) J Biological Chem 278: 24800-24807

Released	2003-05-20
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Recombinase FLP protein (protein) 33-MER (nucleic acid) 5'-D(TPAPAPGPTPTPCPCPTPAPTPTPC)-3' (nucleic acid) 5'-D(TPTPTPAPAPAPAPGPAPAPTPAPGPGPAPAPCPTPTP*C)-3' (nucleic acid)
Unique Ligands	2PO

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2EBF \| pdb_00002ebf	Download File View File

Crystal structures reveal a thiol-protease like catalytic triad in the C-terminal region of Pasteurella multocida toxin

Kitadokoro, K., Horiguchi, Y., Kamitani, S.

(2007) Proc Natl Acad Sci U S A 104: 5139-5144

Released	2007-03-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pasteurella multocida
Macromolecule	Dermonecrotic toxin (protein)
Unique Ligands	2PO
Unique branched monosaccharides	GLC

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2INU \| pdb_00002inu	Download File View File

Crystal structure of Inulin fructotransferase in the absence of substrate

Rhee, S., Jung, W.S.

(2007) J Biological Chem 282: 8414-8423

Released	2006-12-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus sp. snu-7
Macromolecule	Inulin fructotransferase (protein)
Unique Ligands	2PO

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2INV \| pdb_00002inv	Download File View File

Crystal structure of Inulin fructotransferase in the presence of di-fructose

Rhee, S., Jung, W.S.

(2007) J Biological Chem 282: 8414-8423

Released	2006-12-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus sp. snu-7
Macromolecule	Inulin fructotransferase (protein)
Unique Ligands	2PO
Unique branched monosaccharides	FRU

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5JVB \| pdb_00005jvb	Download File View File

1.95A resolution structure of PtxB from Trichodesmium erythraeum IMS101 in complex with phosphite

Bisson, C., Adams, N.B.P., Polyviou, D., Bibby, T.S., Hunter, C.N., Hitchcock, A.

(2017) Nat Commun 8: 1746-1746

Released	2017-11-29
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Trichodesmium erythraeum IMS101
Macromolecule	Phosphonate ABC transporter, periplasmic phosphonate-binding protein (protein)
Unique Ligands	2PO

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5O2J \| pdb_00005o2j	Download File View File

Pseudomonas stutzeri PtxB in complex with phosphite to 1.52 A resolution

Bisson, C., Hitchcock, A.

(2017) Nat Commun 8: 1746-1746

Released	2017-12-06
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Stutzerimonas stutzeri
Macromolecule	Probable phosphite transport system-binding protein PtxB (protein)
Unique Ligands	2PO, EDO

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6OC9 \| pdb_00006oc9	Download File View File

S8 phosphorylated beta amyloid 40 fibrils

Qiang, W., Hu, Z.W.

(2019) Proc Natl Acad Sci U S A 116: 11253-11258

Released	2019-06-05
Method	SOLID-STATE NMR
Organisms	Homo sapiens
Macromolecule	Amyloid-beta precursor protein (protein)
Unique Ligands	2PO

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6TRQ \| pdb_00006trq	Download File View File

S.c. Scavenger Decapping Enzyme DcpS in complex with the capped RNA dinucleotide m7G-GU

Fuchs, A.-L., Neu, A., Sprangers, R.

(2020) Proc Natl Acad Sci U S A 117: 19237-19244

Released	2020-07-22
Method	X-RAY DIFFRACTION 2.944 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	m7GpppX diphosphatase (protein)
Unique Ligands	0G, 2PO, M7G, SO4, U

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6YFY \| pdb_00006yfy	Download File View File

Solid-state NMR structure of the D-Arg4,L10-teixobactin - Lipid II complex in lipid bilayers.

Weingarth, M.H., Shukla, R.

(2020) Nat Commun 11: 2848-2848

Released	2020-06-10
Method	SOLID-STATE NMR
Organisms	Eleftheria terrae Staphylococcus simulans
Macromolecule	D-Arg4,Leu10-Teixobactin (protein) Lipid II (protein)
Unique Ligands	2PO, P1W
Unique branched monosaccharides	MUB, NAG

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7QGV \| pdb_00007qgv	Download File View File

Solid-state NMR structure of Teixobactin-Lipid II.

Weingarth, M.H., Shukla, R.

(2022) Nature 608: 390-396

Released	2022-08-03
Method	SOLID-STATE NMR
Organisms	Eleftheria terrae Staphylococcus aureus
Macromolecule	Lipid II (protein) Teixobactin (protein)
Unique Ligands	2PO, P1W
Unique branched monosaccharides	MUB, NAG

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8HSN \| pdb_00008hsn	Download File View File

Crystal structure of DFA I-forming Inulin Lyase from Streptomyces peucetius subsp. caesius ATCC 27952

Cheng, M., Rao, Y.J., Mu, W.M.

(2024) J Agric Food Chem 72: 17030-17040

Released	2023-12-27
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Streptomyces peucetius subsp. caesius ATCC 27952
Macromolecule	Fructotransferase (protein)
Unique Ligands	1PE, 2PO, EDO, GOL, PEG

1 to 11 of 11 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1P4E | pdb_00001p4e

Flpe W330F mutant-DNA Holliday Junction Complex

2EBF | pdb_00002ebf

Crystal structures reveal a thiol-protease like catalytic triad in the C-terminal region of Pasteurella multocida toxin

2INU | pdb_00002inu

Crystal structure of Inulin fructotransferase in the absence of substrate

2INV | pdb_00002inv

Crystal structure of Inulin fructotransferase in the presence of di-fructose

5JVB | pdb_00005jvb

1.95A resolution structure of PtxB from Trichodesmium erythraeum IMS101 in complex with phosphite

5O2J | pdb_00005o2j

Pseudomonas stutzeri PtxB in complex with phosphite to 1.52 A resolution

6OC9 | pdb_00006oc9

S8 phosphorylated beta amyloid 40 fibrils

6TRQ | pdb_00006trq

S.c. Scavenger Decapping Enzyme DcpS in complex with the capped RNA dinucleotide m7G-GU

6YFY | pdb_00006yfy

Solid-state NMR structure of the D-Arg4,L10-teixobactin - Lipid II complex in lipid bilayers.

7QGV | pdb_00007qgv

Solid-state NMR structure of Teixobactin-Lipid II.

8HSN | pdb_00008hsn

Crystal structure of DFA I-forming Inulin Lyase from Streptomyces peucetius subsp. caesius ATCC 27952

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1P4E | pdb_00001p4e

2EBF | pdb_00002ebf

2INU | pdb_00002inu

2INV | pdb_00002inv

5JVB | pdb_00005jvb

5O2J | pdb_00005o2j

6OC9 | pdb_00006oc9

6TRQ | pdb_00006trq

6YFY | pdb_00006yfy

7QGV | pdb_00007qgv

8HSN | pdb_00008hsn