RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Chemical ID(s) = DTV

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Chemical Attributes

Help

NOT

Count

Add Subquery

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 34 Structures.

Refinements

Structure Determination Methodology

experimental (34)

Scientific Name of Source Organism

	Homo sapiens (11)
	Methanocaldococcus jannaschii (2)
	Mycobacterium tuberculosis H37Rv (2)
	Cereibacter sphaeroides 2.4.1 (1)
	Corynebacterium diphtheriae (1)
	Drosophila melanogaster (1)
	Escherichia coli (1)
	Escherichia coli K-12 (1)
	Human immunodeficiency virus 1 (1)
	Klebsiella oxytoca (1)

More...

Taxonomy

	Eukaryota (20)
	Bacteria (11)
	Archaea (2)
	Riboviria (1)

Experimental Method

X-RAY DIFFRACTION (34)

Polymer Entity Type

	Protein (34)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (15)
	2.0 - 2.5 (11)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (7)
	2010 - 2014 (17)
	2015 - 2019 (6)
	2020 - 2024 (1)
	2025 - 2029 (1)

Enzyme Classification Name

	Oxidoreductases (9)
	Hydrolases (8)
	Transferases (6)
	Isomerases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (22)
	Cyclic (11)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a/b) (15)
	All alpha proteins (6)
	All beta proteins (2)
	Artifacts (5)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 34 Structures

Page 1 of 2

Sort by

Explore in 3D

1NYT \| pdb_00001nyt	Download File View File

SHIKIMATE DEHYDROGENASE AroE COMPLEXED WITH NADP+

Roszak, A.W., Lapthorn, A.J.

(2003) J Biological Chem 278: 19463-19472

Released	2003-03-04
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	Shikimate 5-dehydrogenase (protein)
Unique Ligands	DTV, NAP, SO4

Explore in 3D

1W19 \| pdb_00001w19	Download File View File

Lumazine Synthase from Mycobacterium tuberculosis bound to 3-(1,3,7- trihydro-9-D-ribityl-2,6,8-purinetrione-7-yl)propane 1-phosphate

Morgunova, E., Meining, W., Illarionov, B., Haase, I., Fischer, M., Cushman, M., Bacher, A., Ladenstein, R.

(2005) Biochemistry 44: 2746

Released	2005-03-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mycobacterium tuberculosis
Macromolecule	6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE (protein)
Unique Ligands	ACY, D1D, DTU, DTV, K, T1P, T2P, T4P, T5P

Explore in 3D

1YVJ \| pdb_00001yvj	Download File View File

Crystal structure of the Jak3 kinase domain in complex with a staurosporine analogue

Boggon, T.J., Li, Y., Manley, P.W., Eck, M.J.

(2005) Blood 106: 996-1002

Released	2005-05-24
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	Homo sapiens
Macromolecule	Tyrosine-protein kinase JAK3 (protein)
Unique Ligands	4ST, DTV

Explore in 3D

2EAK \| pdb_00002eak	Download File View File

Crystal structure of human galectin-9 N-terminal CRD in complex with lactose

Nagae, M., Nakamura-Tsuruta, S., Nishi, N., Nakamura, T., Hirabayashi, J., Wakatsuki, S., Kato, R.

(2008) J Mol Biology 375: 119-135

Released	2007-09-25
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens
Macromolecule	Galectin-9 (protein)
Unique Ligands	DTV, GOL
Unique branched monosaccharides	GAL, GLC

Explore in 3D

2RAM \| pdb_00002ram	Download File View File

A NOVEL DNA RECOGNITION MODE BY NF-KB P65 HOMODIMER

Chen, Y.Q., Ghosh, S., Ghosh, G.

(1998) Nat Struct Biol 5: 67-73

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (TRANSCRIPTION FACTOR NF-KB P65) (protein) DNA (5'-D(CPGPGPCPTPGPGPAPAPAPTP(5IU)P(5IU)PCPCPAPGPCPCPG)-3') (nucleic acid)
Unique Ligands	DTV

Explore in 3D

2YHI \| pdb_00002yhi	Download File View File

Trypanosoma brucei PTR1 in complex with inhibitor WH16

Nerini, E., Dawson, A., Hunter, W.N., Costi, M.P.

(2017) ACS Omega 2: 5666-5683

Released	2012-05-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Trypanosoma brucei
Macromolecule	PTERIDINE REDUCTASE, PUTATIVE (protein)
Unique Ligands	ACT, DTT, DTU, DTV, NAP, W16

Explore in 3D

3AO2 \| pdb_00003ao2	Download File View File

Fragment-based approach to the design of ligands targeting a novel site on HIV-1 integrase

Wielens, J., Chalmers, D.K., Headey, S.J., Parker, M.W., Scanlon, M.J.

(2011) ChemMedChem 6: 258-261

Released	2011-03-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	AVX, CD, CL, DTT, DTV, MG, SO4

Explore in 3D

3F46 \| pdb_00003f46	Download File View File

The Crystal Structure of C176A Mutated [Fe]-Hydrogenase (Hmd) Holoenzyme from Methanocaldococcus jannaschii

Hiromoto, T., Vogt, S., Warkentin, E., Thauer, R.K., Shima, S., Ermler, U.

(2009) FEBS Lett 583: 585-590

Released	2009-02-10
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	5,10-methenyltetrahydromethanopterin hydrogenase (protein)
Unique Ligands	CMO, DTV, FE2, I2C

Explore in 3D

3G36 \| pdb_00003g36	Download File View File

Crystal structure of the human DPY-30-like C-terminal domain

Wang, X., Lou, Z., Bartlam, M., Rao, Z.

(2009) J Mol Biology 390: 530-537

Released	2009-06-30
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Homo sapiens
Macromolecule	Protein dpy-30 homolog (protein)
Unique Ligands	DTT, DTU, DTV, HEZ

Explore in 3D

3H65 \| pdb_00003h65	Download File View File

The Crystal Structure of C176A Mutated [Fe]-Hydrogenase (Hmd) Holoenzyme in Complex with Methylenetetrahydromethanopterin

Hiromoto, T., Warkentin, E., Shima, S., Ermler, U.

(2009) Angew Chem Int Ed Engl 48: 6457-6460

Released	2009-09-01
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	5,10-methenyltetrahydromethanopterin hydrogenase (protein)
Unique Ligands	CMO, DTV, FE2, H4M, I2C

Explore in 3D

3I8R \| pdb_00003i8r	Download File View File

Crystal structure of the heme oxygenase from Corynebacterium diphtheriae (HmuO) in complex with heme binding ditiothreitol (DTT)

Matsui, T., Unno, M., Ikeda-Saito, M.

(2010) Inorg Chem 49: 3602-3609

Released	2010-05-19
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Corynebacterium diphtheriae
Macromolecule	Heme oxygenase (protein)
Unique Ligands	DTV, HEM, SO4

Explore in 3D

3I9T \| pdb_00003i9t	Download File View File

Crystal structure of the rat heme oxygenase (HO-1) in complex with heme binding dithiothreitol (DTT)

Matsui, T., Unno, M., Ikeda-Saito, M.

(2010) Inorg Chem 49: 3602-3609

Released	2010-05-19
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Rattus norvegicus
Macromolecule	Heme oxygenase 1 (protein)
Unique Ligands	DTV, HEM

Explore in 3D

3IIM \| pdb_00003iim	Download File View File

The structure of hCINAP-dADP complex at 2.0 angstroms resolution

Zographos, S.E., Drakou, C.E., Leonidas, D.D.

(2012) Proteins 80: 206-220

Released	2010-10-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Coilin-interacting nuclear ATPase protein (protein)
Unique Ligands	DAT, DTV, EPE, SO4

Explore in 3D

3K2G \| pdb_00003k2g	Download File View File

Crystal structure of a Resiniferatoxin-binding protein from Rhodobacter sphaeroides

Kumaran, D., Burley, S.K., Swaminathan, S., New York SGX Research Center for Structural Genomics (NYSGXRC)

To be published

Released	2009-10-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Cereibacter sphaeroides 2.4.1
Macromolecule	Resiniferatoxin-binding, phosphotriesterase-related protein (protein)
Unique Ligands	DTV, MG, ZN

Explore in 3D

3MVX \| pdb_00003mvx	Download File View File

X-ray structure of the reduced NikA/1 hybrid, NikA/1-Red

Cavazza, C., Bochot, C., Rousselot-Pailley, P., Carpentier, P., Cherrier, M.V., Martin, L., Marchi-Delapierre, C., Fontecilla-Camps, J.C., Menage, S.

(2010) Nat Chem 2: 1069-1076

Released	2011-02-09
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	Nickel-binding periplasmic protein (protein)
Unique Ligands	ACT, BHZ, CL, DTU, DTV, FE2, GOL, SO4

Explore in 3D

3NEC \| pdb_00003nec	Download File View File

Crystal Structure of Toxoplasma gondii Profilin

Kucera, K., Modis, Y.

(2010) J Mol Biology 403: 616-629

Released	2010-09-29
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Toxoplasma gondii
Macromolecule	Inflammatory profilin (protein)
Unique Ligands	DTV, SO4

Explore in 3D

3P7X \| pdb_00003p7x	Download File View File

Crystal structure of an atypical two-cysteine peroxiredoxin (SAOUHSC_01822) from Staphylococcus aureus NCTC8325

Bhattacharyya, S., Dutta, D., Ghosh, A.K., Das, A.K.

To be published

Released	2011-10-19
Method	X-RAY DIFFRACTION 1.96 Å
Organisms	Staphylococcus aureus subsp. aureus NCTC 8325
Macromolecule	Probable thiol peroxidase (protein)
Unique Ligands	DTU, DTV, PG4, SO4

Explore in 3D

3P9C \| pdb_00003p9c	Download File View File

Crystal structure of perennial ryegrass LpOMT1 bound to SAH

Louie, G.V., Noel, J.P., Bowman, M.E.

(2010) Plant Cell 22: 4114-4127

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lolium perenne
Macromolecule	Caffeic acid O-methyltransferase (protein)
Unique Ligands	ACT, DTV, EDO, SAH

Explore in 3D

3R0H \| pdb_00003r0h	Download File View File

Structure of INAD PDZ45 in complex with NG2 peptide

Wei, Z., Liu, W., Zhang, M.

(2011) Cell 145: 1088-1101

Released	2011-11-30
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Drosophila melanogaster
Macromolecule	Inactivation-no-after-potential D protein (protein) NG2 (protein)
Unique Ligands	DTT, DTV, SO4

Explore in 3D

3SBC \| pdb_00003sbc	Download File View File

Crystal structure of Saccharomyces cerevisiae TSA1C47S mutant protein

Tairum Jr., C.A., Horta, B.B., Netto, L.E.S., Oliveira, M.A.

(2012) J Mol Biology 424: 28-41

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Peroxiredoxin TSA1 (protein)
Unique Ligands	DTU, DTV

Explore in 3D

3UB4 \| pdb_00003ub4	Download File View File

S180L variant of TIR domain of Mal/TIRAP

Shen, Y., Lin, Z.

(2012) PLoS One 7: e34202-e34202

Released	2012-05-16
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Toll/interleukin-1 receptor domain-containing adapter protein (protein)
Unique Ligands	DTV

Explore in 3D

4A0D \| pdb_00004a0d	Download File View File

Structure of unliganded human PARG catalytic domain

Brassington, C., Ellston, J., Hassall, G., Holdgate, G., McAlister, M., Overman, R., Smith, G., Tucker, J.A., Watson, M.

(2012) PLoS One 7: 50889

Released	2012-10-17
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	POLY(ADP-RIBOSE) GLYCOHYDROLASE (protein)
Unique Ligands	DTV, GOL, SO4

Explore in 3D

4B1G \| pdb_00004b1g	Download File View File

Structure of unliganded human PARG catalytic domain

Brassington, C., Ellston, J., Hassall, G., Holdgate, G., McAlister, M., Overman, R., Smith, G., Tucker, J.A., Watson, M.

(2012) PLoS One 7: 50889

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Homo sapiens
Macromolecule	POLY(ADP-RIBOSE) GLYCOHYDROLASE (protein)
Unique Ligands	DTV, SO4

Explore in 3D

4B1H \| pdb_00004b1h	Download File View File

Structure of human PARG catalytic domain in complex with ADP-ribose

Brassington, C., Ellston, J., Hassall, G., Holdgate, G., McAlister, M., Smith, G., Tucker, J.A., Watson, M.

(2012) PLoS One 7: 50889

Released	2012-12-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	POLY(ADP-RIBOSE) GLYCOHYDROLASE (protein)
Unique Ligands	AR6, BME, DTV, GOL, SO4

Explore in 3D

4B1I \| pdb_00004b1i	Download File View File

Structure of human PARG catalytic domain in complex with OA-ADP-HPD

Brassington, C., Ellston, J., Hassall, G., Holdgate, G., Johnson, T., McAlister, M., Smith, G., Tucker, J.A., Watson, M.

(2012) PLoS One 7: 50889

Released	2012-12-19
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Homo sapiens
Macromolecule	POLY(ADP-RIBOSE) GLYCOHYDROLASE (protein)
Unique Ligands	A8P, DTV, GOL, SO4

1 to 25 of 34 Structures

Page 1 of 2

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1NYT | pdb_00001nyt

1W19 | pdb_00001w19

1YVJ | pdb_00001yvj

2EAK | pdb_00002eak

2RAM | pdb_00002ram

2YHI | pdb_00002yhi

3AO2 | pdb_00003ao2

3F46 | pdb_00003f46

3G36 | pdb_00003g36

3H65 | pdb_00003h65

3I8R | pdb_00003i8r

3I9T | pdb_00003i9t

3IIM | pdb_00003iim

3K2G | pdb_00003k2g

3MVX | pdb_00003mvx

3NEC | pdb_00003nec

3P7X | pdb_00003p7x

3P9C | pdb_00003p9c

3R0H | pdb_00003r0h

3SBC | pdb_00003sbc

3UB4 | pdb_00003ub4

4A0D | pdb_00004a0d

4B1G | pdb_00004b1g

4B1H | pdb_00004b1h

4B1I | pdb_00004b1i