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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 16,260 Structures.

Refinements

Structure Determination Methodology

experimental (16,260)

Scientific Name of Source Organism

	Homo sapiens (6,373)
	Mus musculus (632)
	synthetic construct (620)
	Escherichia coli (206)
	Escherichia coli K-12 (204)
	Severe acute respiratory syndrome coronavirus 2 (187)
	Gallus gallus (164)
	Arabidopsis thaliana (147)
	Mycobacterium tuberculosis H37Rv (145)
	Bos taurus (133)

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Taxonomy

	Eukaryota (9,383)
	Bacteria (5,839)
	Riboviria (784)
	other sequences (620)
	Archaea (294)
	Duplodnaviria (80)
	unclassified sequences (60)
	Varidnaviria (59)
	Monodnaviria (51)
	Eukaryota (eukaryotes) (19)

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Experimental Method

	X-RAY DIFFRACTION (16,256)
	ELECTRON MICROSCOPY (4)
	NEUTRON DIFFRACTION (1)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (16,254)
	DNA (596)
	RNA (160)
	NA-hybrid (22)

Refinement Resolution (Å)

	0.5 - 1.0 (69)
	1.0 - 1.5 (2,624)
	1.5 - 2.0 (7,579)
	2.0 - 2.5 (4,412)
	2.5 - 3.0 (1,326)
	3.0 - 3.5 (230)
	3.5 - 4.0 (16)
	4.0 - 4.5 (2)
	> 4.5 (3)

Release Date

	1995 - 1999 (29)
	2000 - 2004 (284)
	2005 - 2009 (1,254)
	2010 - 2014 (3,068)
	2015 - 2019 (5,605)
	2020 - 2024 (5,818)
	2025 - 2029 (202)

Enzyme Classification Name

	Hydrolases (3,532)
	Transferases (3,554)
	Oxidoreductases (1,554)
	Lyases (729)
	Ligases (404)
	Isomerases (320)
	Translocases (41)

Membrane Protein Annotation

	PDBTM (103)
	mpstruc (81)
	MemProtMD (77)
	OPM (75)

Symmetry Type

	Asymmetric (10,460)
	Cyclic (5,030)
	Dihedral (1,135)
	Octahedral (77)
	Tetrahedral (26)
	Helical (12)
	Icosahedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (2,279)
	All beta proteins (1,837)
	Alpha and beta proteins (a+b) (2,048)
	Artifacts (1,912)
	All alpha proteins (1,292)
	Membrane and cell surface proteins and peptides (71)
	Multi-domain proteins (alpha and beta) (226)
	Small proteins (184)
	Coiled coil proteins (31)
	Designed proteins (1)

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AllSelected

1 to 25 of 16,260 Structures

Page 1 of 651

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1ATG \| pdb_00001atg	Download File View File

AZOTOBACTER VINELANDII PERIPLASMIC MOLYBDATE-BINDING PROTEIN

Lawson, D.M., Pau, R.N., Williams, C.E.M., Mitchenall, L.A.

(1998) Structure 6: 1529-1539

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Azotobacter vinelandii
Macromolecule	PERIPLASMIC MOLYBDATE-BINDING PROTEIN (protein)
Unique Ligands	ACT, EDO, SO4, WO4

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1AZO \| pdb_00001azo	Download File View File

DNA MISMATCH REPAIR PROTEIN MUTH FROM E. COLI

Yang, W.

(1998) EMBO J 17: 1526-1534

Released	1998-05-20
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli K-12
Macromolecule	MUTH (protein)
Unique Ligands	EDO

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1B63 \| pdb_00001b63	Download File View File

MUTL COMPLEXED WITH ADPNP

Yang, W.

(1999) Cell 97: 85-97

Released	1999-06-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Escherichia coli K-12
Macromolecule	MUTL (protein)
Unique Ligands	ANP, EDO, MG

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1BT0 \| pdb_00001bt0	Download File View File

STRUCTURE OF UBIQUITIN-LIKE PROTEIN, RUB1

Delacruz, W.P., Fisher, A.J.

(1998) J Biological Chem 273: 34976-34982

Released	1998-12-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Arabidopsis thaliana
Macromolecule	PROTEIN (UBIQUITIN-LIKE PROTEIN 7, RUB1) (protein)
Unique Ligands	EDO, ZN

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1BU7 \| pdb_00001bu7	Download File View File

CRYOGENIC STRUCTURE OF CYTOCHROME P450BM-3 HEME DOMAIN

Li, H., Poulos, T.L.

(1999) Proc Natl Acad Sci U S A 96: 1863-1868

Released	1998-09-23
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Priestia megaterium
Macromolecule	PROTEIN (CYTOCHROME P450) (protein)
Unique Ligands	EDO, HEM

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1BVY \| pdb_00001bvy	Download File View File

COMPLEX OF THE HEME AND FMN-BINDING DOMAINS OF THE CYTOCHROME P450(BM-3)

Sevrioukova, I.F., Li, H., Zhang, H., Peterson, J.A., Poulos, T.L.

(1999) Proc Natl Acad Sci U S A 96: 1863-1868

Released	1999-02-23
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Priestia megaterium
Macromolecule	PROTEIN (CYTOCHROME P450 BM-3) (protein)
Unique Ligands	EDO, FMN, HEM

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1BW9 \| pdb_00001bw9	Download File View File

PHENYLALANINE DEHYDROGENASE STRUCTURE IN TERNARY COMPLEX WITH NAD+ AND PHENYLPYRUVATE

Vanhooke, J.L., Thoden, J.B., Brunhuber, N.M.W., Blanchard, J.L., Holden, H.M.

(1999) Biochemistry 38: 2326-2339

Released	1999-05-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rhodococcus sp. (in: high G+C Gram-positive bacteria)
Macromolecule	PHENYLALANINE DEHYDROGENASE (protein)
Unique Ligands	EDO, IPA, K, NA, NAD, PO4, PPY

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1CKP \| pdb_00001ckp	Download File View File

HUMAN CYCLIN DEPENDENT KINASE 2 COMPLEXED WITH THE INHIBITOR PURVALANOL B

Gray, N.S., Thunnissen, A.M.W.H., Schultz, P.G., Kim, S.H.

(1998) Science 281: 533-538

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (CYCLIN-DEPENDENT PROTEIN KINASE 2) (protein)
Unique Ligands	EDO, PVB

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1D1Y \| pdb_00001d1y	Download File View File

BOVINE ENDOTHELIAL NITRIC OXIDE SYNTHASE HEME DOMAIN COMPLEXED WITH 1,3-PBITU (H4B FREE)

Raman, C.S., Li, H., Martasek, P., Southan, G.J., Masters, B.S.S., Poulos, T.L.

(2001) J Biological Chem 276: 26486-26491

Released	2001-07-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bos taurus
Macromolecule	BOVINE ENDOTHELIAL NITRIC OXIDE SYNTHASE HEME DOMAIN (protein)
Unique Ligands	3BT, ACT, CAD, EDO, GOL, HEM, ZN

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1DCI \| pdb_00001dci	Download File View File

DIENOYL-COA ISOMERASE

Modis, Y., Filppula, S.A., Novikov, D., Norledge, B., Hiltunen, J.K., Wierenga, R.K.

(1998) Structure 6: 957-970

Released	1999-03-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Rattus norvegicus
Macromolecule	DIENOYL-COA ISOMERASE (protein)
Unique Ligands	EDO, MG, SO4

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1DLY \| pdb_00001dly	Download File View File

X-RAY CRYSTAL STRUCTURE OF HEMOGLOBIN FROM THE GREEN UNICELLULAR ALGA CHLAMYDOMONAS EUGAMETOS

Pesce, A., Couture, M., Guertin, M., Dewilde, S., Moens, L., Bolognesi, M.

(2000) EMBO J 19: 2424-2434

Released	2000-09-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Chlamydomonas moewusii
Macromolecule	HEMOGLOBIN (protein)
Unique Ligands	CYN, EDO, HEM, SO4

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1DM2 \| pdb_00001dm2	Download File View File

HUMAN CYCLIN-DEPENDENT KINASE 2 COMPLEXED WITH THE INHIBITOR HYMENIALDISINE

Thunnissen, A.M., Kim, S.-H.

(2000) Chem Biol 7: 51-63

Released	2000-05-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	CYCLIN-DEPENDENT KINASE 2 (protein)
Unique Ligands	EDO, HMD

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1DP7 \| pdb_00001dp7	Download File View File

COCRYSTAL STRUCTURE OF RFX-DBD IN COMPLEX WITH ITS COGNATE X-BOX BINDING SITE

Gajiwala, K.S., Chen, H., Cornille, F., Roques, B.P., Reith, W., Mach, B., Burley, S.K.

(2000) Nature 403: 916-921

Released	2000-03-06
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	MHC CLASS II TRANSCRIPTION FACTOR HRFX1 (protein) DNA (5'-D(CPGP(BRU)PTPAPCPCPAP(BRU)PGPGPTPAPAPCPG)-3') (nucleic acid)
Unique Ligands	EDO, PEG

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1DQT \| pdb_00001dqt	Download File View File

THE CRYSTAL STRUCTURE OF MURINE CTLA4 (CD152)

Ostrov, D.A., Shi, W., Schwartz, J.C., Almo, S.C., Nathenson, S.G.

(2000) Science 290: 816-819

Released	2000-10-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	CYTOTOXIC T LYMPHOCYTE ASSOCIATED ANTIGEN 4 (protein)
Unique Ligands	CL, EDO

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1E0C \| pdb_00001e0c	Download File View File

SULFURTRANSFERASE FROM AZOTOBACTER VINELANDII

Bordo, D., Deriu, D., Colnaghi, R., Carpen, A., Pagani, S., Bolognesi, M.

(2000) J Mol Biology 298: 691

Released	2000-05-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Azotobacter vinelandii
Macromolecule	SULFURTRANSFERASE (protein)
Unique Ligands	EDO, MG, SO4

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1E3A \| pdb_00001e3a	Download File View File

A slow processing precursor penicillin acylase from Escherichia coli

Hewitt, L., Kasche, V., Lummer, K., Lewis, R.J., Murshudov, G.N., Verma, C.S., Dodson, G.G., Wilson, K.S.

(2000) J Mol Biology 302: 887

Released	2000-11-29
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	PENICILLIN AMIDASE ALPHA SUBUNIT (protein) PENICILLIN AMIDASE BETA SUBUNIT (protein)
Unique Ligands	CA, CL, EDO

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1E3U \| pdb_00001e3u	Download File View File

MAD structure of OXA10 class D beta-lactamase

Maveyraud, L., Golemi, D., Kotra, L.P., Tranier, S., Vakulenko, S., Mobashery, S., Samama, J.P.

(2000) Structure 8: 1289

Released	2001-01-12
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA-LACTAMASE OXA-10 (protein)
Unique Ligands	AUC, EDO, SO4

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1E44 \| pdb_00001e44	Download File View File

ribonuclease domain of colicin E3 in complex with its immunity protein

Carr, S., Walker, D., James, R., Kleanthous, C., Hemmings, A.M.

(2000) Structure 8: 949

Released	2001-06-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	COLICIN E3 (protein) IMMUNITY PROTEIN (protein)
Unique Ligands	EDO

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1E4D \| pdb_00001e4d	Download File View File

Structure of OXA10 beta-lactamase at pH 8.3

Maveyraud, L., Golemi, D., Kotra, L.P., Tranier, S., Vakulenko, S., Mobashery, S., Samama, J.P.

(2000) Structure 8: 1289

Released	2001-01-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	BETA-LACTAMASE OXA-10 (protein)
Unique Ligands	EDO, SO4

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1E7W \| pdb_00001e7w	Download File View File

One active site, two modes of reduction correlate the mechanism of leishmania pteridine reductase with pterin metabolism and antifolate drug resistance in trpanosomes

Gourley, D.G., Hunter, W.N.

(2001) Nat Struct Biol 8: 521

Released	2001-09-06
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Leishmania major
Macromolecule	PTERIDINE REDUCTASE (protein)
Unique Ligands	EDO, MTX, NDP

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1E92 \| pdb_00001e92	Download File View File

Pteridine reductase 1 from Leishmania major complexed with NADP+ and dihydrobiopterin

Schuettelkopf, A.W., Hunter, W.N.

(2001) Nat Struct Biol 8: 521

Released	2001-10-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Leishmania major
Macromolecule	PTERIDINE REDUCTASE 1 (protein)
Unique Ligands	EDO, HBI, NAP

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1E9V \| pdb_00001e9v	Download File View File

XENON BOUND IN HYDROPHOBIC CHANNEL OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS

Cooper, S.J., Bailey, S., Rizkallah, P.J., Lindley, P.F.

To be published

Released	2001-10-25
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Nitratidesulfovibrio vulgaris
Macromolecule	HYDROXYLAMINE REDUCTASE (protein)
Unique Ligands	ACY, EDO, FSO, GOL, SF4, TRS, XE

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1EB6 \| pdb_00001eb6	Download File View File

Deuterolysin from Aspergillus oryzae

McAuley, K.E., Jia-Xing, Y., Dodson, E.J., Lehmbeck, J., Ostergaard, P.R., Wilson, K.S.

(2001) Acta Crystallogr D Biol Crystallogr 57: 1571

Released	2001-11-23
Method	X-RAY DIFFRACTION 1 Å
Organisms	Aspergillus oryzae
Macromolecule	NEUTRAL PROTEASE II (protein)
Unique Ligands	EDO, ZN

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1EDU \| pdb_00001edu	Download File View File

CRYSTAL STRUCTURE OF THE ENTH DOMAIN OF RAT EPSIN 1

Hyman, J.H., Chen, H., Decamilli, P., Brunger, A.T.

(2000) J Cell Biol 149: 537-546

Released	2000-05-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rattus norvegicus
Macromolecule	EH domain binding protein EPSIN (protein)
Unique Ligands	EDO

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1EKJ \| pdb_00001ekj	Download File View File

THE X-RAY CRYSTALLOGRAPHIC STRUCTURE OF BETA CARBONIC ANHYDRASE FROM THE C3 DICOT PISUM SATIVUM

Kimber, M.S., Pai, E.F.

(2000) EMBO J 19: 1407-1418

Released	2000-06-07
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Pisum sativum
Macromolecule	BETA-CARBONIC ANHYDRASE (protein)
Unique Ligands	ACT, AZI, CIT, CL, CU, EDO, ZN

1 to 25 of 16,260 Structures

Page 1 of 651

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ATG | pdb_00001atg

1AZO | pdb_00001azo

1B63 | pdb_00001b63

1BT0 | pdb_00001bt0

1BU7 | pdb_00001bu7

1BVY | pdb_00001bvy

1BW9 | pdb_00001bw9

1CKP | pdb_00001ckp

1D1Y | pdb_00001d1y

1DCI | pdb_00001dci

1DLY | pdb_00001dly

1DM2 | pdb_00001dm2

1DP7 | pdb_00001dp7

1DQT | pdb_00001dqt

1E0C | pdb_00001e0c

1E3A | pdb_00001e3a

1E3U | pdb_00001e3u

1E44 | pdb_00001e44

1E4D | pdb_00001e4d

1E7W | pdb_00001e7w

1E92 | pdb_00001e92

1E9V | pdb_00001e9v

1EB6 | pdb_00001eb6

1EDU | pdb_00001edu

1EKJ | pdb_00001ekj