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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 1,060 Structures.

Refinements

Structure Determination Methodology

experimental (1,060)

Scientific Name of Source Organism

	Homo sapiens (253)
	Bos taurus (40)
	Escherichia coli (39)
	Gallus gallus (39)
	Rattus norvegicus (28)
	synthetic construct (28)
	Mycobacterium tuberculosis H37Rv (25)
	Escherichia coli K-12 (23)
	Geobacillus stearothermophilus (22)
	Mycobacterium tuberculosis (19)

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Taxonomy

	Bacteria (528)
	Eukaryota (449)
	Riboviria (48)
	other sequences (28)
	Archaea (27)
	Duplodnaviria (9)
	unclassified sequences (4)
	Varidnaviria (3)
	Monodnaviria (2)
	Viruses incertae sedis (2)

Experimental Method

	X-RAY DIFFRACTION (1,053)
	SOLUTION NMR (4)
	ELECTRON CRYSTALLOGRAPHY (2)
	ELECTRON MICROSCOPY (1)
	SOLUTION SCATTERING (1)

Polymer Entity Type

	Protein (1,060)
	DNA (15)
	RNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (158)
	1.5 - 2.0 (425)
	2.0 - 2.5 (353)
	2.5 - 3.0 (101)
	3.0 - 3.5 (14)
	3.5 - 4.0 (2)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (17)
	2000 - 2004 (47)
	2005 - 2009 (161)
	2010 - 2014 (251)
	2015 - 2019 (296)
	2020 - 2024 (279)
	2025 - 2029 (6)

Enzyme Classification Name

	Hydrolases (310)
	Oxidoreductases (143)
	Transferases (157)
	Lyases (46)
	Ligases (22)
	Isomerases (16)
	Translocases (1)

Membrane Protein Annotation

	OPM (7)
	PDBTM (8)
	MemProtMD (7)
	mpstruc (3)

Symmetry Type

	Asymmetric (658)
	Cyclic (356)
	Dihedral (74)
	Octahedral (6)

SCOP Classification

	Alpha and beta proteins (a/b) (159)
	All beta proteins (165)
	Alpha and beta proteins (a+b) (212)
	All alpha proteins (153)
	Artifacts (103)
	Multi-domain proteins (alpha and beta) (10)
	Membrane and cell surface proteins and peptides (10)
	Small proteins (5)

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1 to 25 of 1,060 Structures

Page 1 of 43

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1AES \| pdb_00001aes	Download File View File

SPECIFICITY OF LIGAND BINDING TO A BURIED POLAR CAVITY AT THE ACTIVE SITE OF CYTOCHROME C PEROXIDASE (IMIDAZOLE)

Musah, R.A., Jensen, G.M., Fitzgerald, M.M., Mcree, D.E., Goodin, D.B.

(1996) Nat Struct Biol 3: 626-631

Released	1997-09-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM, IMD

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1AKY \| pdb_00001aky	Download File View File

HIGH-RESOLUTION STRUCTURES OF ADENYLATE KINASE FROM YEAST LIGATED WITH INHIBITOR AP5A, SHOWING THE PATHWAY OF PHOSPHORYL TRANSFER

Abele, U., Schulz, G.E.

(1995) Protein Sci 4: 1262-1271

Released	1995-11-14
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	ADENYLATE KINASE (protein)
Unique Ligands	AP5, IMD

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1CCG \| pdb_00001ccg	Download File View File

CONSTRUCTION OF A BIS-AQUO HEME ENZYME AND REPLACEMENT WITH EXOGENOUS LIGAND

Mcree, D.E., Jensen, G.M., Fitzgerald, M.M., Siegel, H.A., Goodin, D.B.

(1994) Proc Natl Acad Sci U S A 91: 12847-12851

Released	1994-07-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM, IMD

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1CXA \| pdb_00001cxa	Download File View File

CRYSTALLIZATION AND X-RAY STRUCTURE DETERMINATION OF CYTOCHROME C2 FROM RHODOBACTER SPHAEROIDES IN THREE CRYSTAL FORMS

Axelrod, H.L., Feher, G., Allen, J.P., Chirino, A.J., Day, M.W., Hsu, B.T., Rees, D.C.

(1994) Acta Crystallogr D Biol Crystallogr 50: 596-602

Released	1995-07-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Cereibacter sphaeroides
Macromolecule	CYTOCHROME C2 (protein)
Unique Ligands	HEC, IMD

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1DP9 \| pdb_00001dp9	Download File View File

CRYSTAL STRUCTURE OF IMIDAZOLE-BOUND FIXL HEME DOMAIN

Gong, W., Hao, B., Chan, M.K.

(2000) Biochemistry 39: 3955-3962

Released	2000-12-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bradyrhizobium japonicum
Macromolecule	FIXL PROTEIN (protein)
Unique Ligands	HEM, IMD

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1DS4 \| pdb_00001ds4	Download File View File

CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX, PH 6, 100K

Hirst, J., Wilcox, S.K., Williams, P.A., McRee, D.E., Goodin, D.B.

(2001) Biochemistry 40: 1265-1273

Released	2001-03-07
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM, IMD

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1DSE \| pdb_00001dse	Download File View File

CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX, WITH PHOSPHATE BOUND, PH 6, 100K

Hirst, J., Wilcox, S.K., Williams, P.A., McRee, D.E., Goodin, D.B.

(2001) Biochemistry 40: 1265-1273

Released	2001-03-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM, IMD, PO4

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1DSG \| pdb_00001dsg	Download File View File

CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX AT PH 5, ROOM TEMPERATURE.

Hirst, J., Wilcox, S.K., Williams, P.A., McRee, D.E., Goodin, D.B.

(2001) Biochemistry 40: 1265-1273

Released	2001-03-07
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM, IMD

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1DSO \| pdb_00001dso	Download File View File

CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX AT PH 6, ROOM TEMPERATURE.

Hirst, J., Wilcox, S.K., Williams, P.A., McRee, D.E., Goodin, D.B.

(2001) Biochemistry 40: 1265-1273

Released	2001-03-07
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM, IMD

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1DSP \| pdb_00001dsp	Download File View File

CYTOCHROME C PEROXIDASE H175G MUTANT, IMIDAZOLE COMPLEX AT PH 7, ROOM TEMPERATURE.

Hirst, J., Wilcox, S.K., Williams, P.A., McRee, D.E., Goodin, D.B.

(2001) Biochemistry 40: 1265-1273

Released	2001-03-07
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM, IMD

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1F4U \| pdb_00001f4u	Download File View File

THERMOPHILIC P450: CYP119 FROM SULFOLOBUS SOLFACTARICUS

Yano, J.K., Koo, L.S., Schuller, D.J., Li, H., Ortiz de Montellano, P.R., Poulos, T.L.

(2000) J Biological Chem 275: 31086-31092

Released	2000-10-23
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Saccharolobus solfataricus
Macromolecule	CYTOCHROME P450 119 (protein)
Unique Ligands	HEM, IMD, SO4

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1FI7 \| pdb_00001fi7	Download File View File

Solution structure of the imidazole complex of cytochrome C

Banci, L., Bertini, I., Liu, G., Lu, J., Reddig, T., Tang, W., Wu, Y., Zhu, D.

(2001) J Biol Inorg Chem 6: 628-637

Released	2000-08-23
Method	SOLUTION NMR
Organisms	Equus caballus
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, IMD

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1FI9 \| pdb_00001fi9	Download File View File

SOLUTION STRUCTURE OF THE IMIDAZOLE COMPLEX OF CYTOCHROME C

Banci, L., Bertini, I., Liu, G., Lu, J., Reddig, T., Tang, W., Wu, Y., Zhu, D.

(2001) J Biol Inorg Chem 6: 628-637

Released	2000-08-23
Method	SOLUTION NMR
Organisms	Equus caballus
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, IMD

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1GW6 \| pdb_00001gw6	Download File View File

STRUCTURE OF LEUKOTRIENE A4 HYDROLASE D375N MUTANT

Rudberg, P.C., Tholander, F., Thunnissen, M.M.G.M., Samuelsson, B., Haeggstrom, J.Z.

(2002) Proc Natl Acad Sci U S A 99: 4215

Released	2003-03-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	LEUKOTRIENE A-4 HYDROLASE (protein)
Unique Ligands	ACT, BES, IMD, YB, ZN

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1GZ5 \| pdb_00001gz5	Download File View File

Trehalose-6-phosphate synthase. OtsA

Gibson, R.P., Turkenburg, J.P., Davies, G.J.

(2002) Chem Biol 9: 1337

Released	2003-02-07
Method	X-RAY DIFFRACTION 2.43 Å
Organisms	Escherichia coli str. K-12 substr. W3110
Macromolecule	ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (protein)
Unique Ligands	G6P, IMD, UDP

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1H19 \| pdb_00001h19	Download File View File

STRUCTURE OF [E271Q]LEUKOTRIENE A4 HYDROLASE

Rudberg, P.C., Tholander, F., Thunnissen, M.M.G.M., Haeggstrom, J.Z.

(2002) J Biological Chem 277: 1398

Released	2002-08-08
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	LEUKOTRIENE A-4 HYDROLASE (protein)
Unique Ligands	ACY, IMD, YB, ZN

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1HEZ \| pdb_00001hez	Download File View File

Structure of P. magnus protein L bound to a human IgM Fab.

Graille, M., Stura, E.A., Housden, N.G., Bottomley, S.P., Taussig, M.J., Sutton, B.J., Gore, M.G., Charbonnier, J.B.

(2001) Structure 9: 679

Released	2001-08-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Finegoldia magna Homo sapiens
Macromolecule	HEAVY CHAIN OF IG (protein) KAPPA LIGHT CHAIN OF IG (protein) PROTEIN L (protein)
Unique Ligands	IMD

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1HS6 \| pdb_00001hs6	Download File View File

STRUCTURE OF LEUKOTRIENE A4 HYDROLASE COMPLEXED WITH BESTATIN.

Thunnissen, M.M.G.M., Nordlund, P.N., Haeggstrom, J.Z.

(2001) Nat Struct Biol 8: 131-135

Released	2001-06-24
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	LEUKOTRIENE A-4 HYDROLASE (protein)
Unique Ligands	ACT, BES, IMD, YB, ZN

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1HX3 \| pdb_00001hx3	Download File View File

CRYSTAL STRUCTURE OF E.COLI ISOPENTENYL DIPHOSPHATE:DIMETHYLALLYL DIPHOSPHATE ISOMERASE

Durbecq, V., Sainz, G., Oudjama, Y., Clantin, B., Bompard-Gilles, C., Tricot, C., Caillet, J., Stalon, V., Droogmans, L., Villeret, V.

(2001) EMBO J 20: 1530-1537

Released	2001-07-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli
Macromolecule	ISOPENTENYL DIPHOSPHATE DELTA-ISOMERASE (protein)
Unique Ligands	IMD, MN, SO4

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1I12 \| pdb_00001i12	Download File View File

CRYSTAL STRUCTURE OF SACCHAROMYCES CEREVISIAE GNA1 COMPLEXED WITH ACCOA

Peneff, C., Mengin-Lecreulx, D., Bourne, Y.

(2001) J Biological Chem 276: 16328-16334

Released	2001-05-16
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	GLUCOSAMINE-PHOSPHATE N-ACETYLTRANSFERASE (protein)
Unique Ligands	ACO, IMD

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1I1D \| pdb_00001i1d	Download File View File

CRYSTAL STRUCTURE OF YEAST GNA1 BOUND TO COA AND GLNAC-6P

Peneff, C., Mengin-Lecreulx, D., Bourne, Y.

(2001) J Biological Chem 276: 16328-16334

Released	2001-05-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	GLUCOSAMINE-PHOSPHATE N-ACETYLTRANSFERASE (protein)
Unique Ligands	16G, COA, IMD