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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 165 Structures.

Refinements

Structure Determination Methodology

experimental (165)

Scientific Name of Source Organism

	Homo sapiens (56)
	Escherichia coli (21)
	Escherichia coli K-12 (19)
	Saccharomyces cerevisiae S288C (14)
	Kluyveromyces lactis (13)
	Kluyveromyces lactis NRRL Y-1140 (13)
	Thermus thermophilus HB8 (10)
	Saccharomyces cerevisiae (8)
	Escherichia phage T4 (7)
	Mycolicibacterium smegmatis MC2 155 (6)

More...

Taxonomy

	Eukaryota (88)
	Bacteria (68)
	Archaea (15)
	Duplodnaviria (7)
	other sequences (4)
	Eukaryota (eukaryotes) (2)
	unclassified bacterial viruses (2)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (88)
	ELECTRON MICROSCOPY (75)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (165)
	RNA (80)
	DNA (2)
	NA-hybrid (1)

Refinement Resolution (Å)

	1.0 - 1.5 (12)
	1.5 - 2.0 (25)
	2.0 - 2.5 (27)
	2.5 - 3.0 (25)
	3.0 - 3.5 (28)
	3.5 - 4.0 (25)
	4.0 - 4.5 (12)
	> 4.5 (9)

Release Date

	1990 - 1994 (2)
	1995 - 1999 (4)
	2000 - 2004 (4)
	2005 - 2009 (9)
	2010 - 2014 (25)
	2015 - 2019 (57)
	2020 - 2024 (58)
	2025 - 2029 (6)

Enzyme Classification Name

	Hydrolases (101)
	Transferases (11)
	Lyases (8)
	Ligases (2)
	Isomerases (1)

Symmetry Type

	Asymmetric (145)
	Cyclic (26)

SCOP Classification

	Alpha and beta proteins (a/b) (49)
	All beta proteins (8)
	Artifacts (9)
	All alpha proteins (5)
	Alpha and beta proteins (a+b) (1)
	Small proteins (1)

AllSelected

1 to 25 of 165 Structures

Page 1 of 7

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121P \| pdb_0000121p	Download File View File

STRUKTUR UND GUANOSINTRIPHOSPHAT-HYDROLYSEMECHANISMUS DES C-TERMINAL VERKUERZTEN MENSCHLICHEN KREBSPROTEINS P21-H-RAS

Krengel, U., Scheffzek, K., Scherer, A., Kabsch, W., Wittinghofer, A., Pai, E.F.

(1991) Thesis

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens
Macromolecule	H-RAS P21 PROTEIN (protein)
Unique Ligands	GCP, MG

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1CEE \| pdb_00001cee	Download File View File

SOLUTION STRUCTURE OF CDC42 IN COMPLEX WITH THE GTPASE BINDING DOMAIN OF WASP

Abdul-Manan, N., Aghazadeh, B., Liu, G.A., Majumdar, A., Ouerfelli, O., Rosen, M.K.

(1999) Nature 399: 379-383

Released	1999-06-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	GTP-BINDING RHO-LIKE PROTEIN (protein) WISKOTT-ALDRICH SYNDROME PROTEIN WASP (protein)
Unique Ligands	GCP, MG

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1HOP \| pdb_00001hop	Download File View File

STRUCTURE OF GUANINE NUCLEOTIDE (GPPCP) COMPLEX OF ADENYLOSUCCINATE SYNTHETASE FROM ESCHERICHIA COLI AT PH 6.5 AND 25 DEGREES CELSIUS

Poland, B.W., Hou, Z., Bruns, C., Fromm, H.J., Honzatko, R.B.

(1996) J Biological Chem 271: 15407-15413

Released	1996-11-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli
Macromolecule	ADENYLOSUCCINATE SYNTHETASE (protein)
Unique Ligands	GCP

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1JAH \| pdb_00001jah	Download File View File

H-RAS P21 PROTEIN MUTANT G12P, COMPLEXED WITH GUANOSINE-5'-[BETA,GAMMA-METHYLENE] TRIPHOSPHATE AND MAGNESIUM

Schweins, T., Scheffzek, K., Assheuer, R., Wittinghofer, A.

(1997) J Mol Biology 266: 847-856

Released	1997-07-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	C-HA-RAS (protein)
Unique Ligands	GCP, MG

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1JAI \| pdb_00001jai	Download File View File

H-RAS P21 PROTEIN MUTANT G12P, COMPLEXED WITH GUANOSINE-5'-[BETA,GAMMA-METHYLENE] TRIPHOSPHATE AND MANGANESE

Schweins, T., Scheffzek, K., Assheuer, R., Wittinghofer, A.

(1997) J Mol Biology 266: 847-856

Released	1997-07-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	C-HA-RAS (protein)
Unique Ligands	GCP, MN

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1KHB \| pdb_00001khb	Download File View File

PEPCK complex with nonhydrolyzable GTP analog, native data

Dunten, P., Belunis, C., Crowther, R., Hollfelder, K., Kammlott, U., Levin, W., Michel, H., Ramsey, G.B., Swain, A., Weber, D., Wertheimer, S.J.

(2002) J Mol Biology 316: 257-264

Released	2002-02-27
Method	X-RAY DIFFRACTION 1.854 Å
Organisms	Homo sapiens
Macromolecule	Phosphoenolpyruvate carboxykinase, cytosolic (GTP) (protein)
Unique Ligands	ACT, EDO, GCP, MN

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1KHE \| pdb_00001khe	Download File View File

PEPCK complex with nonhydrolyzable GTP analog, MAD data

Dunten, P., Belunis, C., Crowther, R., Hollfelder, K., Kammlott, U., Levin, W., Michel, H., Ramsey, G.B., Swain, A., Weber, D., Wertheimer, S.J.

(2002) J Mol Biology 316: 257-264

Released	2002-02-27
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Phosphoenolpyruvate Carboxykinase, cytosolic (GTP) (protein)
Unique Ligands	GCP, MN

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1OKK \| pdb_00001okk	Download File View File

HOMO-HETERODIMERIC COMPLEX OF THE SRP GTPASES

Focia, P.J., Freymann, D.M.

(2004) Science 303: 373

Released	2004-01-19
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Thermus aquaticus
Macromolecule	CELL DIVISION PROTEIN FTSY (protein) SIGNAL RECOGNITION PARTICLE PROTEIN (protein)
Unique Ligands	BZP, EDO, GCP, MG, SO4

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1RJ9 \| pdb_00001rj9	Download File View File

Structure of the heterodimer of the conserved GTPase domains of the Signal Recognition Particle (Ffh) and Its Receptor (FtsY)

Egea, P.F., Shan, S.O., Napetschnig, J., Savage, D.F., Walter, P., Stroud, R.M.

(2004) Nature 427: 215-221

Released	2004-01-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Thermus aquaticus
Macromolecule	Signal Recognition Protein (protein) Signal recognition particle protein (protein)
Unique Ligands	GCP, MG

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2C04 \| pdb_00002c04	Download File View File

GMPPCP complex of SRP GTPase Ffh NG Domain at ultra-high resolution

Ramirez, U.D., Preininger, A.M., Freymann, D.M.

(2008) Acta Crystallogr D Biol Crystallogr 64: 1043

Released	2007-02-13
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Thermus aquaticus
Macromolecule	SIGNAL RECOGNITION PARTICLE PROTEIN (protein)
Unique Ligands	CA, GCP

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2J7K \| pdb_00002j7k	Download File View File

Crystal structure of the T84A mutant EF-G:GDPCP complex

Hansson, S., Logan, D.T.

To be published

Released	2007-10-23
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Thermus thermophilus HB8
Macromolecule	ELONGATION FACTOR G (protein)
Unique Ligands	GCP, MG

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2ODB \| pdb_00002odb	Download File View File

The crystal structure of human cdc42 in complex with the CRIB domain of human p21-activated kinase 6 (PAK6)

Ugochukwu, E., Yang, X., Elkins, J., Soundararajan, M., Pike, A.C.W., Eswaran, J., Burgess, N., Debreczeni, J.E., Sundstrom, M., Arrowsmith, C., Weigelt, J., Edwards, A., Gileadi, O., von Delft, F., Knapp, S., Doyle, D., Structural Genomics Consortium (SGC)

To be published

Released	2007-01-30
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Human Cell Division Cycle 42 (CDC42) (protein) Serine/threonine-protein kinase PAK 6 (protein)
Unique Ligands	CL, GCP, MG, SO4

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2OV2 \| pdb_00002ov2	Download File View File

The crystal structure of the human RAC3 in complex with the CRIB domain of human p21-activated kinase 4 (PAK4)

Ugochukwu, E., Yang, X., Elkins, J.M., Burgess-Brown, N., Bunkoczi, G., Debreczeni, J.E.D., Sundstrom, M., Arrowsmith, C.H., Weigelt, J., Edwards, A., von Delft, F., Knapp, S., Doyle, D.A., Structural Genomics Consortium (SGC)

To be published

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Ras-related C3 botulinum toxin substrate 3 (protein) Serine/threonine-protein kinase PAK 4 (protein)
Unique Ligands	CL, EDO, GCP, MG

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2QME \| pdb_00002qme	Download File View File

Crystal structure of human RAC3 in complex with CRIB domain of human p21-activated kinase 1 (PAK1)

Ugochukwu, E., Yang, X., Elkins, J.M., Burgess-Brown, N., Bunkoczi, G., Sundstrom, M., Arrowsmith, C.H., Weigelt, J., Edwards, A., von Delft, F., Knapp, S., Doyle, D., Structural Genomics Consortium (SGC)

To be published

Released	2007-08-28
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	CRIB domain of the Serine/threonine-protein kinase PAK 1 (protein) Ras-related C3 botulinum toxin substrate 3 (protein)
Unique Ligands	GCP, GOL, MG

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2QRZ \| pdb_00002qrz	Download File View File

Cdc42 bound to GMP-PCP: Induced Fit by Effector is Required

Phillips, M.J., Calero, G., Chan, B., Cerione, R.A.

(2008) J Biological Chem 283: 14153-14164

Released	2008-03-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Cell division control protein 42 homolog precursor (protein)
Unique Ligands	GCP, MG, SO4

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2RMK \| pdb_00002rmk	Download File View File

Rac1/PRK1 Complex

Modha, R., Campbell, L.J., Nietlispach, D., Buhecha, H.R., Owen, D., Mott, H.R.

(2008) J Biological Chem 283: 1492-1500

Released	2007-11-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Ras-related C3 botulinum toxin substrate 1 (protein) Serine/threonine-protein kinase N1 (protein)
Unique Ligands	GCP, MG

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2XXA \| pdb_00002xxa	Download File View File

The Crystal Structure of the Signal Recognition Particle (SRP) in Complex with its Receptor(SR)

Ataide, S.F., Schmitz, N., Shen, K., Ke, A., Shan, S., Doudna, J.A., Ban, N.

(2011) Science 331: 881

Released	2011-03-02
Method	X-RAY DIFFRACTION 3.94 Å
Organisms	Deinococcus radiodurans Escherichia coli K-12
Macromolecule	SIGNAL RECOGNITION PARTICLE PROTEIN (protein) SRP RECEPTOR FTSY (protein) 4.5S RNA (nucleic acid)
Unique Ligands	GCP, MG

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3AF3 \| pdb_00003af3	Download File View File

Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with GMPPCP and Pantothenate

Chetnani, B., Kumar, P., Surolia, A., Vijayan, M.

(2010) J Mol Biology 400: 171-185

Released	2010-05-26
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Pantothenate kinase (protein)
Unique Ligands	GCP, GOL, PAU

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3AF4 \| pdb_00003af4	Download File View File

Pantothenate kinase from Mycobacterium tuberculosis (MtPanK) in complex with GMPPCP

Chetnani, B., Kumar, P., Surolia, A., Vijayan, M.

(2010) J Mol Biology 400: 171-185

Released	2010-05-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Pantothenate kinase (protein)
Unique Ligands	GCP, GOL

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3GEI \| pdb_00003gei	Download File View File

Crystal structure of MnmE from Chlorobium tepidum in complex with GCP

Meyer, S., Wittinghofer, A.

(2009) PLoS Biol 7: e1000212-e1000212

Released	2009-10-27
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Chlorobaculum tepidum
Macromolecule	tRNA modification GTPase mnmE (protein)
Unique Ligands	GCP, MG

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3I1F \| pdb_00003i1f	Download File View File

Gamma-subunit of the translation initiation factor 2 from S. solfataricus in complex with Gpp(CH2)p

Stolboushkina, E.A., Nikonov, S.V., Nikulin, A.D., Blaesi, U., Garber, M.B., Nikonov, O.S.

To be published

Released	2010-06-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharolobus solfataricus
Macromolecule	Translation initiation factor 2 subunit gamma (protein)
Unique Ligands	GCP, PO4

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3I92 \| pdb_00003i92	Download File View File

Structure of the cytosolic domain of E. coli FeoB, GppCH2p-bound form

Petermann, N., Hansen, G., Hogg, T., Hilgenfeld, R.

To be published

Released	2009-07-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia coli
Macromolecule	Ferrous iron transport protein B (protein)
Unique Ligands	GCP, MG

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3J25 \| pdb_00003j25	Download File View File

Structural basis for TetM-mediated tetracycline resistance

Doenhoefer, A., Franckenberg, S., Wickles, S., Berninghausen, O., Beckmann, R., Wilson, D.N.

(2012) Proc Natl Acad Sci U S A 109: 16900-16905

Released	2012-10-17
Method	ELECTRON MICROSCOPY 7.2 Å
Organisms	Enterococcus faecalis
Macromolecule	Tetracycline resistance protein tetM (protein)
Unique Ligands	GCP

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3JAP \| pdb_00003jap	Download File View File

Structure of a partial yeast 48S preinitiation complex in closed conformation

Llacer, J.L., Hussain, T., Ramakrishnan, V.

(2015) Mol Cell 59: 399-412

Released	2015-08-12
Method	ELECTRON MICROSCOPY 4.9 Å
Organisms	Kluyveromyces lactis Saccharomyces cerevisiae synthetic construct
Macromolecule	Unique protein chains: 44 Unique nucleic acid chains: 3
Unique Ligands	GCP, MET, MG, ZN