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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chemical ID(s) = PHI

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Search Summary

This query matches 57 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (57)

Scientific Name of Source Organism

	synthetic construct (29)
	Homo sapiens (12)
	Tequatrovirus T4 (3)
	Halorhodospira halophila (2)
	Solanum tuberosum (2)
	Saccharomyces cerevisiae (1)

Taxonomy

	other sequences (29)
	Eukaryota (15)
	Duplodnaviria (3)
	Bacteria (2)

Experimental Method

	X-RAY DIFFRACTION (51)
	ELECTRON MICROSCOPY (6)

Polymer Entity Type

Protein (57)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (6)
	1.5 - 2.0 (17)
	2.0 - 2.5 (23)
	2.5 - 3.0 (3)
	3.5 - 4.0 (5)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (4)
	2010 - 2014 (12)
	2015 - 2019 (27)
	2020 - 2024 (13)

Enzyme Classification Name

	Hydrolases (3)
	Transferases (2)

Symmetry Type

	Asymmetric (21)
	Cyclic (20)
	Dihedral (18)
	Tetrahedral (5)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a+b) (5)
	Alpha and beta proteins (a/b) (2)
	Artifacts (2)

AllSelected

1 to 25 of 57 Polymer Entities

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1CZI: Entity 2	Download File View File

CHYMOSIN COMPLEX WITH THE INHIBITOR CP-113972

Groves, M.R., Dhanaraj, V., Pitts, J.E., Badasso, M., Hoover, D., Nugent, P., Blundell, T.L.

(1998) Protein Eng 11: 833-840

Released	1997-04-01
Method	X-RAY DIFFRACTION 2.3 Å
Chain ID	B [auth P]
Macromolecule	CP-113972 (NORSTATINE-S-METHYL CYSTEINE-IODO-PHENYLALANINE-PROLINE)

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1GA1: Entity 2	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF PSCP (PSEUDOMONAS SERINE-CARBOXYL PROTEINASE) COMPLEXED WITH A FRAGMENT OF IODOTYROSTATIN (THIS ENZYME RENAMED "SEDOLISIN" IN 2003)

Dauter, Z., Li, M., Wlodawer, A.

(2001) Acta Crystallogr D Biol Crystallogr 57: 239-249

Released	2000-12-13
Method	X-RAY DIFFRACTION 1.4 Å
Chain ID	B [auth I]
Macromolecule	FRAGMENT OF IODOTYROSTATIN

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1GA4: Entity 2	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF PSCP (PSEUDOMONAS SERINE-CARBOXYL PROTEINASE) COMPLEXED WITH INHIBITOR PSEUDOIODOTYROSTATIN (THIS ENZYME RENAMED "SEDOLISIN" IN 2003)

Wlodawer, A., Li, M., Dauter, Z., Gustchina, A., Uchida, K.

(2001) Nat Struct Biol 8: 442-446

Released	2000-12-13
Method	X-RAY DIFFRACTION 1.4 Å
Chain ID	B [auth I]
Macromolecule	PSEUDOIODOTYROSTATIN

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1NLU: Entity 2	Download File View File

Pseudomonas sedolisin (serine-carboxyl proteinase) complexed with two molecules of pseudo-iodotyrostatin

Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Glodfarb, N.E., Dunn, B.M., Oda, K.

(2004) Biochem Biophys Res Commun 314: 638-645

Released	2004-01-20
Method	X-RAY DIFFRACTION 1.3 Å
Chain IDs	B, C
Macromolecule	PSEUDO-IODOTYROSTATIN

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1T6H: Entity 1	Download File View File

Crystal Structure T4 Lysozyme incorporating an unnatural amino acid p-iodo-L-phenylalanine at position 153

Spraggon, G., Xie, J., Wang, L., Wu, N., Brock, A., Schultz, P.G.

(2004) Nat Biotechnol 22: 1297-1301

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.01 Å
Chain ID	A
Organism	Tequatrovirus T4
Macromolecule	Lysozyme

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3R3K: Entity 1	Download File View File

Crystal structure of a parallel 6-helix coiled coil

Zaccai, N.R., Chi, B.H.C., Woolfson, D.N., Brady, R.L.

(2011) Nat Chem Biol 7: 935-941

Released	2011-11-16
Method	X-RAY DIFFRACTION 2.2009 Å
Chain IDs	A, B, C
Macromolecule	CChex-Phi22 helix

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3R4H: Entity 1	Download File View File

Crystal structure of the 4-helix coiled coil CC-Tet-phi22

Zaccai, N.R., Chi, B.H.C., Woolfson, D.N., Brady, R.L.

(2011) Nat Chem Biol 7: 935-941

Released	2011-11-16
Method	X-RAY DIFFRACTION 2.7003 Å
Chain IDs	A, B, C, D, E
Organism	synthetic construct
Macromolecule	coiled coil helix CC-Tet-phi22

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3RA3: Entity 1	Download File View File

Crystal structure of a section of a de novo design gigaDalton protein fibre

Zaccai, N.R., Sharp, T.H., Bruning, M., Woolfson, D.N., Brady, R.L.

(2012) Proc Natl Acad Sci U S A 109: 13266-13271

Released	2012-08-08
Method	X-RAY DIFFRACTION 2.31 Å
Chain IDs	A, D [auth E]
Macromolecule	p1c

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4DZL: Entity 1	Download File View File

A de novo designed Coiled Coil CC-Tri

Bruning, M., Thomson, A.R., Zaccai, N.R., Brady, R.L., Woolfson, D.N.

(2012) ACS Synth Biol 1: 240-250

Released	2012-08-29
Method	X-RAY DIFFRACTION 2.3 Å
Chain IDs	A, B [auth I], C, D [auth B], E More (12)
Organism	synthetic construct
Macromolecule	COILED-COIL PEPTIDE CC-TRI

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4DZM: Entity 1	Download File View File

A de novo designed Coiled Coil CC-Di

Bruning, M., Thomson, A.R., Zaccai, N.R., Brady, R.L., Woolfson, D.N.

(2012) ACS Synth Biol 1: 240-250

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.94 Å
Chain IDs	A, B
Organism	synthetic construct
Macromolecule	COILED-COIL PEPTIDE CC-DI

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4DZN: Entity 1	Download File View File

A de novo designed Coiled Coil CC-pIL

Bruning, M., Thomson, A.R., Zaccai, N.R., Brady, R.L., Woolfson, D.N.

(2012) ACS Synth Biol 1: 240-250

Released	2012-08-29
Method	X-RAY DIFFRACTION 1.59 Å
Chain IDs	A, B, C
Organism	synthetic construct
Macromolecule	COILED-COIL PEPTIDE CC-PIL

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4H8F: Entity 1	Download File View File

Crystal structure of a parallel 4-helix coiled coil CC-Hex-II- 22

Chi, B., Zaccai, N.R., Brady, R.L., Woolfson, D.N.

J Am Chem Soc

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.88 Å
Chain IDs	A, B
Organism	synthetic construct
Macromolecule	CC-Hex-II-Phi22

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4H8G: Entity 1	Download File View File

crystal structure of a parallel 6-helix coiled coil CC-Hex-IL- 22

Chi, B., Zaccai, N.R., Brady, R.L., Woolfson, D.N.

J Am Chem Soc

Released	2014-02-05
Method	X-RAY DIFFRACTION 1.699 Å
Chain IDs	A, B, C, D, E More (12)
Organism	synthetic construct
Macromolecule	CC-Hex-IL-22

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4JIJ: Entity 1	Download File View File

Crystal structure of an inactive mutant of MMP-9 catalytic domain in complex with a fluorogenic synthetic peptidic substrate

Stura, E.A., Vera, L., Cassar-Lajeunesse, E., Tranchant, I., Amoura, M., Dive, V.

(2014) Chem Biol 21: 408-413

Released	2014-03-12
Method	X-RAY DIFFRACTION 1.698 Å
Chain IDs	A [auth P], C [auth Q]
Macromolecule	fluorogenic peptidic substrate (8MC)PLG(PHI)(DNW)AR(NH2)

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4NTP: Entity 1	Download File View File

Crystal structure of macrocycles containing A 17-23 (LV(PHI)FAED) and A 30-36 (AII(SAR)L(ORN)V)

Nowick, J.S., Spencer, R.K., Li, H.

(2014) J Am Chem Soc 136: 5595-5598

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.987 Å
Chain IDs	A, B, C, D, E More (16)
Organism	synthetic construct
Macromolecule	Cyclic hexadecapeptide (ORN)LV(PHI)FAED(ORN)AII(SAR)L(ORN)V

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4NW8: Entity 1	Download File View File

Crystal structure of macrocycles containing Abeta17-23 (LV(PHI)(MEA)AED) and Abeta30-36 (AIIGL(ORN)V)

Spencer, R.K., Li, H., Nowick, J.S.

(2014) J Am Chem Soc 136: 5595-5598

Released	2014-04-02
Method	X-RAY DIFFRACTION 2.02 Å
Chain IDs	L, A, B, C, D More (12)
Organism	synthetic construct
Macromolecule	Cyclic hexadecapeptide (ORN)LV(PHI)(MEA)AED(ORN)AIIGL(ORN)V

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4P4V: Entity 1	Download File View File

Hexamer formed by a macrocyclic peptide derived from beta-2-microglobulin (63-69) - (ORN)YLL(PHI)YTE(ORN)KVA(MAA)AVK

Spencer, R.K., Nowick, J.S.

(2015) J Am Chem Soc 137: 6304-6311

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.97 Å
Chain IDs	A, B, C
Organism	synthetic construct
Macromolecule	CYCLIC HEXADECAPEPTIDE (ORN)YLL(PHI)YTE(ORN)KVA(MAA)AVK

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4P4W: Entity 1	Download File View File

Dodecamer formed by a macrocyclic peptide derived from beta-2-microglobulin (63-69) - (ORN)YLL(PHI)YTE(ORN)KVA(MVA)AVK

Spencer, R.K., Kreutzer, A., Nowick, J.S.

(2015) J Am Chem Soc 137: 6304-6311

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.498 Å
Chain IDs	A, B, C, D, E More (12)
Organism	synthetic construct
Macromolecule	CYCLIC HEXADECAPEPTIDE (ORN)YLL(PHI)YTE(ORN)KVA(MVA)AVK

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4P4X: Entity 1	Download File View File

Dodecamer formed by a macrocyclic peptide derived from beta-2-microglobulin (63-69) - (ORN)YLL(PHI)YTE(ORN)KVA(MLE)AVK

Spencer, R.K., Nowick, J.S.

(2015) J Am Chem Soc 137: 6304-6311

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.898 Å
Chain IDs	A, C, D, E, F More (12)
Organism	synthetic construct
Macromolecule	CYCLIC HEXADECAPEPTIDE (ORN)YLL(PH7)YTE(ORN)KVA(MLE)AVK

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4P4Y: Entity 1	Download File View File

Hexamer formed by a macrocyclic peptide derived from beta-2-microglobulin (63-69) - (ORN)YLL(PHI)YTE(ORN)KVT(MAA)TVK

Spencer, R.K., Li, H., Nowick, J.S.

(2015) J Am Chem Soc 137: 6304-6311

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.509 Å
Chain IDs	A, B, C, D, E
Organism	synthetic construct
Macromolecule	CYCLIC HEXADECAPEPTIDE (ORN)YLL(PHI)YTE(ORN)KVT(MAA)TVK

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4P4Z: Entity 1	Download File View File

Octomer formed by a macrocyclic peptide derived from beta-2-microglobulin (63-69) - (ORN)YLL(PHI)YTE(ORN)KVT(MVA)TVK

Spencer, R.K., Nowick, J.S.

(2015) J Am Chem Soc 137: 6304-6311

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.31 Å
Chain IDs	A, B, C, D, E More (12)
Organism	synthetic construct
Macromolecule	CYCLIC HEXADECAPEPTIDE (ORN)YLL(PHI)YTE(ORN)KVT(MVA)TVK

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4Q8D: Entity 1	Download File View File

Crystal structure of a macrocyclic beta-sheet peptide containing two beta-strands from amyloid beta residues 15-23

Pham, J.D., Spencer, R.K., Chen, K.H., Nowick, J.S.

(2014) J Am Chem Soc 136: 12682-12690

Released	2014-08-13
Method	X-RAY DIFFRACTION 1.746 Å
Chain IDs	A, B
Macromolecule	macrocyclic beta-sheet peptide incorporating residues amyloid beta 15-23

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4WC8: Entity 1	Download File View File

Heterogeneous dodecamer formed from macrocycles containing a sequence from beta-2-microglobulin(63-69).

Spencer, R.K., Nowick, J.S.

(2015) J Am Chem Soc 137: 6304-6311

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.908 Å
Chain IDs	A, E, I, J, K
Organism	synthetic construct
Macromolecule	ORN-TYR-LEU-LEU-PHI-TYR-THR-GLU-ORN-LYS-VAL-ALA-MAA-ALA-VAL-LYS

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4WC8: Entity 2	Download File View File

Heterogeneous dodecamer formed from macrocycles containing a sequence from beta-2-microglobulin(63-69).

Spencer, R.K., Nowick, J.S.

(2015) J Am Chem Soc 137: 6304-6311

Released	2015-05-06
Method	X-RAY DIFFRACTION 1.908 Å
Chain IDs	B, C, D, F, G
Organism	synthetic construct
Macromolecule	ORN-TYR-LEU-LEU-PHI-TYR-THR-GLU-ORN-LYS-VAL-ALA-MLE-ALA-VAL-LYS

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4X0S: Entity 1	Download File View File

Hexamer formed by a macrocycle containing a sequence from beta-2-microglobulin (63-69).

Spencer, R.K., Salveson, P.J., Nowick, J.S.

(2015) J Am Chem Soc 137: 6304-6311

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.032 Å
Chain ID	A
Organism	synthetic construct
Macromolecule	ORN-TYR-LEU-LEU-PHI-TYR-VAL-GLU-ORN-LYS-VAL-ALA-MAA-ALA-VAL-LYS