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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 2,249 Structures.

Refinements

Structure Determination Methodology

experimental (2,249)

Scientific Name of Source Organism

	Homo sapiens (588)
	Chikungunya virus (117)
	Escherichia coli (56)
	Escherichia coli K-12 (51)
	synthetic construct (48)
	Mus musculus (46)
	Mycobacterium tuberculosis (30)
	Tequatrovirus T4 (29)
	Enterobacteria phage HK620 (28)
	Arabidopsis thaliana (26)

More...

Taxonomy

	Bacteria (999)
	Eukaryota (964)
	Riboviria (162)
	Duplodnaviria (71)
	Archaea (63)
	other sequences (48)
	Varidnaviria (5)
	unclassified sequences (4)
	Eukaryota (eukaryotes) (2)

Experimental Method

	X-RAY DIFFRACTION (2,244)
	ELECTRON MICROSCOPY (5)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

	Protein (2,248)
	DNA (36)
	RNA (19)

Refinement Resolution (Å)

	0.5 - 1.0 (11)
	1.0 - 1.5 (411)
	1.5 - 2.0 (1,032)
	2.0 - 2.5 (568)
	2.5 - 3.0 (167)
	3.0 - 3.5 (47)
	3.5 - 4.0 (13)
	> 4.5 (1)

Release Date

	1990 - 1994 (3)
	1995 - 1999 (9)
	2000 - 2004 (157)
	2005 - 2009 (228)
	2010 - 2014 (393)
	2015 - 2019 (625)
	2020 - 2024 (812)
	2025 - 2029 (22)

Enzyme Classification Name

	Hydrolases (876)
	Oxidoreductases (257)
	Transferases (258)
	Lyases (126)
	Isomerases (48)
	Ligases (29)
	Translocases (18)

Membrane Protein Annotation

	PDBTM (27)
	MemProtMD (23)
	OPM (21)
	mpstruc (20)

Symmetry Type

	Asymmetric (1,444)
	Cyclic (670)
	Dihedral (161)
	Tetrahedral (27)
	Octahedral (16)
	Helical (3)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (487)
	All beta proteins (309)
	All alpha proteins (140)
	Artifacts (200)
	Alpha and beta proteins (a+b) (154)
	Multi-domain proteins (alpha and beta) (22)
	Membrane and cell surface proteins and peptides (9)
	Small proteins (9)
	Designed proteins (2)

AllSelected

1 to 25 of 2,249 Structures

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1AD1 \| pdb_00001ad1	Download File View File

DIHYDROPTEROATE SYNTHETASE (APO FORM) FROM STAPHYLOCOCCUS AUREUS

Kostrewa, D., Oefner, C., D'Arcy, A.

(1997) J Mol Biology 268: 21-30

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Staphylococcus aureus
Macromolecule	DIHYDROPTEROATE SYNTHETASE (protein)
Unique Ligands	K, TRS

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1AQM \| pdb_00001aqm	Download File View File

ALPHA-AMYLASE FROM ALTEROMONAS HALOPLANCTIS COMPLEXED WITH TRIS

Aghajari, N., Haser, R.

(1998) Protein Sci 7: 564-572

Released	1999-03-02
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Pseudoalteromonas haloplanktis
Macromolecule	ALPHA-AMYLASE (protein)
Unique Ligands	CA, CL, TRS

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1ARM \| pdb_00001arm	Download File View File

CARBOXYPEPTIDASE A WITH ZN REPLACED BY HG

Greenblatt, H.M., Feinberg, H., Tucker, P.A., Shoham, G.

(1998) Acta Crystallogr D Biol Crystallogr 54: 289-305

Released	1996-08-17
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Bos taurus
Macromolecule	HG-CARBOXYPEPTIDASE A=ALPHA= (COX) (protein)
Unique Ligands	CU, HG, TRS

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1AYX \| pdb_00001ayx	Download File View File

CRYSTAL STRUCTURE OF GLUCOAMYLASE FROM SACCHAROMYCOPSIS FIBULIGERA AT 1.7 ANGSTROMS

Sevcik, J., Hostinova, E., Gasperik, J., Solovicova, A., Wilson, K.S., Dauter, Z.

(1998) Acta Crystallogr D Biol Crystallogr 54: 854-866

Released	1998-05-13
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Saccharomycopsis fibuligera
Macromolecule	GLUCOAMYLASE (protein)
Unique Ligands	TRS

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1BG4 \| pdb_00001bg4	Download File View File

XYLANASE FROM PENICILLIUM SIMPLICISSIMUM

Schmidt, A., Kratky, C.

(1998) Protein Sci 7: 2081-2088

Released	1998-08-12
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Penicillium simplicissimum
Macromolecule	ENDO-1,4-BETA-XYLANASE (protein)
Unique Ligands	GOL, NA, TRS

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1C9O \| pdb_00001c9o	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF THE BACILLUS CALDOLYTICUS COLD SHOCK PROTEIN BC-CSP

Mueller, U., Perl, D., Schmid, F.X., Heinemann, U.

(2000) J Mol Biology 297: 975-988

Released	2000-04-02
Method	X-RAY DIFFRACTION 1.17 Å
Organisms	[Bacillus] caldolyticus
Macromolecule	COLD-SHOCK PROTEIN (protein)
Unique Ligands	NA, TRS

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1CPF \| pdb_00001cpf	Download File View File

A CATION BINDING MOTIF STABILIZES THE COMPOUND I RADICAL OF CYTOCHROME C PEROXIDASE

Miller, M.A., Han, G.W., Kraut, J.

(1994) Proc Natl Acad Sci U S A 91: 11118-11122

Released	1994-11-01
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM, TRS

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1D0I \| pdb_00001d0i	Download File View File

CRYSTAL STRUCTURE OF TYPE II DEHYDROQUINASE FROM STREPTOMYCES COELICOLOR COMPLEXED WITH PHOSPHATE IONS

Roszak, A.W., Krell, T., Hunter, I.S., Coggins, J.R., Lapthorn, A.J.

(2002) Structure 10: 493-503

Released	2000-09-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces coelicolor
Macromolecule	TYPE II 3-DEHYDROQUINATE HYDRATASE (protein)
Unique Ligands	PO4, TRS

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1DPW \| pdb_00001dpw	Download File View File

STRUCTURE OF HEN EGG-WHITE LYSOZYME IN COMPLEX WITH MPD

Weiss, M.S., Palm, G.J., Hilgenfeld, R.

(2000) Acta Crystallogr D Biol Crystallogr 56: 952-958

Released	2000-01-03
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Gallus gallus
Macromolecule	LYSOZYME (protein)
Unique Ligands	CL, MRD, TRS

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1DZ4 \| pdb_00001dz4	Download File View File

ferric p450cam from pseudomonas putida

Schlichting, I., Berendzen, J., Chu, K., Stock, A.M., Maves, S.A., Benson, D.E., Sweet, R.M., Ringe, D., Petsko, G.A., Sligar, S.G.

(2000) Science 287: 1615

Released	2000-07-20
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Pseudomonas putida
Macromolecule	CYTOCHROME P450-CAM (protein)
Unique Ligands	CAM, HEM, K, TRS

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1DZ6 \| pdb_00001dz6	Download File View File

ferrous p450cam from pseudomonas putida

Schlichting, I., Berendzen, J., Chu, K., Stock, A.M., Maves, S.A., Benson, D.E., Sweet, R.M., Ringe, D., Petsko, G.A., Sligar, S.G.

(2000) Science 287: 1615

Released	2000-03-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas putida
Macromolecule	CYTOCHROME P450-CAM (protein)
Unique Ligands	CAM, HEM, K, TRS

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1DZ8 \| pdb_00001dz8	Download File View File

oxygen complex of p450cam from pseudomonas putida

Schlichting, I., Berendzen, J., Chu, K., Stock, A.M., Maves, S.A., Benson, D.E., Sweet, R.M., Ringe, D., Petsko, G.A., Sligar, S.G.

(2000) Science 287: 1615

Released	2000-03-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas putida
Macromolecule	CYTOCHROME P450-CAM (protein)
Unique Ligands	CAM, HEM, K, OXY, TRS

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1DZ9 \| pdb_00001dz9	Download File View File

Putative oxo complex of P450cam from Pseudomonas putida

Schlichting, I., Berendzen, J., Chu, K., Stock, A.M., Maves, S.A., Benson, D.E., Sweet, R.M., Ringe, D., Petsko, G.A., Sligar, S.G.

(2000) Science 287: 1615

Released	2000-03-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pseudomonas putida
Macromolecule	CYTOCHROME P450-CAM (protein)
Unique Ligands	CAM, HEM, K, O, TRS

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1E3W \| pdb_00001e3w	Download File View File

Rat brain 3-hydroxyacyl-CoA dehydrogenase binary complex with NADH and 3-keto butyrate

Powell, A.J., Read, J.A., Brady, R.L.

(2000) J Mol Biology 303: 311

Released	2001-05-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Rattus norvegicus
Macromolecule	SHORT CHAIN 3-HYDROXYACYL-COA DEHYDROGENASE (protein)
Unique Ligands	AAE, NAD, SO4, TRS

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1E40 \| pdb_00001e40	Download File View File

Tris/maltotriose complex of chimaeric amylase from B. amyloliquefaciens and B. licheniformis at 2.2A

Brzozowski, A.M., Lawson, D.M., Turkenburg, J.P., Bisgaard-Frantzen, H., Svendsen, A., Borchert, T.V., Dauter, Z., Wilson, K.S., Davies, G.J.

(2000) Biochemistry 39: 9099

Released	2001-06-21
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bacillus amyloliquefaciens
Macromolecule	ALPHA-AMYLASE (protein)
Unique Ligands	CA, NA, TRS
Unique branched monosaccharides	GLC

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1E6U \| pdb_00001e6u	Download File View File

GDP 4-keto-6-deoxy-D-mannose epimerase reductase

Rosano, C., Izzo, G., Bolognesi, M.

(2000) J Mol Biology 303: 77

Released	2000-10-22
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Escherichia coli
Macromolecule	GDP-FUCOSE SYNTHETASE (protein)
Unique Ligands	NAP, SO4, TRS, UVW

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1E7Q \| pdb_00001e7q	Download File View File

GDP 4-keto-6-deoxy-D-mannose epimerase reductase S107A

Rosano, C., Izzo, G., Bolognesi, M.

(2000) J Mol Biology 303: 77

Released	2000-10-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	GDP-FUCOSE SYNTHETASE (protein)
Unique Ligands	NAP, SO4, TRS, UVW

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1E7R \| pdb_00001e7r	Download File View File

GDP 4-keto-6-deoxy-D-mannose epimerase reductase Y136E

Rosano, C., Izzo, G., Bolognesi, M.

(2000) J Mol Biology 303: 77

Released	2000-10-18
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Escherichia coli
Macromolecule	GDP-FUCOSE SYNTHETASE (protein)
Unique Ligands	NAP, SO4, TRS, UVW

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1E7S \| pdb_00001e7s	Download File View File

GDP 4-keto-6-deoxy-D-mannose epimerase reductase K140R

Rosano, C., Zuccotti, S., Izzo, G., Bolognesi, M.

(2000) J Mol Biology 303: 77

Released	2000-10-18
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	GDP-FUCOSE SYNTHETASE (protein)
Unique Ligands	NAP, SO4, TRS, UVW

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1E9V \| pdb_00001e9v	Download File View File

XENON BOUND IN HYDROPHOBIC CHANNEL OF HYBRID CLUSTER PROTEIN FROM DESULFOVIBRIO VULGARIS

Cooper, S.J., Bailey, S., Rizkallah, P.J., Lindley, P.F.

To be published

Released	2001-10-25
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Nitratidesulfovibrio vulgaris
Macromolecule	HYDROXYLAMINE REDUCTASE (protein)
Unique Ligands	ACY, EDO, FSO, GOL, SF4, TRS, XE

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1EKV \| pdb_00001ekv	Download File View File

HUMAN BRANCHED CHAIN AMINO ACID AMINOTRANSFERASE (MITOCHONDRIAL): THREE DIMENSIONAL STRUCTURE OF ENZYME INACTIVATED BY TRIS BOUND TO THE PYRIDOXAL-5'-PHOSPHATE ON ONE END AND ACTIVE SITE LYS202 NZ ON THE OTHER.

Yennawar, N.H., Dunbar, J.H., Conway, M., Hutson, S.M., Farber, G.K.

(2001) Acta Crystallogr D Biol Crystallogr 57: 506-515

Released	2001-03-09
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	BRANCHED CHAIN AMINO ACID AMINOTRANSFERASE (MITOCHONDRIAL) (protein)
Unique Ligands	PLP, TRS

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1ELW \| pdb_00001elw	Download File View File

Crystal structure of the TPR1 domain of HOP in complex with a HSC70 peptide

Scheufler, C., Brinker, A., Hartl, F.U., Moarefi, I.

(2000) Cell 101: 199-210

Released	2000-04-26
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	HSC70-PEPTIDE (protein) TPR1-DOMAIN OF HOP (protein)
Unique Ligands	NI, TRS

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1EVQ \| pdb_00001evq	Download File View File

THE CRYSTAL STRUCTURE OF THE THERMOPHILIC CARBOXYLESTERASE EST2 FROM ALICYCLOBACILLUS ACIDOCALDARIUS

De Simone, G., Galdiero, S., Manco, G., Lang, D., Rossi, M., Pedone, C.

(2000) J Mol Biology 303: 761-771

Released	2000-11-22
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Alicyclobacillus acidocaldarius
Macromolecule	SERINE HYDROLASE (protein)
Unique Ligands	EPE, TRS

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1EXZ \| pdb_00001exz	Download File View File

STRUCTURE OF STEM CELL FACTOR

Zhang, Z., Zhang, R., Joachimiak, A., Schlessinger, J., Kong, X.

(2000) Proc Natl Acad Sci U S A 97: 7732-7737

Released	2000-07-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	STEM CELL FACTOR (protein)
Unique Ligands	CA, SM, TRS

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1F30 \| pdb_00001f30	Download File View File

THE STRUCTURAL BASIS FOR DNA PROTECTION BY E. COLI DPS PROTEIN

Luo, J., Liu, D., White, M.A., Fox, R.O.

To be published

Released	2003-06-17
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Escherichia coli
Macromolecule	DNA PROTECTION DURING STARVATION PROTEIN (protein)
Unique Ligands	TRS, ZN

1 to 25 of 2,249 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AD1 | pdb_00001ad1

1AQM | pdb_00001aqm

1ARM | pdb_00001arm

1AYX | pdb_00001ayx

1BG4 | pdb_00001bg4

1C9O | pdb_00001c9o

1CPF | pdb_00001cpf

1D0I | pdb_00001d0i

1DPW | pdb_00001dpw

1DZ4 | pdb_00001dz4

1DZ6 | pdb_00001dz6

1DZ8 | pdb_00001dz8

1DZ9 | pdb_00001dz9

1E3W | pdb_00001e3w

1E40 | pdb_00001e40

1E6U | pdb_00001e6u

1E7Q | pdb_00001e7q

1E7R | pdb_00001e7r

1E7S | pdb_00001e7s

1E9V | pdb_00001e9v

1EKV | pdb_00001ekv

1ELW | pdb_00001elw

1EVQ | pdb_00001evq

1EXZ | pdb_00001exz

1F30 | pdb_00001f30