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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 815 Structures.

Refinements

Structure Determination Methodology

experimental (815)

Scientific Name of Source Organism

	Homo sapiens (548)
	synthetic construct (58)
	Bos taurus (34)
	Escherichia coli (14)
	Oryctolagus cuniculus (9)
	Severe acute respiratory syndrome coronavirus 2 (9)
	Pyrococcus furiosus (8)
	Toxoplasma gondii (8)
	Equus caballus (7)
	Desulfovibrio desulfuricans (6)

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Taxonomy

	Eukaryota (662)
	Bacteria (133)
	other sequences (58)
	Riboviria (23)
	Archaea (12)
	Eukaryota (eukaryotes) (1)
	Varidnaviria (1)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (787)
	ELECTRON MICROSCOPY (24)
	SOLUTION NMR (4)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

	Protein (815)
	DNA (39)
	RNA (20)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (61)
	1.5 - 2.0 (332)
	2.0 - 2.5 (299)
	2.5 - 3.0 (97)
	3.0 - 3.5 (16)
	3.5 - 4.0 (3)
	> 4.5 (1)

Release Date

	1980 - 1984 (1)
	1995 - 1999 (8)
	2000 - 2004 (28)
	2005 - 2009 (164)
	2010 - 2014 (238)
	2015 - 2019 (247)
	2020 - 2024 (125)
	2025 - 2029 (4)

Enzyme Classification Name

	Transferases (218)
	Oxidoreductases (76)
	Hydrolases (133)
	Translocases (30)
	Lyases (24)
	Ligases (19)
	Isomerases (9)

Membrane Protein Annotation

	PDBTM (34)
	MemProtMD (29)
	mpstruc (20)
	OPM (14)

Symmetry Type

	Asymmetric (562)
	Cyclic (235)
	Dihedral (53)
	Helical (2)
	Icosahedral (2)
	Octahedral (1)
	Tetrahedral (1)

SCOP Classification

	Membrane and cell surface proteins and peptides (29)
	Alpha and beta proteins (a/b) (132)
	All beta proteins (113)
	All alpha proteins (71)
	Artifacts (62)
	Alpha and beta proteins (a+b) (60)
	Small proteins (34)
	Multi-domain proteins (alpha and beta) (10)
	Low resolution protein structures (1)
	Designed proteins (1)

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AllSelected

1 to 25 of 815 Structures

Page 1 of 33

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1AQN \| pdb_00001aqn	Download File View File

SUBTILISIN MUTANT 8324

Whitlow, M., Howard, A.J., Wood, J.F.

To be published

Released	1998-01-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus amyloliquefaciens
Macromolecule	SUBTILISIN 8324 (protein)
Unique Ligands	CA, IPA, UNX

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1AU9 \| pdb_00001au9	Download File View File

SUBTILISIN BPN' MUTANT 8324 IN CITRATE

Whitlow, M., Howard, A.J., Wood, J.F.

(1989) Biochemistry 28: 7205-7213

Released	1997-12-31
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bacillus amyloliquefaciens
Macromolecule	SUBTILISIN BPN' (protein)
Unique Ligands	CA, IPA, UNX

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1B3O \| pdb_00001b3o	Download File View File

TERNARY COMPLEX OF HUMAN TYPE-II INOSINE MONOPHOSPHATE DEHYDROGENASE WITH 6-CL-IMP AND SELENAZOLE ADENINE DINUCLEOTIDE

Colby, T.D., Vanderveen, K., Strickler, M.D., Goldstein, B.M.

(1999) Proc Natl Acad Sci U S A 96: 3531-3536

Released	1999-04-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (INOSINE MONOPHOSPHATE DEHYDROGENASE 2) (protein)
Unique Ligands	CPR, SAE, UNX

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1FGG \| pdb_00001fgg	Download File View File

CRYSTAL STRUCTURE OF 1,3-GLUCURONYLTRANSFERASE I (GLCAT-I) COMPLEXED WITH GAL-GAL-XYL, UDP, AND MN2+

Pedersen, L.C., Tsuchida, K., Kitagawa, H., Sugahara, K., Darden, T.A.

(2000) J Biological Chem 275: 34580-34585

Released	2001-01-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	GLUCURONYLTRANSFERASE I (protein)
Unique Ligands	MN, UDP, UNX
Unique branched monosaccharides	GAL

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1H0H \| pdb_00001h0h	Download File View File

Tungsten containing Formate Dehydrogenase from Desulfovibrio Gigas

Raaijmakers, H.C.A.

(2002) Structure 10: 1261

Released	2003-02-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Megalodesulfovibrio gigas
Macromolecule	FORMATE DEHYDROGENASE SUBUNIT ALPHA (protein) FORMATE DEHYDROGENASE SUBUNIT BETA (protein)
Unique Ligands	2MD, CA, EPE, MGD, SF4, UNX, W

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1H1A \| pdb_00001h1a	Download File View File

Thermophilic beta-1,4-xylanase from Chaetomium thermophilum

Hakulinen, N., Rouvinen, J.

(2003) Eur J Biochem 270: 1399-1412

Released	2003-07-04
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Thermochaetoides thermophila
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	CA, GOL, SO4, UNX

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1I1W \| pdb_00001i1w	Download File View File

0.89A Ultra high resolution structure of a Thermostable Xylanase from Thermoascus Aurantiacus

Natesh, R., Ramakumar, S., Viswamitra, M.A.

(2003) Acta Crystallogr D Biol Crystallogr 59: 105-117

Released	2003-01-07
Method	X-RAY DIFFRACTION 0.89 Å
Organisms	Thermoascus aurantiacus
Macromolecule	ENDO-1,4-BETA-XYLANASE (protein)
Unique Ligands	ACN, EOH, GOL, UNX

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1ITK \| pdb_00001itk	Download File View File

Crystal structure of catalase-peroxidase from Haloarcula marismortui

Yamada, Y., Fujiwara, T., Sato, T., Igarashi, N., Tanaka, N.

(2002) Nat Struct Biol 9: 691-695

Released	2002-08-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Haloarcula marismortui
Macromolecule	catalase-peroxidase (protein)
Unique Ligands	CL, HEM, SO4, UNX

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1J5E \| pdb_00001j5e	Download File View File

Structure of the Thermus thermophilus 30S Ribosomal Subunit

Wimberly, B.T., Brodersen, D.E., Clemons Jr., W.M., Morgan-Warren, R., Carter, A.P., Vonrhein, C., Hartsch, T., Ramakrishnan, V.

(2000) Nature 407: 327-339

Released	2002-04-12
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Thermus thermophilus
Macromolecule	Unique protein chains: 20 Unique nucleic acid chains: 1
Unique Ligands	UNX, ZN

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1JI4 \| pdb_00001ji4	Download File View File

NAP protein from helicobacter pylori

Zanotti, G., Papinutto, E., Dundon, W.G., Battistutta, R., Seveso, M., Del Giudice, G., Rappuoli, R., Montecucco, C.

(2002) J Mol Biology 323: 125-130

Released	2002-10-09
Method	X-RAY DIFFRACTION 2.52 Å
Organisms	Helicobacter pylori
Macromolecule	NEUTROPHIL-ACTIVATING PROTEIN A (protein)
Unique Ligands	FE, MPD, UNX

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1JQE \| pdb_00001jqe	Download File View File

Crystal Structure Analysis of Human Histamine Methyltransferase (Ile105 Polymorphic Variant) Complexed with AdoHcy and Antimalarial Drug Quinacrine

Horton, J.R., Sawada, K., Nishibori, M., Zhang, X., Cheng, X.

(2001) Structure 9: 837-849

Released	2002-08-06
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Homo sapiens
Macromolecule	Histamine N-Methyltransferase (protein)
Unique Ligands	QUN, SAH, UNX

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1JQK \| pdb_00001jqk	Download File View File

Crystal structure of carbon monoxide dehydrogenase from Rhodospirillum rubrum

Drennan, C.L., Heo, J., Sintchak, M.D., Schreiter, E., Ludden, P.W.

(2001) Proc Natl Acad Sci U S A 98: 11973-11978

Released	2001-10-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Rhodospirillum rubrum
Macromolecule	carbon monoxide dehydrogenase (protein)
Unique Ligands	FE2, SF4, UNX, WCC

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1KDG \| pdb_00001kdg	Download File View File

Crystal structure of the flavin domain of cellobiose dehydrogenase

Hallberg, B.M., Henriksson, G., Pettersson, G., Divne, C.

(2002) J Mol Biology 315: 421-434

Released	2002-11-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Phanerodontia chrysosporium
Macromolecule	cellobiose dehydrogenase (protein)
Unique Ligands	6FA, EMT, HG, MAN, NAG, UNX

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1KHC \| pdb_00001khc	Download File View File

Crystal Structure of the PWWP Domain of Mammalian DNA Methyltransferase Dnmt3b

Qiu, C., Sawada, K., Zhang, X., Cheng, X.

(2002) Nat Struct Biol 9: 217-224

Released	2002-02-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	DNA cytosine-5 methyltransferase 3B2 (protein)
Unique Ligands	UNX

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1LD4 \| pdb_00001ld4	Download File View File

Placement of the Structural Proteins in Sindbis Virus

Zhang, W., Mukhopadhyay, S., Pletnev, S.V., Baker, T.S., Kuhn, R.J., Rossmann, M.G.

(2002) J Virol 76: 11645-11658

Released	2002-11-04
Method	ELECTRON MICROSCOPY 11.4 Å
Organisms	Saccharomyces cerevisiae Sindbis virus
Macromolecule	Coat protein C (protein) GENERAL CONTROL PROTEIN GCN4 (protein) Spike glycoprotein E1 (protein)
Unique Ligands	UNX

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1LFO \| pdb_00001lfo	Download File View File

LIVER FATTY ACID BINDING PROTEIN-OLEATE COMPLEX

Thompson, J., Winter, N., Terwey, D., Bratt, J., Banaszak, L.

(1997) J Biological Chem 272: 7140-7150

Released	1997-06-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Rattus norvegicus
Macromolecule	LIVER FATTY ACID BINDING PROTEIN (protein)
Unique Ligands	BEO, OLA, UNX

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1OBP \| pdb_00001obp	Download File View File

ODORANT-BINDING PROTEIN FROM BOVINE NASAL MUCOSA

Tegoni, M., Cambillau, C.

(1996) Nat Struct Biol 3: 863-867

Released	1996-10-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Bos taurus
Macromolecule	ODORANT-BINDING PROTEIN (protein)
Unique Ligands	UNX

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1R9L \| pdb_00001r9l	Download File View File

structure analysis of ProX in complex with glycine betaine

Schiefner, A., Breed, J., Bosser, L., Kneip, S., Gade, J., Holtmann, G., Diederichs, K., Welte, W., Bremer, E.

(2004) J Biological Chem 279: 5588-5596

Released	2004-02-24
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Escherichia coli
Macromolecule	Glycine betaine-binding periplasmic protein (protein)
Unique Ligands	BET, UNX

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1R9Q \| pdb_00001r9q	Download File View File

structure analysis of ProX in complex with proline betaine

Schiefner, A., Breed, J., Bosser, L., Kneip, S., Gade, J., Holtmann, G., Diederichs, K., Welte, W., Bremer, E.

(2004) J Biological Chem 279: 5588-5596

Released	2004-02-24
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli
Macromolecule	Glycine betaine-binding periplasmic protein (protein)
Unique Ligands	PBE, UNX

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1RKT \| pdb_00001rkt	Download File View File

Crystal structure of yfiR, a putative transcriptional regulator from Bacillus subtilis

Anderson, W.F., Rajan, S.S., Yang, X., Midwest Center for Structural Genomics (MCSG)

(2006) Proteins 65: 255-257

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus subtilis
Macromolecule	protein yfiR (protein)
Unique Ligands	UNX

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1S2A \| pdb_00001s2a	Download File View File

Crystal structures of prostaglandin D2 11-ketoreductase in complex with the non-steroidal anti-inflammatory drugs flufenamic acid and indomethacin

Lovering, A.L., Ride, J.P., Bunce, C.M., Desmond, J.C., Cummings, S.M., White, S.A.

(2004) Cancer Res 64: 1802-1810

Released	2004-03-23
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Aldo-keto reductase family 1 member C3 (protein)
Unique Ligands	DMS, IMN, NAP, UNX

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1S3L \| pdb_00001s3l	Download File View File

Structural and Functional Characterization of a Novel Archaeal Phosphodiesterase

Chen, S., Busso, D., Yakunin, A.F., Kuznetsova, E., Proudfoot, M., Jancrick, J., Kim, R., Kim, S.-H., Berkeley Structural Genomics Center (BSGC)

(2004) J Biological Chem 279: 31854-31862

Released	2004-08-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	Hypothetical protein MJ0936 (protein)
Unique Ligands	PO4, UNX

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1S96 \| pdb_00001s96	Download File View File

The 2.0 A X-ray structure of Guanylate Kinase from E.coli

Kreusch, A., Spraggon, G., Klock, H.E., McMullan, D., Vincent, J., Rodrigues, K., Lesley, S.A.

To be published

Released	2004-02-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	Guanylate kinase (protein)
Unique Ligands	PO4, UNX

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1S9R \| pdb_00001s9r	Download File View File

CRYSTAL STRUCTURE OF ARGININE DEIMINASE COVALENTLY LINKED WITH A REACTION INTERMEDIATE

Das, K., Buttler, G.H., Kwiatkowski, V., Clark Jr., A.D., Yadav, P., Arnold, E.

(2004) Structure 12: 657-667

Released	2004-04-13
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mycoplasmopsis arginini
Macromolecule	Arginine deiminase (protein)
Unique Ligands	ARG, TRS, UNX

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1SOM \| pdb_00001som	Download File View File

TORPEDO CALIFORNICA ACETYLCHOLINESTERASE INHIBITED BY NERVE AGENT GD (SOMAN).

Greenblatt, H.M., Millard, C.B., Sussman, J.L., Silman, I.

(1999) Biochemistry 38: 7032-7039

Released	1999-06-25
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Tetronarce californica
Macromolecule	PROTEIN (ACETYLCHOLINESTERASE) (protein)
Unique Ligands	NAG, UNX, VXA

1 to 25 of 815 Structures

Page 1 of 33

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AQN | pdb_00001aqn

1AU9 | pdb_00001au9

1B3O | pdb_00001b3o

1FGG | pdb_00001fgg

1H0H | pdb_00001h0h

1H1A | pdb_00001h1a

1I1W | pdb_00001i1w

1ITK | pdb_00001itk

1J5E | pdb_00001j5e

1JI4 | pdb_00001ji4

1JQE | pdb_00001jqe

1JQK | pdb_00001jqk

1KDG | pdb_00001kdg

1KHC | pdb_00001khc

1LD4 | pdb_00001ld4

1LFO | pdb_00001lfo

1OBP | pdb_00001obp

1R9L | pdb_00001r9l

1R9Q | pdb_00001r9q

1RKT | pdb_00001rkt

1S2A | pdb_00001s2a

1S3L | pdb_00001s3l

1S96 | pdb_00001s96

1S9R | pdb_00001s9r

1SOM | pdb_00001som