RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Chemical ID(s) = XLS

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Chemical Attributes

Help

NOT

Count

Add Subquery

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 22 Structures.

Refinements

Structure Determination Methodology

experimental (22)

Scientific Name of Source Organism

	Piromyces sp. E2 (7)
	Actinoplanes missouriensis (4)
	Streptomyces rubiginosus (4)
	Lentinula edodes (2)
	Escherichia coli O157:H7 (1)
	Streptococcus pneumoniae (1)
	Thermothelomyces (1)
	Trichoderma reesei (1)
	Trichormus variabilis ATCC 29413 (1)

Taxonomy

	Bacteria (11)
	Eukaryota (11)

Experimental Method

X-RAY DIFFRACTION (22)

Polymer Entity Type

Protein (22)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (12)
	2.0 - 2.5 (8)
	2.5 - 3.0 (1)

Release Date

	1990 - 1994 (8)
	2005 - 2009 (2)
	2010 - 2014 (1)
	2015 - 2019 (6)
	2020 - 2024 (5)

Enzyme Classification Name

	Isomerases (15)
	Hydrolases (4)
	Lyases (1)

Symmetry Type

	Dihedral (16)
	Cyclic (4)
	Asymmetric (3)

SCOP Classification

	Alpha and beta proteins (a/b) (15)
	All beta proteins (3)
	All alpha proteins (1)

AllSelected

1 to 22 of 22 Structures

Page 1 of 1

Sort by

Explore in 3D

1XIC \| pdb_00001xic	Download File View File

MODES OF BINDING SUBSTRATES AND THEIR ANALOGUES TO THE ENZYME D-XYLOSE ISOMERASE

Carrell, H.L., Glusker, J.P.

(1994) Acta Crystallogr D Biol Crystallogr 50: 113-123

Released	1994-06-22
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptomyces rubiginosus
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	MN, XLS

Explore in 3D

2BRP \| pdb_00002brp	Download File View File

Crystal structure of S. pneumoniae hyaluronate lyase in complex with W249b

Rigden, D.J., Jedrzejas, M.J.

(2006) Glycobiology 16: 757-765

Released	2006-04-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus pneumoniae
Macromolecule	HYALURONATE LYASE (protein)
Unique Ligands	SIE, SO4, XLS

Explore in 3D

2QW5 \| pdb_00002qw5	Download File View File

CRYSTAL STRUCTURE OF A PUTATIVE SUGAR PHOSPHATE ISOMERASE/EPIMERASE (AVA4194) FROM ANABAENA VARIABILIS ATCC 29413 AT 1.78 A RESOLUTION

Joint Center for Structural Genomics (JCSG)

To be published

Released	2007-09-04
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Trichormus variabilis ATCC 29413
Macromolecule	Xylose isomerase-like TIM barrel (protein)
Unique Ligands	CL, GOL, XLS, ZN

Explore in 3D

3MXG \| pdb_00003mxg	Download File View File

Structure of Shiga Toxin type 2 (Stx2) B Pentamer Mutant Q40L

Kovall, R.A., Vander Wielen, B.D., Friedmann, D.R., Flagler, M.J.

(2010) PLoS One 5: e15153-e15153

Released	2011-01-12
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Escherichia coli O157:H7
Macromolecule	Shiga-like toxin 2 subunit B (protein)
Unique Ligands	XLS

Explore in 3D

3XIS \| pdb_00003xis	Download File View File

A METAL-MEDIATED HYDRIDE SHIFT MECHANISM FOR XYLOSE ISOMERASE BASED ON THE 1.6 ANGSTROMS STREPTOMYCES RUBIGINOSUS STRUCTURES WITH XYLITOL AND D-XYLOSE

Whitlow, M., Howard, A.J.

(1991) Proteins 9: 153-173

Released	1992-07-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptomyces rubiginosus
Macromolecule	XYLOSE ISOMERASE (protein)
Unique Ligands	MG, XLS, XYS

Explore in 3D

4D5V \| pdb_00004d5v	Download File View File

Hypocrea jecorina cellobiohydrolase Cel7A E217Q soaked with xylotetraose.

Momeni, M.H., Stahlberg, J., Hansson, H.

(2015) FEBS J 282: 2167

Released	2015-03-25
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Trichoderma reesei
Macromolecule	CELLULOSE 1,4-BETA-CELLOBIOSIDASE (protein)
Unique Ligands	CO, NAG
Unique branched monosaccharides	XLS, XYP

Explore in 3D

4XIS \| pdb_00004xis	Download File View File

A METAL-MEDIATED HYDRIDE SHIFT MECHANISM FOR XYLOSE ISOMERASE BASED ON THE 1.6 ANGSTROMS STREPTOMYCES RUBIGINOSUS STRUCTURES WITH XYLITOL AND D-XYLOSE

Whitlow, M., Howard, A.J.

(1991) Proteins 9: 153-173

Released	1992-07-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptomyces rubiginosus
Macromolecule	XYLOSE ISOMERASE (protein)
Unique Ligands	MN, XLS, XYS

Explore in 3D

5NH7 \| pdb_00005nh7	Download File View File

Crystal structure of xylose isomerase from Piromyces E2 in complex with two Mg2+ ions and xylose

Rozeboom, H.J., Janssen, D.B.

(2017) Biochemistry 56: 5991-6005

Released	2017-11-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Piromyces sp. E2
Macromolecule	Xylose isomerase (protein)
Unique Ligands	MG, SO4, XLS, XYP, XYS

Explore in 3D

5NH8 \| pdb_00005nh8	Download File View File

Crystal structure of xylose isomerase from Piromyces E2 in complex with two Ca2+ ions and xylose

Rozeboom, H.J., Janssen, D.B.

(2017) Biochemistry 56: 5991-6005

Released	2017-11-01
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Piromyces sp. E2
Macromolecule	Xylose isomerase (protein)
Unique Ligands	CA, SO4, XLS, XYP

Explore in 3D

5NH9 \| pdb_00005nh9	Download File View File

Crystal structure of xylose isomerase from Piromyces E2 in complex with two Mn2+ ions and xylose

Rozeboom, H.J., Janssen, D.B.

(2017) Biochemistry 56: 5991-6005

Released	2017-11-01
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Piromyces sp. E2
Macromolecule	Xylose isomerase (protein)
Unique Ligands	MN, SO4, XLS, XYP

Explore in 3D

5NHD \| pdb_00005nhd	Download File View File

Crystal structure of xylose isomerase from Piromyces E2 in complex with 2 Ni2+ ions and xylose

Rozeboom, H.J., Janssen, D.B.

(2017) Biochemistry 56: 5991-6005

Released	2017-11-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Piromyces sp. E2
Macromolecule	Xylose isomerase (protein)
Unique Ligands	NI, SO4, XLS, XYP, XYS

Explore in 3D

5NHE \| pdb_00005nhe	Download File View File

Crystal structure of xylose isomerase from Piromyces E2 in complex with two Cd2+ ions and xylose

Rozeboom, H.J., Janssen, D.B.

(2017) Biochemistry 56: 5991-6005

Released	2017-11-01
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Piromyces sp. E2
Macromolecule	Xylose isomerase (protein)
Unique Ligands	CD, SO4, XLS, XYP, XYS

Explore in 3D

5XIN \| pdb_00005xin	Download File View File

PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES

Janin, J.

(1992) Biochemistry 31: 5449-5458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	MG, XLS

Explore in 3D

6T8E \| pdb_00006t8e	Download File View File

Crystal structure of native xylose isomerase from Piromyces E2 grown in yeast, in complex with xylose

Rozeboom, H.J., Janssen, D.B.

(2020) Biotechnol Biofuels 13: 5-5

Released	2020-01-29
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Piromyces sp. E2
Macromolecule	Xylose isomerase (protein)
Unique Ligands	CA, SO4, XLS, XYP, XYS

Explore in 3D

6T8F \| pdb_00006t8f	Download File View File

Crystal structure of mutant xylose isomerase (V270A/A273G) from Piromyces E2 grown in yeast, in complex with xylose

Rozeboom, H.J., Janssen, D.B.

(2020) Biotechnol Biofuels 13: 5-5

Released	2020-01-29
Method	X-RAY DIFFRACTION 2 Å
Organisms	Piromyces sp. E2
Macromolecule	Xylose isomerase (protein)
Unique Ligands	CA, SO4, XLS, XYP, XYS

Explore in 3D

6XIM \| pdb_00006xim	Download File View File

PROTEIN ENGINEERING OF XYLOSE (GLUCOSE) ISOMERASE FROM ACTINOPLANES MISSOURIENSIS. 1. CRYSTALLOGRAPHY AND SITE-DIRECTED MUTAGENESIS OF METAL BINDING SITES

Janin, J.

(1992) Biochemistry 31: 5449-5458

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Actinoplanes missouriensis
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	MG, XLS

Explore in 3D

7YO7 \| pdb_00007yo7	Download File View File

Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose, 5 seconds

Yang, L.Y.

To be published

Released	2023-08-09
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Lentinula edodes
Macromolecule	Beta-D-xylosidase/beta-D-glucosidase (protein)
Unique Ligands	BKR, NAG, XLS
Unique branched monosaccharides	MAN, NAG

Explore in 3D

8CBC \| pdb_00008cbc	Download File View File

Crystal structure of Thermothelomyces thermophila GH30 (double mutant EE) in complex with xylotriose.

Dimarogona, M., Pentari, C., Kosinas, C., Topakas, E.

(2024) Biotechnol Bioeng 121: 2067-2078

Released	2024-05-22
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Thermothelomyces
Macromolecule	GH30 family xylanase (protein)
Unique Ligands	EDO, PEG
Unique branched monosaccharides	BMA, MAN, NAG, XLS, XYP

Explore in 3D

8GYY \| pdb_00008gyy	Download File View File

Bifunctional xylosidase/glucosidase LXYL with intermediate substrate xylose, 120 seconds

Yang, L.Y.

To be published

Released	2023-10-25
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Lentinula edodes
Macromolecule	Beta-D-xylosidase/beta-D-glucosidase (protein)
Unique Ligands	BKR, BMA, MAN, NAG, XLS
Unique branched monosaccharides	AH2, BMA, MAN, NAG