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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Expression Organism = "Escherichia coli 'BL21-Gold(DE3)pLysS AG"

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Search Summary

This query matches 2,719 Structures.

Refinements

Structure Determination Methodology

experimental (2,719)

Scientific Name of Source Organism

	Homo sapiens (632)
	synthetic construct (168)
	Mus musculus (115)
	Arabidopsis thaliana (112)
	Escherichia coli K-12 (97)
	Escherichia coli (85)
	Severe acute respiratory syndrome coronavirus 2 (61)
	Cricetulus griseus (34)
	Mycobacterium tuberculosis H37Rv (31)
	Saccharomyces cerevisiae (31)

More...

Taxonomy

	Eukaryota (1,275)
	Bacteria (1,273)
	other sequences (171)
	Riboviria (169)
	Archaea (59)
	Duplodnaviria (39)
	unclassified sequences (14)
	Monodnaviria (11)
	unclassified bacterial viruses (6)
	Varidnaviria (4)

Experimental Method

	X-RAY DIFFRACTION (2,212)
	ELECTRON MICROSCOPY (446)
	SOLUTION NMR (59)
	SOLID-STATE NMR (2)

Polymer Entity Type

	Protein (2,719)
	DNA (218)
	RNA (123)
	NA-hybrid (6)

Refinement Resolution (Å)

	0.5 - 1.0 (6)
	1.0 - 1.5 (256)
	1.5 - 2.0 (795)
	2.0 - 2.5 (649)
	2.5 - 3.0 (416)
	3.0 - 3.5 (310)
	3.5 - 4.0 (127)
	4.0 - 4.5 (63)
	> 4.5 (36)

Release Date

	2010 - 2014 (28)
	2015 - 2019 (933)
	2020 - 2024 (1,622)
	2025 - 2029 (136)

Enzyme Classification Name

	Transferases (538)
	Hydrolases (488)
	Oxidoreductases (268)
	Isomerases (124)
	Lyases (103)
	Ligases (54)
	Translocases (14)

Membrane Protein Annotation

	PDBTM (112)
	mpstruc (71)
	MemProtMD (71)
	OPM (61)

Symmetry Type

	Asymmetric (1,631)
	Cyclic (885)
	Dihedral (198)
	Octahedral (22)
	Helical (13)
	Tetrahedral (4)
	Icosahedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (179)
	All beta proteins (150)
	Alpha and beta proteins (a+b) (154)
	Artifacts (123)
	All alpha proteins (66)
	Multi-domain proteins (alpha and beta) (20)
	Membrane and cell surface proteins and peptides (6)
	Small proteins (4)

AllSelected

1 to 25 of 2,719 Structures

Page 1 of 109

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2LW1 \| pdb_00002lw1	Download File View File

The C-terminal domain of the Uup protein is a DNA-binding coiled coil motif

Carlier, L., Haase, A.S., Burgos Zepeda, M.Y., Dassa, E., Lequin, O.

(2012) J Struct Biol 180: 577-584

Released	2012-09-19
Method	SOLUTION NMR
Organisms	Escherichia coli K-12
Macromolecule	ABC transporter ATP-binding protein uup (protein)

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2MWI \| pdb_00002mwi	Download File View File

The structure of the carboxy-terminal domain of DNTTIP1

Schwabe, J.W.R., Muskett, F.W., Itoh, T.

(2015) Nucleic Acids Res 43: 2033-2044

Released	2015-02-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Deoxynucleotidyltransferase terminal-interacting protein 1 (protein)

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3Q16 \| pdb_00003q16	Download File View File

Linkage between the Bacterial Acid Stress and Stringent Responses: The Structure of the Inducible Lysine Decarboxylase

El Bakkouri, M., Pai, E.F., Houry, W.A.

(2011) EMBO J 30: 931-944

Released	2011-02-16
Method	X-RAY DIFFRACTION 4.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Lysine decarboxylase, inducible (protein)

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3TCY \| pdb_00003tcy	Download File View File

Crystallographic structure of phenylalanine hydroxylase from Chromobacterium violaceum (cPAH) bound to phenylalanine in a site distal to the active site

Ronau, J.A., Abu-Omar, M.M., Das, C.

(2013) Eur Biophys J 42: 691-708

Released	2012-08-22
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Chromobacterium violaceum
Macromolecule	Phenylalanine-4-hydroxylase (protein)
Unique Ligands	CO, EDO, PHE

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3TK2 \| pdb_00003tk2	Download File View File

Crystallographic structure of phenylalanine hydroxylase from Chromobacterium violaceum cocrystallized with phenylalanine in a site distal to the active site

Ronau, J.A., Abu-Omar, M.M., Das, C.

(2013) Eur Biophys J 42: 691-708

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Chromobacterium violaceum
Macromolecule	Phenylalanine-4-hydroxylase (protein)
Unique Ligands	CO, PHE

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3TK4 \| pdb_00003tk4	Download File View File

Crystal structure of phenylalanine hydroxylase from Chromobacterium violaceum bound to cobalt

Ronau, J.A., Abu-Omar, M.M., Das, C.

(2013) Eur Biophys J 42: 691-708

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Chromobacterium violaceum
Macromolecule	Phenylalanine-4-hydroxylase (protein)
Unique Ligands	CO

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3TWH \| pdb_00003twh	Download File View File

Selenium Derivatized RNA/DNA Hybrid in complex with RNase H Catalytic Domain D132N Mutant

Rob, A., Gerlits, O., Jiang, J.S., Gan, J.H., Huang, Z.

(2014) Acta Crystallogr D Biol Crystallogr 70: 354-361

Released	2012-10-03
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Halalkalibacterium halodurans
Macromolecule	Ribonuclease H (protein) DNA (5'-D(APTP(SDG)PTPCP(SDG))-3') (nucleic acid) RNA (5'-R(UPCPGPAPCPA)-3') (nucleic acid)
Unique Ligands	MG, PO4

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3ULD \| pdb_00003uld	Download File View File

High resolution structure of DNA/RNA hybrid in complex with RNase H catalytic domain D132N mutant

Gan, J.H., Abdur, R., Huang, Z.

To be published

Released	2012-11-14
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Halalkalibacterium halodurans
Macromolecule	Ribonuclease H (protein) DNA (5'-D(APTPGPTPCP(PGN))-3') (nucleic acid) RNA (5'-R(UPCPGPAPCPA)-3') (nucleic acid)
Unique Ligands	MG

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4EG2 \| pdb_00004eg2	Download File View File

2.2 Angstrom Crystal Structure of Cytidine deaminase from Vibrio cholerae in Complex with Zinc and Uridine

Minasov, G., Wawrzak, Z., Skarina, T., Wang, Y., Grimshaw, S., Papazisi, L., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Vibrio cholerae
Macromolecule	Cytidine deaminase (protein)
Unique Ligands	ACT, MG, URI, ZN

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4G4K \| pdb_00004g4k	Download File View File

Structure of the Staphylococcus aureus AgrA LytTR Domain

Leonard, P.G., Bezar, I.F., Stock, A.M.

(2012) Biochemistry 51: 10035-10043

Released	2012-12-19
Method	X-RAY DIFFRACTION 1.52 Å
Organisms	Staphylococcus aureus
Macromolecule	Accessory gene regulator protein A (protein)
Unique Ligands	GOL

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4IC9 \| pdb_00004ic9	Download File View File

Crystal structure of the full-length matrix subunit (p15) of the Feline Immunodeficiency Virus (FIV) Gag polyprotein

Serriere, J., Robert, X., Perez, M., Gouet, P., Guillon, C.

(2013) Retrovirology 10: 64-64

Released	2013-07-10
Method	X-RAY DIFFRACTION 2 Å
Organisms	Feline immunodeficiency virus (isolate Petaluma)
Macromolecule	Matrix protein p15 (protein)
Unique Ligands	EDO

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4ICA \| pdb_00004ica	Download File View File

Crystal structure of a C-terminal truncated form of the matrix subunit (p15) of Feline Immunodeficiency Virus (FIV)

Serriere, J., Robert, X., Perez, M., Gouet, P., Guillon, C.

(2013) Retrovirology 10: 64-64

Released	2013-07-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Feline immunodeficiency virus (isolate Petaluma)
Macromolecule	Matrix protein p15 (protein)
Unique Ligands	7PE

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4M8L \| pdb_00004m8l	Download File View File

crystal structure of RpiA-R5P complex

Rostankowski, R., Borek, D., Orlikowska, M., Nakka, C., Grimshaw, S., Otwinowski, Z., Center for Structural Genomics of Infectious Diseases (CSGID)

To be published

Released	2013-10-02
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Francisella tularensis
Macromolecule	Ribose-5-phosphate isomerase A (protein)
Unique Ligands	5RP, ARF, CL

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4P5H \| pdb_00004p5h	Download File View File

Structure of Clostridium perfringens Enterotoxin with a peptide derived from a modified version of ECL-2 of Claudin 2

Naylor, C.E., Yelland, T.S., Basak, A.K.

(2014) J Mol Biology 426: 3134-3147

Released	2014-07-16
Method	X-RAY DIFFRACTION 3.38 Å
Organisms	Clostridium perfringens Mus musculus
Macromolecule	Claudin-2 (protein) Heat-labile enterotoxin B chain (protein)

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4PDB \| pdb_00004pdb	Download File View File

CRYSTAL STRUCTURE OF BACILLUS ANTHRACIS RIBOSOMAL PROTEIN S8 IN COMPLEX WITH AN RNA APTAMER

Davlieva, M., Shamoo, Y., Nikonowicz, E.P.

(2014) Nucleic Acids Res 42: 10795-10808

Released	2014-09-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bacillus anthracis str. Sterne synthetic construct
Macromolecule	30S ribosomal protein S8 (protein) SELEX RNA aptamer (nucleic acid)

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4PEL \| pdb_00004pel	Download File View File

S1C mutant of Penicillin G acylase from Kluyvera citrophila

Ramasamy, S., Chand, D., Varshney, N.K., Brannigan, J.A., Wilkinson, A.J., Suresh, C.G.

To be published

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Kluyvera cryocrescens
Macromolecule	Penicillin G acylase subunit alpha (protein) Penicillin G acylase subunit beta (protein)
Unique Ligands	CA

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4PEM \| pdb_00004pem	Download File View File

Crystal Structure of S1G mutant of Penicillin G Acylase from Kluyvera citrophila

Ramasamy, S., Varshney, N.K., Brannigan, J.A., Wilkinson, A.J., Suresh, C.G.

To be published

Released	2015-07-22
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Kluyvera cryocrescens
Macromolecule	Penicillin G acylase Alpha (protein) Penicillin G acylase Beta (protein)
Unique Ligands	CA

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4PGR \| pdb_00004pgr	Download File View File

Crystal structure of YetJ from Bacillus Subtilis at pH 8

Liu, Q., Chang, Y., Hendrickson, W.A., New York Consortium on Membrane Protein Structure (NYCOMPS)

(2014) Science 344: 1131-1135

Released	2014-06-04
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Uncharacterized protein YetJ (protein)

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4PGS \| pdb_00004pgs	Download File View File

Crystal structure of YetJ from Bacillus Subtilis at pH 6 by soaking

Liu, Q., Chang, Y., Hendrickson, W.A., New York Consortium on Membrane Protein Structure (NYCOMPS)

(2014) Science 344: 1131-1135

Released	2014-06-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Uncharacterized protein YetJ (protein)

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4PGU \| pdb_00004pgu	Download File View File

Crystal structure of YetJ from Bacillus Subtilis at pH 7 by soaking

Liu, Q., Chang, Y., Hendrickson, W.A., New York Consortium on Membrane Protein Structure (NYCOMPS)

(2014) Science 344: 1131-1135

Released	2014-06-04
Method	X-RAY DIFFRACTION 3.401 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Uncharacterized protein YetJ (protein)

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4PGW \| pdb_00004pgw	Download File View File

Crystal structure of YetJ from Bacillus Subtilis at pH 6 by Pt-SAD

Liu, Q., Chang, Y., Hendrickson, W.A., New York Consortium on Membrane Protein Structure (NYCOMPS)

(2014) Science 344: 1131-1135

Released	2014-06-04
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Bacillus subtilis subsp. subtilis str. 168
Macromolecule	Uncharacterized protein YetJ (protein)
Unique Ligands	PT

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4PHR \| pdb_00004phr	Download File View File

Domain of unknown function 1792 (DUF1792) with manganese

Zhang, H., Wu, H.

(2014) Nat Commun 5: 4339-4339

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Streptococcus parasanguinis FW213
Macromolecule	Putative glycosyltransferase (GalT1) (protein)
Unique Ligands	ACT, MN, UDP

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4PHS \| pdb_00004phs	Download File View File

Selenomethionine substituted structure of domain of unknown function 1792 (DUF1792)

Zhang, H., Wu, H.

(2014) Nat Commun 5: 4339-4339

Released	2014-08-06
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Streptococcus parasanguinis FW213
Macromolecule	Putative glycosyltransferase (GalT1) (protein)
Unique Ligands	UDP