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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Expression Organism = "Escherichia coli BL21(DE3)"

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Search Summary

This query matches 53,192 Structures.

Refinements

Structure Determination Methodology

experimental (53,192)

Scientific Name of Source Organism

	Homo sapiens (14,515)
	synthetic construct (2,192)
	Mus musculus (1,478)
	Escherichia coli K-12 (1,441)
	Escherichia coli (1,437)
	Rattus norvegicus (947)
	Severe acute respiratory syndrome coronavirus 2 (932)
	Mycobacterium tuberculosis H37Rv (889)
	Saccharomyces cerevisiae (646)
	Arabidopsis thaliana (586)

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Taxonomy

	Bacteria (24,239)
	Eukaryota (24,226)
	Riboviria (3,033)
	other sequences (2,204)
	Archaea (1,506)
	Duplodnaviria (645)
	Varidnaviria (245)
	Eukaryota (eukaryotes) (221)
	Monodnaviria (146)
	unclassified sequences (145)

More...

Experimental Method

	X-RAY DIFFRACTION (48,695)
	SOLUTION NMR (2,244)
	ELECTRON MICROSCOPY (2,193)
	SOLID-STATE NMR (42)
	NEUTRON DIFFRACTION (32)
	ELECTRON CRYSTALLOGRAPHY (11)
	SOLUTION SCATTERING (7)
	EPR (3)

Polymer Entity Type

	Protein (53,191)
	DNA (2,406)
	RNA (1,082)
	NA-hybrid (47)

Refinement Resolution (Å)

	0.5 - 1.0 (270)
	1.0 - 1.5 (5,452)
	1.5 - 2.0 (17,577)
	2.0 - 2.5 (15,289)
	2.5 - 3.0 (7,807)
	3.0 - 3.5 (2,888)
	3.5 - 4.0 (903)
	4.0 - 4.5 (311)
	> 4.5 (422)

Release Date

	1995 - 1999 (576)
	2000 - 2004 (2,849)
	2005 - 2009 (6,473)
	2010 - 2014 (11,491)
	2015 - 2019 (14,523)
	2020 - 2024 (16,429)
	2025 - 2029 (851)

Enzyme Classification Name

	Transferases (10,591)
	Hydrolases (10,949)
	Oxidoreductases (5,531)
	Lyases (2,458)
	Isomerases (1,442)
	Ligases (1,254)
	Translocases (157)

Membrane Protein Annotation

	PDBTM (798)
	mpstruc (630)
	OPM (696)
	MemProtMD (643)

Symmetry Type

	Asymmetric (31,254)
	Cyclic (18,713)
	Dihedral (4,811)
	Tetrahedral (179)
	Helical (170)
	Octahedral (164)
	Icosahedral (113)

SCOP Classification

	Alpha and beta proteins (a/b) (8,675)
	Alpha and beta proteins (a+b) (6,921)
	All beta proteins (5,078)
	Artifacts (5,318)
	All alpha proteins (4,098)
	Multi-domain proteins (alpha and beta) (753)
	Small proteins (394)
	Membrane and cell surface proteins and peptides (250)
	Coiled coil proteins (93)
	Peptides (48)

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AllSelected

1 to 25 of 53,192 Structures

Page 1 of 2,128

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1A02 \| pdb_00001a02	Download File View File

STRUCTURE OF THE DNA BINDING DOMAINS OF NFAT, FOS AND JUN BOUND TO DNA

Chen, L., Glover, J.N.M., Hogan, P.G., Rao, A., Harrison, S.C.

(1998) Nature 392: 42-48

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	AP-1 FRAGMENT FOS (protein) AP-1 FRAGMENT JUN (protein) NUCLEAR FACTOR OF ACTIVATED T CELLS (protein) DNA (5'-D(DAPDAPDCPDTPDAPDTPDGPDAPDAPDAPDCPDAPDAPDAPDTPDTPDTPDTPDCPDC)-3') (nucleic acid) DNA (5'-D(DTPDTPDGPDGPDAPDAPDAPDAPDTPDTPDTPDGPDTPDTPDTPDCPDAPDTPDAPDG)-3') (nucleic acid)

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1A0A \| pdb_00001a0a	Download File View File

PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4/DNA COMPLEX

Shimizu, T., Toumoto, A., Ihara, K., Shimizu, M., Kyogoku, Y., Ogawa, N., Oshima, Y., Hakoshima, T.

(1997) EMBO J 16: 4689-4697

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (PHOSPHATE SYSTEM POSITIVE REGULATORY PROTEIN PHO4) (protein) DNA (5'-D(CPTPAPGPTPCPCPCPAPCPGPTPGPTPGPAPG )-3') (nucleic acid) DNA (5'-D(CPTPCPAPCPAPCPGPTPGPGPGPAPCPTPAPG )-3') (nucleic acid)

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1A0K \| pdb_00001a0k	Download File View File

PROFILIN I FROM ARABIDOPSIS THALIANA

Shigeta Junior, R., Huddler, D., Lindberg, U., Schutt, C.E.

(1997) Structure 5: 19-32

Released	1998-03-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Arabidopsis thaliana
Macromolecule	PROFILIN (protein)

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1A0N \| pdb_00001a0n	Download File View File

NMR STUDY OF THE SH3 DOMAIN FROM FYN PROTO-ONCOGENE TYROSINE KINASE COMPLEXED WITH THE SYNTHETIC PEPTIDE P2L CORRESPONDING TO RESIDUES 91-104 OF THE P85 SUBUNIT OF PI3-KINASE, FAMILY OF 25 STRUCTURES

Renzoni, D.A., Pugh, D.J.R., Siligardi, G., Das, P., Morton, C.J., Rossi, C., Waterfield, M.D., Campbell, I.D., Ladbury, J.E.

(1996) Biochemistry 35: 15646-15653

Released	1998-02-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	FYN (protein) PRO-PRO-ARG-PRO-LEU-PRO-VAL-ALA-PRO-GLY-SER-SER-LYS-THR (protein)

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1A1F \| pdb_00001a1f	Download File View File

DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus
Macromolecule	THREE-FINGER ZIF268 PEPTIDE (protein) DNA (5'-D(APGPCPGPTPGPGPGPAPCPC)-3') (nucleic acid) DNA (5'-D(TPGPGPTPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1G \| pdb_00001a1g	Download File View File

DSNR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	DSNR ZINC FINGER PEPTIDE (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPGPT)-3') (nucleic acid) DNA (5'-D(TPAPCPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1H \| pdb_00001a1h	Download File View File

QGSR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	QGSR ZINC FINGER PEPTIDE (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPAPC)-3') (nucleic acid) DNA (5'-D(TPGPTPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1I \| pdb_00001a1i	Download File View File

RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCAC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mus musculus
Macromolecule	RADR ZIF268 ZINC FINGER PEPTIDE (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPAPC)-3') (nucleic acid) DNA (5'-D(TPGPTPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1J \| pdb_00001a1j	Download File View File

RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GCGT SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (RADR ZIF268 ZINC FINGER PEPTIDE) (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPGPT)-3') (nucleic acid) DNA (5'-D(TPAPCPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1K \| pdb_00001a1k	Download File View File

RADR (ZIF268 VARIANT) ZINC FINGER-DNA COMPLEX (GACC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mus musculus
Macromolecule	RADR ZIF268 VARIANT (protein) DNA (5'-D(APGPCPGPTPGPGPGPAPCPC)-3') (nucleic acid) DNA (5'-D(TPGPGPTPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A1L \| pdb_00001a1l	Download File View File

ZIF268 ZINC FINGER-DNA COMPLEX (GCAC SITE)

Elrod-Erickson, M., Benson, T.E., Pabo, C.O.

(1998) Structure 6: 451-464

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (ZIF268 ZINC FINGER PEPTIDE) (protein) DNA (5'-D(APGPCPGPTPGPGPGPCPAPC)-3') (nucleic acid) DNA (5'-D(TPGPTPGPCPCPCPAPCPGPC)-3') (nucleic acid)
Unique Ligands	ZN

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1A25 \| pdb_00001a25	Download File View File

C2 DOMAIN FROM PROTEIN KINASE C (BETA)

Sutton, R.B., Sprang, S.R.

(1998) Structure 6: 1395-1405

Released	1998-05-06
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Rattus norvegicus
Macromolecule	PROTEIN KINASE C (BETA) (protein)
Unique Ligands	CA, PSE

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1A2F \| pdb_00001a2f	Download File View File

PROBING THE STRENGTH AND CHARACTER OF AN ASP-HIS-X HYDROGEN BOND BY INTRODUCING BURIED CHARGES

Cao, Y., Goodin, D.B., Mcree, D.E.

To be published

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM

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1A2G \| pdb_00001a2g	Download File View File

PROBING THE STRENGTH AND CHARACTER OF AN ASP-HIS-X HYDROGEN BOND BY INTRODUCING BURIED CHARGES

Cao, Y., Goodin, D.B., Mcree, D.E.

To be published

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C PEROXIDASE (protein)
Unique Ligands	HEM

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1A32 \| pdb_00001a32	Download File View File

RIBOSOMAL PROTEIN S15 FROM BACILLUS STEAROTHERMOPHILUS

Clemons Junior, W.M., Davies, C., White, S.W., Ramakrishnan, V.

(1998) Structure 6: 429-438

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	RIBOSOMAL PROTEIN S15 (protein)

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1A3Q \| pdb_00001a3q	Download File View File

HUMAN NF-KAPPA-B P52 BOUND TO DNA

Cramer, P., Larson, C.J., Verdine, G.L., Muller, C.W.

(1997) EMBO J 16: 7078-7090

Released	1998-06-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (NUCLEAR FACTOR KAPPA-B P52) (protein) DNA (5'-D(GPGPGPGPAPAPTPCPCPCPC)-3') (nucleic acid) DNA (5'-D(GPGPGPGPAPTPTPCPCPCPC)-3') (nucleic acid)

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1A43 \| pdb_00001a43	Download File View File

STRUCTURE OF THE HIV-1 CAPSID PROTEIN DIMERIZATION DOMAIN AT 2.6A RESOLUTION

Worthylake, D.K., Wang, H., Yoo, S., Sundquist, W.I., Hill, C.P.

(1999) Acta Crystallogr D Biol Crystallogr 55: 85-92

Released	1999-02-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 CAPSID (protein)

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1A4R \| pdb_00001a4r	Download File View File

G12V MUTANT OF HUMAN PLACENTAL CDC42 GTPASE IN THE GDP FORM

Rudolph, M.G., Vetter, I.R., Wittinghofer, A.

(1999) Protein Sci 8: 778-787

Released	1999-03-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	G25K GTP-BINDING PROTEIN (protein)
Unique Ligands	GDP, GNH, MG

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1A5E \| pdb_00001a5e	Download File View File

SOLUTION NMR STRUCTURE OF TUMOR SUPPRESSOR P16INK4A, 18 STRUCTURES

Byeon, I.-J.L., Li, J., Ericson, K., Selby, T.L., Tevelev, A., Kim, H.-J., O'Maille, P., Tsai, M.-D.

(1998) Mol Cell 1: 421-431

Released	1999-08-13
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	TUMOR SUPPRESSOR P16INK4A (protein)

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1A5Q \| pdb_00001a5q	Download File View File

P93A VARIANT OF BOVINE PANCREATIC RIBONUCLEASE A

Pearson, M.A., Karplus, P.A., Dodge, R.W., Laity, J.H., Scheraga, H.A.

(1998) Protein Sci 7: 1255-1258

Released	1998-05-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Bos taurus
Macromolecule	RIBONUCLEASE A (protein)
Unique Ligands	SO4

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1A62 \| pdb_00001a62	Download File View File

CRYSTAL STRUCTURE OF THE RNA-BINDING DOMAIN OF THE TRANSCRIPTIONAL TERMINATOR PROTEIN RHO

Allison, T.J., Wood, T.C., Briercheck, D.M., Rastinejad, F., Richardson, J.P., Rule, G.S.

(1998) Nat Struct Biol 5: 352-356

Released	1998-06-17
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Escherichia coli BL21(DE3)
Macromolecule	RHO (protein)

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1A63 \| pdb_00001a63	Download File View File

THE NMR STRUCTURE OF THE RNA BINDING DOMAIN OF E.COLI RHO FACTOR SUGGESTS POSSIBLE RNA-PROTEIN INTERACTIONS, 10 STRUCTURES

Briercheck, D.M., Wood, T.C., Allison, T.J., Richardson, J.P., Rule, G.S.

(1998) Nat Struct Biol 5: 393-399

Released	1998-05-27
Method	SOLUTION NMR
Organisms	Escherichia coli BL21(DE3)
Macromolecule	RHO (protein)

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1A66 \| pdb_00001a66	Download File View File

SOLUTION NMR STRUCTURE OF THE CORE NFATC1/DNA COMPLEX, 18 STRUCTURES

Zhou, P., Sun, L.J., Doetsch, V., Wagner, G., Verdine, G.L.

(1998) Cell 92: 687-696

Released	1998-06-17
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CORE NFATC1 (protein) DNA (5'-D(CPAPAPTPTPTPTPCPCPTPCPG)-3') (nucleic acid) DNA (5'-D(CPGPAPGPGPAPAPAPAPTPTPG)-3') (nucleic acid)