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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Expression Organism = "Komagataella pastoris"

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Search Summary

This query matches 2,085 Structures.

Refinements

Structure Determination Methodology

experimental (2,085)

Scientific Name of Source Organism

	Homo sapiens (878)
	Mus musculus (161)
	Phanerodontia chrysosporium (49)
	Bos taurus (38)
	Hordeum vulgare subsp. vulgare (32)
	Paradendryphiella salina (32)
	Rattus norvegicus (31)
	Gallus gallus (29)
	Arabidopsis thaliana (27)
	synthetic construct (27)

More...

Taxonomy

	Eukaryota (2,044)
	Bacteria (53)
	other sequences (32)
	Riboviria (16)
	Varidnaviria (12)
	Duplodnaviria (5)
	Eukaryota (eukaryotes) (3)
	Archaea (2)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (1,795)
	ELECTRON MICROSCOPY (154)
	SOLUTION NMR (126)
	NEUTRON DIFFRACTION (13)
	SOLUTION SCATTERING (5)
	SOLID-STATE NMR (1)

Polymer Entity Type

	Protein (2,085)
	DNA (1)
	RNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (32)
	1.0 - 1.5 (195)
	1.5 - 2.0 (629)
	2.0 - 2.5 (516)
	2.5 - 3.0 (297)
	3.0 - 3.5 (197)
	3.5 - 4.0 (60)
	4.0 - 4.5 (21)
	> 4.5 (15)

Release Date

	1995 - 1999 (55)
	2000 - 2004 (177)
	2005 - 2009 (390)
	2010 - 2014 (392)
	2015 - 2019 (408)
	2020 - 2024 (631)
	2025 - 2029 (32)

Enzyme Classification Name

	Hydrolases (849)
	Oxidoreductases (180)
	Transferases (166)
	Lyases (87)
	Translocases (46)
	Isomerases (13)

Membrane Protein Annotation

	PDBTM (338)
	MemProtMD (183)
	mpstruc (224)
	OPM (200)

Symmetry Type

	Asymmetric (1,493)
	Cyclic (598)
	Dihedral (41)
	Icosahedral (10)
	Helical (3)
	Tetrahedral (3)

SCOP Classification

	All beta proteins (406)
	Alpha and beta proteins (a/b) (324)
	Alpha and beta proteins (a+b) (206)
	Artifacts (160)
	Small proteins (135)
	All alpha proteins (111)
	Membrane and cell surface proteins and peptides (18)
	Low resolution protein structures (1)
	Coiled coil proteins (1)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 2,085 Structures

Page 1 of 84

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1ALY \| pdb_00001aly	Download File View File

CRYSTAL STRUCTURE OF HUMAN CD40 LIGAND

Karpusas, M., Hsu, Y.M., Thomas, D.

(1995) Structure 3: 1031-1039

Released	1997-09-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	CD40 LIGAND (protein)

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1AV5 \| pdb_00001av5	Download File View File

PKCI-SUBSTRATE ANALOG

Lima, C.D., Klein, M.G., Hendrickson, W.A.

(1997) Science 278: 286-290

Released	1998-03-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN KINASE C INTERACTING PROTEIN (protein)
Unique Ligands	AP2

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1AYE \| pdb_00001aye	Download File View File

HUMAN PROCARBOXYPEPTIDASE A2

Garcia-Saez, I., Reverte, D., Vendrell, J., Aviles, F.X., Coll, M.

(1997) EMBO J 16: 6906-6913

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	PROCARBOXYPEPTIDASE A2 (protein)
Unique Ligands	ZN

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1B08 \| pdb_00001b08	Download File View File

LUNG SURFACTANT PROTEIN D (SP-D) (FRAGMENT)

Hakansson, K., Lim, N.K., Hoppe, H.-J., Reid, K.B.M.

(1999) Structure 7: 255-264

Released	1999-12-01
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (LUNG SURFACTANT PROTEIN D) (protein)
Unique Ligands	CA

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1B3E \| pdb_00001b3e	Download File View File

HUMAN SERUM TRANSFERRIN, N-TERMINAL LOBE, EXPRESSED IN PICHIA PASTORIS

Bewley, M.C., Tam, B.M., Grewal, J., He, S., Shewry, S., Murphy, M.E.P., Mason, A.B., Woodworth, R.C., Baker, E.N., Macgillivray, R.T.A.

(1999) Biochemistry 38: 2535-2541

Released	1999-03-26
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (SERUM TRANSFERRIN) (protein)
Unique Ligands	CO3, FE

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1B50 \| pdb_00001b50	Download File View File

NMR STRUCTURE OF HUMAN MIP-1A D26A, 10 STRUCTURES

Waltho, J.P., Higgins, L.D., Craven, C.J., Tan, P., Dudgeon, T.

(1999) J Biological Chem 274: 16077-16084

Released	1999-07-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	MIP-1A (protein)

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1B53 \| pdb_00001b53	Download File View File

NMR STRUCTURE OF HUMAN MIP-1A D26A, MINIMIZED AVERAGE STRUCTURE

Waltho, J.P., Higgins, L.D., Craven, C.J., Tan, P., Dudgeon, T.

(1999) J Biological Chem 274: 16077-16084

Released	1999-07-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	MIP-1A (protein)

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1B5L \| pdb_00001b5l	Download File View File

OVINE INTERFERON TAU

Radhakrishnan, R., Walter, L.J., Subramaniam, P.S., Johnson, H.J., Walter, M.R.

(1999) J Mol Biology 286: 151-162

Released	1999-05-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Komagataella pastoris
Macromolecule	INTERFERON TAU (protein)
Unique Ligands	SO4

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1BB3 \| pdb_00001bb3	Download File View File

HUMAN LYSOZYME MUTANT A96L

Headley, A.G., Roe, S.M., Pearl, L.H.

Released	1998-08-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME (protein)

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1BB4 \| pdb_00001bb4	Download File View File

HUMAN LYSOZYME DOUBLE MUTANT A96L, W109H

Headley, A.G., Roe, S.M., Pearl, L.H.

Released	1998-08-12
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME (protein)

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1BB5 \| pdb_00001bb5	Download File View File

HUMAN LYSOZYME MUTANT A96L COMPLEXED WITH CHITOTRIOSE

Headley, A.G., Roe, S.M., Pearl, L.H.

Released	1998-08-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME (protein)
Unique branched monosaccharides	NAG

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1BJ7 \| pdb_00001bj7	Download File View File

BOVINE LIPOCALIN ALLERGEN BOS D 2

Rouvinen, J.

(1999) J Biological Chem 274: 2337-2343

Released	1999-05-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus
Macromolecule	D 2 (protein)

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1BM0 \| pdb_00001bm0	Download File View File

CRYSTAL STRUCTURE OF HUMAN SERUM ALBUMIN

Sugio, S., Kashima, A., Mochizuki, S., Noda, M., Kobayashi, K.

(1999) Protein Eng 12: 439-446

Released	1999-07-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	SERUM ALBUMIN (protein)

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1BSI \| pdb_00001bsi	Download File View File

HUMAN PANCREATIC ALPHA-AMYLASE FROM PICHIA PASTORIS, GLYCOSYLATED PROTEIN

Rydberg, E.H., Sidhu, G., Vo, H.C., Hewitt, J., Cote, H.C.F., Wang, Y., Numao, S., Macgillivray, R.T.A., Overall, C.M., Brayer, G.D., Withers, S.G.

(1999) Protein Sci 8: 635-643

Released	1999-05-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	ALPHA-AMYLASE (protein)
Unique Ligands	CA, CL, NAG

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1BTE \| pdb_00001bte	Download File View File

CRYSTAL STRUCTURE OF THE EXTRACELLULAR DOMAIN OF THE TYPE II ACTIVIN RECEPTOR

Greenwald, J., Fischer, W., Vale, W., Choe, S.

(1999) Nat Struct Biol 6: 18-22

Released	1999-02-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Mus musculus
Macromolecule	PROTEIN (ACTIVIN RECEPTOR TYPE II) (protein)
Unique Ligands	NAG

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1BXM \| pdb_00001bxm	Download File View File

ENGINEERED BETA-CRYPTOGEIN COMPLEXED WITH ERGOSTEROL

Boissy, G., Brunie, S.

(1999) Protein Sci 8: 1191-1199

Released	1999-06-15
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Phytophthora cryptogea
Macromolecule	BETA-CRYPTOGEIN (protein)
Unique Ligands	ERG

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1C5W \| pdb_00001c5w	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) (protein)
Unique Ligands	ESI, FLC

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1C5X \| pdb_00001c5x	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) (protein)
Unique Ligands	ESI, FLC

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1C5Y \| pdb_00001c5y	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) (protein)
Unique Ligands	ESP, FLC

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1C5Z \| pdb_00001c5z	Download File View File

STRUCTURAL BASIS FOR SELECTIVITY OF A SMALL MOLECULE, S1-BINDING, SUB-MICROMOLAR INHIBITOR OF UROKINASE TYPE PLASMINOGEN ACTIVATOR

Katz, B.A., Mackman, R., Luong, C., Radika, K., Martelli, A., Sprengeler, P.A., Wang, J., Chan, H., Wong, L.

(2000) Chem Biol 7: 299-312

Released	2000-12-22
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (UROKINASE-TYPE PLASMINOGEN ACTIVATOR) (protein)
Unique Ligands	BEN, FLC

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1C7P \| pdb_00001c7p	Download File View File

CRYSTAL STRUCTURE OF MUTANT HUMAN LYSOZYME WITH FOUR EXTRA RESIDUES (EAEA) AT THE N-TERMINAL

Goda, S., Takano, K., Yamagata, Y., Katakura, Y., Yutani, K.

(2000) Protein Eng 13: 299-307

Released	2000-04-05
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	LYSOZYME (protein)
Unique Ligands	NA

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1CEJ \| pdb_00001cej	Download File View File

SOLUTION STRUCTURE OF AN EGF MODULE PAIR FROM THE PLASMODIUM FALCIPARUM MEROZOITE SURFACE PROTEIN 1

Morgan, W.D., Birdsall, B., Frenkiel, T.A., Gradwell, M.G., Burghaus, P.A., Syed, S.E.H., Uthaipibull, C., Holder, A.A., Feeney, J.

(1999) J Mol Biology 289: 113-122

Released	1999-05-28
Method	SOLUTION NMR
Organisms	Plasmodium falciparum
Macromolecule	PROTEIN (MEROZOITE SURFACE PROTEIN 1) (protein)

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1CJ5 \| pdb_00001cj5	Download File View File

BOVINE BETA-LACTOGLOBULIN A

Kuwata, K., Hoshino, M., Forge, V., Era, S., Batt, C.A., Goto, Y.

(1999) Protein Sci 8: 2541-2545

Released	2000-04-26
Method	SOLUTION NMR
Organisms	Bos taurus
Macromolecule	BETA-LACTOGLOBULIN A (protein)

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1CJL \| pdb_00001cjl	Download File View File

CRYSTAL STRUCTURE OF A CYSTEINE PROTEASE PROFORM

Coulombe, R., Grochulski, P., Sivaraman, J., Cygler, M.

(1996) EMBO J 15: 5492-5503

Released	1997-08-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	PROCATHEPSIN L (protein)

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1CN4 \| pdb_00001cn4	Download File View File

ERYTHROPOIETIN COMPLEXED WITH EXTRACELLULAR DOMAINS OF ERYTHROPOIETIN RECEPTOR

Stroud, R.M., Reid, S.W.

(1998) Nature 395: 511-516

Released	1999-08-11
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (ERYTHROPOIETIN RECEPTOR) (protein) PROTEIN (ERYTHROPOIETIN) (protein)

1 to 25 of 2,085 Structures

Page 1 of 84

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ALY | pdb_00001aly

1AV5 | pdb_00001av5

1AYE | pdb_00001aye

1B08 | pdb_00001b08

1B3E | pdb_00001b3e

1B50 | pdb_00001b50

1B53 | pdb_00001b53

1B5L | pdb_00001b5l

1BB3 | pdb_00001bb3

1BB4 | pdb_00001bb4

1BB5 | pdb_00001bb5

1BJ7 | pdb_00001bj7

1BM0 | pdb_00001bm0

1BSI | pdb_00001bsi

1BTE | pdb_00001bte

1BXM | pdb_00001bxm

1C5W | pdb_00001c5w

1C5X | pdb_00001c5x

1C5Y | pdb_00001c5y

1C5Z | pdb_00001c5z

1C7P | pdb_00001c7p

1CEJ | pdb_00001cej

1CJ5 | pdb_00001cj5

1CJL | pdb_00001cjl

1CN4 | pdb_00001cn4