RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Expression Organism = "Saccharomyces cerevisiae S288C"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 176 Structures.

Refinements

Structure Determination Methodology

experimental (176)

Scientific Name of Source Organism

	Saccharomyces cerevisiae S288C (169)
	Homo sapiens (49)
	synthetic construct (22)
	Kluyveromyces lactis (8)
	Kluyveromyces lactis NRRL Y-1140 (8)
	Mus musculus (8)
	Saccharomyces cerevisiae (4)
	Thermochaetoides thermophila DSM 1495 (3)
	Candida albicans SC5314 (2)
	Klebsiella pneumoniae (1)

More...

Taxonomy

	Eukaryota (176)
	other sequences (22)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (111)
	ELECTRON MICROSCOPY (65)

Polymer Entity Type

	Protein (176)
	RNA (21)
	DNA (17)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (105)
	3.0 - 3.5 (28)
	3.5 - 4.0 (20)
	4.0 - 4.5 (11)
	> 4.5 (7)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (116)
	2020 - 2024 (52)
	2025 - 2029 (7)

Enzyme Classification Name

	Hydrolases (120)
	Transferases (22)
	Translocases (19)
	Oxidoreductases (3)
	Isomerases (4)

Membrane Protein Annotation

	PDBTM (25)
	OPM (21)
	mpstruc (15)
	MemProtMD (20)

Symmetry Type

	Cyclic (111)
	Asymmetric (64)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (84)
	Artifacts (83)
	Membrane and cell surface proteins and peptides (1)
	All alpha proteins (1)
	All beta proteins (1)

AllSelected

1 to 25 of 176 Structures

Page 1 of 8

Sort by

Explore in 3D

3W3X \| pdb_00003w3x	Download File View File

Crystal structure of Kap121p bound to Pho4p

Kobayashi, J., Matsuura, Y.

(2013) J Mol Biology 425: 1852-1868

Released	2013-04-10
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae Saccharomyces cerevisiae S288C
Macromolecule	Importin subunit beta-3 (protein) Phosphate system positive regulatory protein PHO4 (protein)

Explore in 3D

4QW1 \| pdb_00004qw1	Download File View File

yCP beta5-A50V mutant in complex with bortezomib

Huber, E.M., Heinemeyer, W., Groll, M.

(2015) Structure 23: 407-417

Released	2015-02-04
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	BO2, CL, MG

Explore in 3D

4QZ2 \| pdb_00004qz2	Download File View File

yCP beta5-M45I mutant in complex with the epoxyketone inhibitor ONX 0914

Huber, E.M., Heinemeyer, W., Groll, M.

(2015) Structure 23: 407-417

Released	2015-02-04
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	04C, CL, MES, MG

Explore in 3D

4Y8M \| pdb_00004y8m	Download File View File

Yeast 20S proteasome beta7-delta7_Cter mutant

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	CL, MG

Explore in 3D

4Y8O \| pdb_00004y8o	Download File View File

Yeast 20S proteasome beta7-delta7_Cter mutant in complex with Ac-PAF-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MES, MG

Explore in 3D

4Y8P \| pdb_00004y8p	Download File View File

Yeast 20S proteasome beta7-delta7_Cter mutant in complex with Ac-PAL-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MES, MG

Explore in 3D

4Y8Q \| pdb_00004y8q	Download File View File

Yeast 20S proteasome beta7-delta7_Cter mutant in complex with Ac-PAY-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MES, MG

Explore in 3D

4Y8R \| pdb_00004y8r	Download File View File

Yeast 20S proteasome beta2-H116D mutant

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	CL, MES, MG

Explore in 3D

4Y8S \| pdb_00004y8s	Download File View File

Yeast 20S proteasome beta2-H116D mutant in complex with Ac-LAE-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	MES, MG

Explore in 3D

4Y8T \| pdb_00004y8t	Download File View File

Yeast 20S proteasome beta2-H116D mutant in complex with Ac-PAE-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	MG

Explore in 3D

4Y8U \| pdb_00004y8u	Download File View File

Yeast 20S proteasome beta2-H116D mutant in complex with Ac-PAD-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MG

Explore in 3D

4Y9Y \| pdb_00004y9y	Download File View File

Yeast 20S proteasome beta2-H116E mutant

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	MES, MG

Explore in 3D

4Y9Z \| pdb_00004y9z	Download File View File

Yeast 20S proteasome beta2-H116E mutant in complex with Ac-LAE-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MES, MG

Explore in 3D

4YA0 \| pdb_00004ya0	Download File View File

Yeast 20S proteasome beta2-H116E mutant in complex with Ac-PAE-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MG

Explore in 3D

4YA1 \| pdb_00004ya1	Download File View File

Yeast 20S proteasome beta2-H116N mutant

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	CL, MG

Explore in 3D

4YA2 \| pdb_00004ya2	Download File View File

Yeast 20S proteasome beta2-H116N mutant in complex with Ac-LAE-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MES, MG

Explore in 3D

4YA4 \| pdb_00004ya4	Download File View File

Yeast 20S proteasome beta2-H114D mutant

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	CL, MG

Explore in 3D

4YA5 \| pdb_00004ya5	Download File View File

Yeast 20S proteasome beta2-H114D mutant in complex with Ac-PAE-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MG

Explore in 3D

4YA7 \| pdb_00004ya7	Download File View File

Yeast 20S proteasome beta2-H114D mutant in complex with Ac-LAE-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MES, MG

Explore in 3D

4YA9 \| pdb_00004ya9	Download File View File

Yeast 20S proteasome beta2-H114D mutant in complex with Ac-LAD-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, K, MES, MG

Explore in 3D

5BXN \| pdb_00005bxn	Download File View File

Yeast 20S proteasome beta2-G170A mutant in complex with Bortezomib

Huber, E.M., Groll, M.

(2018) Sci Rep 8: 5975-5975

Released	2016-06-15
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	BO2, CL, MG

Explore in 3D

5CGF \| pdb_00005cgf	Download File View File

Yeast 20S proteasome beta5-G48C mutant

Dubiella, C., Groll, M.

(2015) Angew Chem Int Ed Engl 54: 15888-15891

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	CL, MG

Explore in 3D

5CGG \| pdb_00005cgg	Download File View File

Yeast 20S proteasome beta5-G48C mutant in complex with alpha-chloroacetamide 1

Dubiella, C., Groll, M.

(2015) Angew Chem Int Ed Engl 54: 15888-15891

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MES, MG

Explore in 3D

5CZ5 \| pdb_00005cz5	Download File View File

Yeast 20S proteasome beta1-T1A mutant in complex with Carfilzomib

Huber, E.M., Groll, M.

(2016) Nat Commun 7: 10900-10900

Released	2016-03-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	3BV, CL, MES, MG

Explore in 3D

5CZ6 \| pdb_00005cz6	Download File View File

Yeast 20S proteasome beta5-T1A mutant in complex with Syringolin A, propeptide expressed in trans

Huber, E.M., Groll, M.

(2016) Nat Commun 7: 10900-10900

Released	2016-03-23
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Unique protein chains: 14
Unique Ligands	CL, MG, SRG

1 to 25 of 176 Structures

Page 1 of 8

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

3W3X | pdb_00003w3x

4QW1 | pdb_00004qw1

4QZ2 | pdb_00004qz2

4Y8M | pdb_00004y8m

4Y8O | pdb_00004y8o

4Y8P | pdb_00004y8p

4Y8Q | pdb_00004y8q

4Y8R | pdb_00004y8r

4Y8S | pdb_00004y8s

4Y8T | pdb_00004y8t

4Y8U | pdb_00004y8u

4Y9Y | pdb_00004y9y

4Y9Z | pdb_00004y9z

4YA0 | pdb_00004ya0

4YA1 | pdb_00004ya1

4YA2 | pdb_00004ya2

4YA4 | pdb_00004ya4

4YA5 | pdb_00004ya5

4YA7 | pdb_00004ya7

4YA9 | pdb_00004ya9

5BXN | pdb_00005bxn

5CGF | pdb_00005cgf

5CGG | pdb_00005cgg

5CZ5 | pdb_00005cz5

5CZ6 | pdb_00005cz6