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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Common Name (Entity Source Organism) = "HIV-1"

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Search Summary

This query matches 1,081 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (1,081)

Scientific Name of Source Organism

	Human immunodeficiency virus 1 (455)
	Human immunodeficiency virus type 1 BH10 (258)
	HIV-1 M:B_HXB2R (132)
	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE) (76)
	Human immunodeficiency virus type 1 (BRU ISOLATE) (69)
	HIV-1 M:B_ARV2/SF2 (48)
	Human immunodeficiency virus type 1 lw12.3 isolate (8)
	Human immunodeficiency virus (7)
	Homo sapiens (5)
	Human immunodeficiency virus type 1 (Z2/CDC-Z34 ISOLATE) (5)

More...

Taxonomy

	Riboviria (1,081)
	Eukaryota (7)
	Bacteria (4)
	Archaea (1)

Experimental Method

	X-RAY DIFFRACTION (889)
	ELECTRON MICROSCOPY (164)
	SOLUTION NMR (26)
	SOLUTION SCATTERING (4)
	NEUTRON DIFFRACTION (2)
	SOLID-STATE NMR (2)

Polymer Entity Type

	Protein (1,067)
	RNA (11)
	DNA (3)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (69)
	1.5 - 2.0 (267)
	2.0 - 2.5 (168)
	2.5 - 3.0 (277)
	3.0 - 3.5 (125)
	3.5 - 4.0 (64)
	4.0 - 4.5 (35)
	> 4.5 (46)

Release Date

	1995 - 1999 (5)
	2000 - 2004 (12)
	2005 - 2009 (97)
	2010 - 2014 (381)
	2015 - 2019 (268)
	2020 - 2024 (315)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (353)
	Hydrolases (405)

Membrane Protein Annotation

	OPM (5)
	MemProtMD (2)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (652)
	Cyclic (454)
	Dihedral (2)
	Icosahedral (2)
	Tetrahedral (2)

SCOP Classification

	All beta proteins (154)
	Multi-domain proteins (alpha and beta) (214)
	Alpha and beta proteins (a/b) (145)
	All alpha proteins (42)
	Artifacts (56)
	Alpha and beta proteins (a+b) (8)
	Coiled coil proteins (4)
	Small proteins (5)
	Peptides (2)

AllSelected

1 to 25 of 1,081 Polymer Entities

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1E27: Entity 3	Download File View File

Nonstandard peptide binding of HLA-B*5101 complexed with HIV immunodominant epitope KM1(LPPVVAKEI)

Maenaka, K., Maenaka, T., Tomiyama, H., Takiguchi, M., Stuart, D.I., Jones, E.Y.

(2000) J Immunol 165: 3260-3267

Released	2000-09-12
Method	X-RAY DIFFRACTION 2.2 Å
Chain ID	C
Organism	Human immunodeficiency virus 1
Macromolecule	HIV-1 PEPTIDE (LPPVVAKEI)

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1E28: Entity 3	Download File View File

Nonstandard peptide binding of HLA-B*5101 complexed with HIV immunodominant epitope KM2(TAFTIPSI)

Maenaka, K., Maenaka, T., Tomiyama, H., Takiguchi, M., Stuart, D.I., Jones, E.Y.

(2000) J Immunol 165: 3260-3267

Released	2000-09-12
Method	X-RAY DIFFRACTION 3 Å
Chain ID	C
Organism	Human immunodeficiency virus 1
Macromolecule	PEPTIDE

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1ENV: Entity 1	Download File View File

ATOMIC STRUCTURE OF THE ECTODOMAIN FROM HIV-1 GP41

Weissenhorn, W., Dessen, A., Harrison, S.C., Skehel, J.J., Wiley, D.C.

(1997) Nature 387: 426-430

Released	1997-11-19
Method	X-RAY DIFFRACTION 2.6 Å
Chain ID	A
Organism	Human immunodeficiency virus 1 Saccharomyces cerevisiae
Macromolecule	HIV-1 ENVELOPE PROTEIN CHIMERA CONSISTING OF A FRAGMENT OF GCN4 ZIPPER CLONED N-TERMINAL TO TWO FRAGMENTS OF GP41

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1GZL: Entity 1	Download File View File

Crystal structure of C14linkmid/IQN17: a cross-linked inhibitor of HIV-1 entry bound to the gp41 hydrophobic pocket

Sia, S.K., Carr, P.A., Cochran, A.G., Malashkevich, V.M., Kim, P.S.

(2002) Proc Natl Acad Sci U S A 99: 14664

Released	2002-10-10
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B
Organism	Human immunodeficiency virus 1 Saccharomyces cerevisiae
Macromolecule	FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF HIV GP41 AND GENERAL CONTROL PROTEIN GCN4-PIQI

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1GZL: Entity 2	Download File View File

Crystal structure of C14linkmid/IQN17: a cross-linked inhibitor of HIV-1 entry bound to the gp41 hydrophobic pocket

Sia, S.K., Carr, P.A., Cochran, A.G., Malashkevich, V.M., Kim, P.S.

(2002) Proc Natl Acad Sci U S A 99: 14664

Released	2002-10-10
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	D, C
Organism	Human immunodeficiency virus
Macromolecule	ENVELOPE GLYCOPROTEIN GP41

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1K5M: Entity 2	Download File View File

Crystal Structure of a Human Rhinovirus Type 14:Human Immunodeficiency Virus Type 1 V3 Loop Chimeric Virus MN-III-2

Ding, J., Smith, A.D., Geisler, S.C., Ma, X., Arnold, G.F., Arnold, E.

(2002) Structure 10: 999-1011

Released	2002-07-17
Method	X-RAY DIFFRACTION 2.7 Å
Chain ID	B
Organism	HIV-1 M:B_MN rhinovirus B14
Macromolecule	CHIMERA OF HRV14 COAT PROTEIN VP2 (P1B) AND the V3 loop of HIV-1 gp120

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1ODW: Entity 1	Download File View File

Native HIV-1 Proteinase

Thanki, N., Kervinen, J., Wlodawer, A.

(1996) Protein Pept Lett 3: 399

Released	1997-04-01
Method	X-RAY DIFFRACTION 2.1 Å
Chain IDs	A, B
Organism	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE

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1ODX: Entity 1	Download File View File

HIV-1 Proteinase mutant A71T, V82A

Kervinen, J., Thanki, N., Zdanov, A., Wlodawer, A.

(1996) Protein Pept Lett 3: 399

Released	1997-04-01
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B
Organism	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE

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1QA4: Entity 1	Download File View File

HIV-1 NEF ANCHOR DOMAIN, NMR, 2 STRUCTURES

Geyer, M., Kalbitzer, H.R.

(1999) J Mol Biology 289: 123-138

Released	1999-05-26
Method	SOLUTION NMR
Chain ID	A
Organism	Human immunodeficiency virus 1
Macromolecule	Protein Nef

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1QA5: Entity 1	Download File View File

MYRISTOYLATED HIV-1 NEF ANCHOR DOMAIN, NMR, 2 STRUCTURES

Geyer, M., Kalbitzer, H.R.

(1999) J Mol Biology 289: 123-138

Released	1999-05-26
Method	SOLUTION NMR
Chain ID	A
Organism	Human immunodeficiency virus 1
Macromolecule	PROTEIN (MYRISTOYLATED HIV-1 NEF ANCHOR DOMAIN (MYRISTATE-GLY2 TO TRP57))

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1UPH: Entity 1	Download File View File

HIV-1 Myristoylated Matrix

Tang, C., Loeliger, E., Luncsford, P., Kinde, I., Beckett, D., Summers, M.F.

(2004) Proc Natl Acad Sci U S A 101: 517

Released	2004-01-08
Method	SOLUTION NMR
Chain ID	A
Organism	Human immunodeficiency virus type 1 (CLONE 12)
Macromolecule	GAG POLYPROTEIN

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1UTS: Entity 1	Download File View File

Designed HIV-1 TAR Binding Ligand

Davis, B., Murchie, A.I.H., Aboul-Ela, F., Karn, J.

(2004) J Mol Biology 336: 625-638

Released	2004-02-12
Method	SOLUTION NMR
Chain ID	A [auth B]
Organism	Human immunodeficiency virus 1
Macromolecule	RNA (5'-(GPGPCPAPGPAPUPCPUPGPAPGP CPCPUPGPGPGPAPGPCPUPCPUPCPUPGPCP*C) -3')

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1UUD: Entity 1	Download File View File

NMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNA

Davis, B., Afshar, M., Varani, G., Karn, J., Murchie, A.I.H., Lentzen, G., Drysdale, M.J., Potter, A.J., Bower, J., Aboul-Ela, F.

(2004) J Mol Biology 336: 343

Released	2004-03-15
Method	SOLUTION NMR
Chain ID	A [auth B]
Organism	HIV-1 M:B_HXB2R
Macromolecule	RNA (5'-(GPGPCPAPGPAPUPCPUPGPAPGP CPCPUPGPGPGPAPGPCPUPCPUPCPUPGPCP*C) -3')

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1W5V: Entity 1	Download File View File

HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor

Lindberg, J., Pyring, D., Loewgren, S., Rosenquist, A., Zuccarello, G., Kvarnstroem, I., Zhang, H., Vrang, L., Claesson, B., Hallberg, A., Samuelsson, B., Unge, T.

(2004) Eur J Biochem 271: 4594

Released	2004-12-01
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B
Organism	Human immunodeficiency virus
Macromolecule	HIV-1 PROTEASE

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1W5W: Entity 1	Download File View File

HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor

Lindberg, J., Pyring, D., Loewgren, S., Rosenquist, A., Zuccarello, G., Kvarnstroem, I., Zhang, H., Vrang, L., Claesson, B., Hallberg, A., Samuelsson, B., Unge, T.

(2004) Eur J Biochem 271: 4594

Released	2004-12-22
Method	X-RAY DIFFRACTION 1.8 Å
Chain IDs	A, B
Organism	Human immunodeficiency virus
Macromolecule	POL POLYPROTEIN

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1W5X: Entity 1	Download File View File

HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor

Lindberg, J., Pyring, D., Loewgren, S., Rosenquist, A., Zuccarello, G., Kvarnstroem, I., Zhang, H., Vrang, L., Claesson, B., Hallberg, A., Samuelsson, B., Unge, T.

(2004) Eur J Biochem 271: 4594

Released	2004-12-22
Method	X-RAY DIFFRACTION 1.9 Å
Chain IDs	A, B
Organism	Human immunodeficiency virus
Macromolecule	POL POLYPROTEIN

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1W5Y: Entity 1	Download File View File

HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor

Lindberg, J., Pyring, D., Loewgren, S., Rosenquist, A., Zuccarello, G., Kvarnstroem, I., Zhang, H., Vrang, L., Claesson, B., Hallberg, A., Samuelsson, B., Unge, T.

(2004) Eur J Biochem 271: 4594

Released	2004-10-07
Method	X-RAY DIFFRACTION 1.9 Å
Chain IDs	A, B
Organism	Human immunodeficiency virus
Macromolecule	POL POLYPROTEIN

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2BUO: Entity 1	Download File View File

HIV-1 capsid C-terminal domain in complex with an inhibitor of particle assembly

Ternois, F., Sticht, J., Duquerroy, S., Krausslich, H.-G., Rey, F.A.

(2005) Nat Struct Mol Biol 12: 678

Released	2005-07-21
Method	X-RAY DIFFRACTION 1.7 Å
Chain ID	A
Organism	Human immunodeficiency virus 1
Macromolecule	HIV-1 CAPSID PROTEIN

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2C55: Entity 1	Download File View File

Solution Structure of the Human Immunodeficiency Virus Type 1 p6 Protein

Fossen, T., Wray, V., Bruns, K., Rachmat, J., Henklein, P., Tessmer, U., Maczurek, A., Klinger, P., Schubert, U.

(2005) J Biological Chem 280: 42515

Released	2005-11-02
Method	SOLUTION NMR
Chain ID	A
Organism	Human immunodeficiency virus 1
Macromolecule	PROTEIN P6

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2K7Y: Entity 1	Download File View File

Solution fold of HIV-1 Virus protein U cytoplasmic domain in the presence of DPC micelles

Wittlich, M., Koenig, B.W., Willbold, D.

(2009) FEBS J 276: 6560-6575

Released	2009-11-10
Method	SOLUTION NMR
Chain ID	A
Organism	Human immunodeficiency virus type 1 (SF162 ISOLATE)
Macromolecule	Protein Vpu

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2KOD: Entity 1	Download File View File

A high-resolution NMR structure of the dimeric C-terminal domain of HIV-1 CA

Byeon, I.-J.L., Jung, J., Ahn, J., concel, J., Gronenborn, A.M.

(2009) Cell 139: 780-790

Released	2009-11-24
Method	SOLUTION NMR
Chain IDs	A, B
Organism	HIV-1 M:B_HXB2R
Macromolecule	HIV-1 CA C-terminal domain

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2L45: Entity 1	Download File View File

C-terminal zinc knuckle of the HIVNCp7 with DNA

Quintal, S., Viegas, A., Cabrita, E., Farrell, N., Erhardt, S.

(2012) Biochemistry 51: 1752-1761

Released	2011-12-14
Method	SOLUTION NMR
Chain ID	A
Organism	Human immunodeficiency virus 1
Macromolecule	C-TERMINAL ZINC KNUCLE OF THE HIV-NCP7

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2L46: Entity 1	Download File View File

C-terminal zinc finger of the HIVNCp7 with platinated DNA

Quintal, S., Viegas, A., Cabrita, E., Farrell, N., Erhardt, S.

(2012) Biochemistry 51: 1752-1761

Released	2011-12-14
Method	SOLUTION NMR
Chain ID	A
Organism	Human immunodeficiency virus 1
Macromolecule	C-TERMINAL ZINC KNUCLE OF THE HIV-NCP7

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2L4L: Entity 1	Download File View File

Structural insights into the cTAR DNA recognition by the HIV-1 Nucleocapsid protein: role of sugar deoxyriboses in the binding polarity of NC

Bazzi, A., Zargarian, L., Chaminade, F., Boudier, C., De Rocquigny, H., Rene, B., Mely, Y., Fosse, P., Mauffret, O.

(2011) Nucleic Acids Res 39: 3903-3916

Released	2010-12-08
Method	SOLUTION NMR
Chain ID	A
Organism	Human immunodeficiency virus 1
Macromolecule	HIV-1 nucleocapsid protein NCp7

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2M3Z: Entity 1	Download File View File

NMR solution structure of HIV-1 nucleocapsid protein in complex with an inhibitor displaying a 2 inhibitors:1 NC stoichiometry

Goudreau, N., Hucke, O.

(2013) J Mol Biology 425: 1982-1998

Released	2013-02-27
Method	SOLUTION NMR
Chain ID	A
Organism	Human immunodeficiency virus type 1 (NEW YORK-5 ISOLATE)
Macromolecule	NUCLEOCAPSID PROTEIN P7

1 to 25 of 1,081 Polymer Entities

Page 1 of 44

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

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