RCSB PDB: Search

1K28 \| pdb_00001k28	Download File View File

The Structure of the Bacteriophage T4 Cell-Puncturing Device

Kanamaru, S., Leiman, P.G., Kostyuchenko, V.A., Chipman, P.R., Mesyanzhinov, V.V., Arisaka, F., Rossmann, M.G.

(2002) Nature 415: 553-557

Released	2002-02-06
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Tequatrovirus T4
Macromolecule	BASEPLATE STRUCTURAL PROTEIN GP27 (protein) TAIL-ASSOCIATED LYSOZYME (protein)
Unique Ligands	K, PO4

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1SKR \| pdb_00001skr	Download File View File

T7 DNA Polymerase Complexed To DNA Primer/Template and ddATP

Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.

(2004) Nat Struct Mol Biol 11: 784-790

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCPTPTPTPGPGPCPAPCPTPGPGPCPCPGPTPCPGPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(CPGPAPAPAPAPCPGPAPCGPGPCPCPAPGPTPGPCPCPAP(2DA))-3' (nucleic acid)
Unique Ligands	DAD, MG

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1SKS \| pdb_00001sks	Download File View File

Binary 3' complex of T7 DNA polymerase with a DNA primer/template containing a cis-syn thymine dimer on the template

Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.

(2004) Nat Struct Mol Biol 11: 784-790

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCP(TTD)PAPGPGPCPAPCPTPGPGPCPCPGPTPCPGPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(CPGPAPAPAPAPCPGPAPCGPGPCPCPAPGPTPGPCPCP(2DT))-3' (nucleic acid)
Unique Ligands	MG

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1SKW \| pdb_00001skw	Download File View File

Binary 3' complex of T7 DNA polymerase with a DNA primer/template containing a disordered cis-syn thymine dimer on the template

Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.

(2004) Nat Struct Mol Biol 11: 784-790

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) thioredoxin 1 (protein) 5'-D(CPCPCP(TTD)PAPGPGPCPAPCPTPGPGPCPCPGPTPCPGPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(CPGPAPAPAPAPCPGPAPCGPGPCPCPAPGPTPGPCPCP(2DT))-3' (nucleic acid)
Unique Ligands	MG

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1SL0 \| pdb_00001sl0	Download File View File

Ternary 3' complex of T7 DNA polymerase with a DNA primer/template containing a disordered cis-syn thymine dimer on the template and an incoming nucleotide

Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.

(2004) Nat Struct Mol Biol 11: 784-790

Released	2004-07-06
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCP(TTD)PAPGPGPCPAPCPTPGPGPCPCPGPTPCPGPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(CPGPAPAPAPAPCPGPAPCPGPGPCPCPAPGPTPGPCPCP(2DT))-3' (nucleic acid)
Unique Ligands	DAD, MG

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1SL1 \| pdb_00001sl1	Download File View File

Binary 5' complex of T7 DNA polymerase with a DNA primer/template containing a cis-syn thymine dimer on the template

Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.

(2004) Nat Struct Mol Biol 11: 784-790

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPC(TTD)PAPGPGPCPAPCPTPGPGPCPCPGPTPCPGPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(CPGPAPAPAPAPCPGPAPCPGPGPCPCPAPGPTPGPCPCPTP*(2DA))-3' (nucleic acid)
Unique Ligands	MG

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1SL2 \| pdb_00001sl2	Download File View File

Ternary 5' complex of T7 DNA polymerase with a DNA primer/template containing a cis-syn thymine dimer on the template and an incoming nucleotide

Li, Y., Dutta, S., Doublie, S., Bdour, H.M., Taylor, J.S., Ellenberger, T.

(2004) Nat Struct Mol Biol 11: 784-790

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCP(TTD)PAPGPGPCPAPCPTPGPGPCPCPGPTPCPGPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(CPGPAPAPAPAPCPGPAPCPGPGPCPCPAPGPTPGPCPCPTP*(2DA))-3' (nucleic acid)
Unique Ligands	DAD, MG

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1T8E \| pdb_00001t8e	Download File View File

T7 DNA Polymerase Ternary Complex with dCTP at the Insertion Site.

Brieba, L.G., Eichman, B.F., Kokoska, R.J., Doublie, S., Kunkel, T.A., Ellenberger, T.

(2004) EMBO J 23: 3452-3461

Released	2004-10-12
Method	X-RAY DIFFRACTION 2.54 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) thioredoxin 1 (protein) 25-MER (nucleic acid) 5'-D(PCPGPAPAPAPAPCPGPAPCPGPGPCPCPAPGPTPGPCPCPAP(2DT))-3' (nucleic acid)
Unique Ligands	DCT, MES, MG, PG4, SO4

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1TK0 \| pdb_00001tk0	Download File View File

T7 DNA polymerase ternary complex with 8 oxo guanosine and ddCTP at the insertion site

Brieba, L.G., Eichman, B.F., Kokoska, R.J., Doublie, S., Kunkel, T.A., Ellenberger, T.

(2004) EMBO J 23: 3452-3461

Released	2004-08-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCP(8OG)PCPTPGPGPCPAPCPTPGPGPCPCPGPTPCPGPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(CPGPAPAPAPAPCPGPACPGPGPCPCPAPGPTPGPCPCPAP(DDG))-3' (nucleic acid)
Unique Ligands	1PE, DCT, MES, MG, SO4

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1TK5 \| pdb_00001tk5	Download File View File

T7 DNA polymerase binary complex with 8 oxo guanosine in the templating strand

Brieba, L.G., Eichman, B.F., Kokoska, R.J., Doublie, S., Kunkel, T.A., Ellenberger, T.

(2004) EMBO J 23: 3452-3461

Released	2004-08-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCP(8OG)PCPTPGPGPCPAPCPTPGPGPCPCPGPTPCPGPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(CPGPAPAPAGPCPCPAPGPTPGPCPCPAP(DDG)PTPGPCPAP*A)-3' (nucleic acid)
Unique Ligands	1PE, MES, MG, SO4

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1TK8 \| pdb_00001tk8	Download File View File

T7 DNA polymerase ternary complex with 8 oxo guanosine and dAMP at the elongation site

Brieba, L.G., Eichman, B.F., Kokoska, R.J., Doublie, S., Kunkel, T.A., Ellenberger, T.

(2004) EMBO J 23: 3452-3461

Released	2004-08-31
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCPAP(8OG)PTPGPGPCPAPCPTPGPGPCPCPGPTPCPGPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(CPGPAPAPAPAPCPGPAPCPGPGPCPCPAPGPTPGPCPCPAP(2DA))-3' (nucleic acid)
Unique Ligands	1PE, D3T, MES, MG, SO4

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1TKD \| pdb_00001tkd	Download File View File

T7 DNA polymerase ternary complex with 8 oxo guanosine and dCMP at the elongation site

Brieba, L.G., Eichman, B.F., Kokoska, R.J., Doublie, S., Kunkel, T.A., Ellenberger, T.

(2004) EMBO J 23: 3452-3461

Released	2004-08-31
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) DNA (5'-D(CPCPCPAP(8OG)PTPGPGPCPAPCPTPGPGPCPCPGPTPCPGPTPTPTPTPCPG)-3') (nucleic acid) DNA (5'-D(CPGPAPAPAPAPCPGPAPCPGPGPCPCPAPGPTPGPCPCPAP(DOC))-3') (nucleic acid)
Unique Ligands	1PE, D3T, MES, MG, SO4

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1WTH \| pdb_00001wth	Download File View File

Crystal structure of gp5-S351L mutant and gp27 complex

Kanamaru, S., Ishiwata, Y., Suzuki, T., Rossmann, M.G., Arisaka, F.

(2005) J Mol Biology 346: 1013-1020

Released	2005-03-08
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Tequatrovirus T4
Macromolecule	Baseplate structural protein Gp27 (protein) Tail-associated lysozyme (protein)
Unique Ligands	K, PO4

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1X9M \| pdb_00001x9m	Download File View File

T7 DNA polymerase in complex with an N-2-acetylaminofluorene-adducted DNA

Dutta, S., Li, Y., Johnson, D., Dzantiev, L., Richardson, C.C., Romano, L.J., Ellenberger, T.

(2004) Proc Natl Acad Sci U S A 101: 16186-16191

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCP(8FG)PAPTPCPAPCPAPCPTPAPCPCPAPAPTPCPAPCPTPCPTPCPC)-3' (nucleic acid) 5'-D(GPGPAPGPAPGPTPGPAPTPTPGPGPTPAPGPTPGPTPGPAP(2DT))-3' (nucleic acid)
Unique Ligands	MG

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1X9S \| pdb_00001x9s	Download File View File

T7 DNA polymerase in complex with a primer/template DNA containing a disordered N-2 aminofluorene on the template, crystallized with dideoxy-CTP as the incoming nucleotide.

Dutta, S., Li, Y., Johnson, D., Dzantiev, L., Richardson, C.C., Romano, L.J., Ellenberger, T.

(2004) Proc Natl Acad Sci U S A 101: 16186-16191

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCP(AFG)PAPTPCPAPCPAPCPTPAPCPCPAPAPTPCPAPCPTPCPTPCPC)-3' (nucleic acid) 5'-D(GPGPAPGPAPGPTPGPAPTPTGPGPTPAPGPTPGPTPGPAP(2DT))-3' (nucleic acid)
Unique Ligands	MG

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1X9W \| pdb_00001x9w	Download File View File

T7 DNA polymerase in complex with a primer/template DNA containing a disordered N-2 aminofluorene on the template, crystallized with dideoxy-ATP as the incoming nucleotide.

Dutta, S., Li, Y., Johnson, D., Dzantiev, L., Richardson, C.C., Romano, L.J., Ellenberger, T.

(2004) Proc Natl Acad Sci U S A 101: 16186-16191

Released	2004-10-26
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCP(AFG)APTPCPAPCPAPCPTPAPCPCPAPAPTPCPAPCPTPCPTPCPC)-3' (nucleic acid) 5'-D(GPGPAPGPAPGPTPGPAPTPTGPGPTAPGPTPGPTPGPAP(2DT))-3' (nucleic acid)
Unique Ligands	MG

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1ZYQ \| pdb_00001zyq	Download File View File

T7 DNA polymerase in complex with 8oG and incoming ddATP

Brieba, L.G., Kokoska, R.J., Bebenek, K., Kunkel, T.A., Ellenberger, T.

(2005) Structure 13: 1653-1659

Released	2005-11-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	DNA polymerase (protein) Thioredoxin 1 (protein) 5'-D(CPCPCP(8OG)PCPTPGPGPCPAPCPTPGPGPCPCPGPTPCPGPTPTPTPTPCPG)-3' (nucleic acid) 5'-D(CPGPAPAPAPAPCPGPAPCPGPGPCPCPAPGPTPGPCPCPAP(DDG))-3' (nucleic acid)
Unique Ligands	DAD, MG

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2AJQ \| pdb_00002ajq	Download File View File

Structure of replicative DNA polymerase provides insigts into the mechanisms for processivity, frameshifting and editing

Brieba, L., Ellenberger, T.

To be published

Released	2006-09-26
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli Escherichia phage T7
Macromolecule	T7 DNA polymerase (protein) thioredoxin 1 (protein) DNA Primer (nucleic acid) DNA Template (nucleic acid)