RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "CDC54"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 821 Structures.

Refinements

Structure Determination Methodology

experimental (821)

Scientific Name of Source Organism

	Homo sapiens (339)
	synthetic construct (176)
	Severe acute respiratory syndrome coronavirus 2 (117)
	Saccharomyces cerevisiae S288C (83)
	Saccharomyces cerevisiae (76)
	Sus scrofa (45)
	Xenopus laevis (25)
	Escherichia phage T7 (18)
	Amanita phalloides (16)
	Escherichia coli (15)

More...

Taxonomy

	Eukaryota (528)
	other sequences (176)
	Riboviria (132)
	Bacteria (93)
	Archaea (36)
	Duplodnaviria (33)
	Monodnaviria (31)
	Varidnaviria (18)
	Eukaryota (eukaryotes) (4)
	unclassified sequences (4)

Experimental Method

	X-RAY DIFFRACTION (395)
	ELECTRON MICROSCOPY (394)
	SOLUTION NMR (32)

Polymer Entity Type

	Protein (821)
	DNA (315)
	RNA (69)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (13)
	1.5 - 2.0 (83)
	2.0 - 2.5 (128)
	2.5 - 3.0 (152)
	3.0 - 3.5 (163)
	3.5 - 4.0 (108)
	4.0 - 4.5 (50)
	> 4.5 (91)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (17)
	2005 - 2009 (32)
	2010 - 2014 (68)
	2015 - 2019 (193)
	2020 - 2024 (484)
	2025 - 2029 (23)

Enzyme Classification Name

	Hydrolases (821)
	Transferases (257)
	Isomerases (175)
	Translocases (6)
	Lyases (10)
	Oxidoreductases (1)

Membrane Protein Annotation

	OPM (6)
	PDBTM (6)
	MemProtMD (5)

Symmetry Type

	Asymmetric (655)
	Cyclic (153)
	Dihedral (20)
	Helical (7)

SCOP Classification

	Alpha and beta proteins (a/b) (31)
	All beta proteins (38)
	Artifacts (36)
	Alpha and beta proteins (a+b) (25)
	All alpha proteins (14)
	Multi-domain proteins (alpha and beta) (4)
	Small proteins (7)

AllSelected

1 to 25 of 821 Structures

Page 1 of 33

Sort by

Explore in 3D

1CR0 \| pdb_00001cr0	Download File View File

CRYSTAL STRUCTURE OF THE HELICASE DOMAIN OF THE GENE4 PROTEIN OF BACTERIOPHAGE T7

Sawaya, M.R., Guo, S., Tabor, S., Richardson, C.C., Ellenberger, T.

(1999) Cell 99: 167-177

Released	1999-11-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia phage T7
Macromolecule	DNA PRIMASE/HELICASE (protein)
Unique Ligands	SO4

Explore in 3D

1CR1 \| pdb_00001cr1	Download File View File

CRYSTAL STRUCTURE OF THE HELICASE DOMAIN OF THE GENE 4 PROTEIN OF BACTERIOPHAGE T7: COMPLEX WITH DTTP

Sawaya, M.R., Guo, S., Tabor, S., Richardson, C.C., Ellenberger, T.

(1999) Cell 99: 167-177

Released	1999-11-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia phage T7
Macromolecule	DNA PRIMASE/HELICASE (protein)
Unique Ligands	SO4, TTP

Explore in 3D

1CR2 \| pdb_00001cr2	Download File View File

CRYSTAL STRUCTURE OF THE HELICASE DOMAIN OF THE GENE 4 PROTEIN OF BACTERIOPHAGE T7: COMPLEX WITH DATP

Sawaya, M.R., Guo, S., Tabor, S., Richardson, C.C., Ellenberger, T.

(1999) Cell 99: 167-177

Released	1999-11-10
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Escherichia phage T7
Macromolecule	DNA PRIMASE/HELICASE (protein)
Unique Ligands	DTP, SO4

Explore in 3D

1CR4 \| pdb_00001cr4	Download File View File

CRYSTAL STRUCTURE OF THE HELICASE DOMAIN OF THE GENE 4 PROTEIN OF BACTERIOPHAGE T7: COMPLEX WITH DTDP

Sawaya, M.R., Guo, S., Tabor, S., Richardson, C.C., Ellenberger, T.

(1999) Cell 99: 167-177

Released	1999-11-10
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Escherichia phage T7
Macromolecule	DNA PRIMASE/HELICASE (protein)
Unique Ligands	SO4, TYD

Explore in 3D

1E0J \| pdb_00001e0j	Download File View File

gp4d helicase from phage T7 ADPNP complex

Singleton, M.R., Sawaya, M.R., Ellenberger, T., Wigley, D.B.

(2000) Cell 101: 589

Released	2000-06-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Escherichia phage T7
Macromolecule	DNA HELICASE (protein)
Unique Ligands	ANP, MG

Explore in 3D

1E0K \| pdb_00001e0k	Download File View File

gp4d helicase from phage T7

Singleton, M.R., Sawaya, M.R., Ellenberger, T., Wigley, D.B.

(2000) Cell 101: 589

Released	2000-06-09
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia phage T7
Macromolecule	DNA HELICASE (protein)

Explore in 3D

1F08 \| pdb_00001f08	Download File View File

CRYSTAL STRUCTURE OF THE DNA-BINDING DOMAIN OF THE REPLICATION INITIATION PROTEIN E1 FROM PAPILLOMAVIRUS

Enemark, E.J., Chen, G., Vaughn, D.E., Stenlund, A., Joshua-Tor, L.

(2000) Mol Cell 6: 149-158

Released	2001-05-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Bovine papillomavirus
Macromolecule	REPLICATION PROTEIN E1 (protein)
Unique Ligands	BR

Explore in 3D

1KA8 \| pdb_00001ka8	Download File View File

Crystal Structure of the Phage P4 Origin-Binding Domain

Yeo, H.J., Ziegelin, G., Korolev, S., Calendar, R., Lanka, E., Waksman, G.

(2002) Mol Microbiol 43: 855-867

Released	2002-04-17
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Enterobacteria phage P4
Macromolecule	putative P4-specific DNA primase (protein)

Explore in 3D

1KSX \| pdb_00001ksx	Download File View File

Crystal Structures of Two Intermediates in the Assembly of the Papillomavirus Replication Initiation Complex

Enemark, E.J., Stenlund, A., Joshua-Tor, L.

(2002) EMBO J 21: 1487-1496

Released	2002-03-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bovine papillomavirus
Macromolecule	REPLICATION PROTEIN E1 (protein) E1 Recognition Sequence (nucleic acid)

Explore in 3D

1KSY \| pdb_00001ksy	Download File View File

Crystal Structures of Two Intermediates in the Assembly of the Papillomavirus Replication Initiation Complex

Enemark, E.J., Stenlund, A., Joshua-Tor, L.

(2002) EMBO J 21: 1487-1496

Released	2002-03-15
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Bovine papillomavirus
Macromolecule	REPLICATION PROTEIN E1 (protein) E1 Recognition Sequence, Strand 1 (nucleic acid) E1 Recognition Sequence, Strand 2 (nucleic acid)

Explore in 3D

1LTL \| pdb_00001ltl	Download File View File

THE DODECAMER STRUCTURE OF MCM FROM ARCHAEAL M. THERMOAUTOTROPHICUM

Fletcher, R.J., Bishop, B.E., Leon, R.P., Sclafani, R.A., Ogata, C.M., Chen, X.S.

(2003) Nat Struct Biol 10: 160-167

Released	2003-05-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	DNA replication initiator (Cdc21/Cdc54) (protein)
Unique Ligands	ZN

Explore in 3D

1MM2 \| pdb_00001mm2	Download File View File

Solution structure of the 2nd PHD domain from Mi2b

Kwan, A.H.Y., Gell, D.A., Verger, A., Crossley, M., Matthews, J.M., Mackay, J.P.

(2003) Structure 11: 803-813

Released	2003-07-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Mi2-beta (protein)
Unique Ligands	ZN

Explore in 3D

1MM3 \| pdb_00001mm3	Download File View File

Solution structure of the 2nd PHD domain from Mi2b with C-terminal loop replaced by corresponding loop from WSTF

Kwan, A.H.Y., Gell, D.A., Verger, A., Crossley, M., Matthews, J.M., Mackay, J.P.

(2003) Structure 11: 803-813

Released	2003-07-22
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Mi2-beta(Chromodomain helicase-DNA-binding protein 4) and transcription factor WSTF (protein)
Unique Ligands	ZN

Explore in 3D

1MSZ \| pdb_00001msz	Download File View File

Solution structure of the R3H domain from human Smubp-2

Liepinsh, E., Leonchiks, A., Sharipo, A., Guignard, L., Otting, G.

(2003) J Mol Biology 326: 217-223

Released	2002-10-09
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DNA-binding protein SMUBP-2 (protein)

Explore in 3D

1NUI \| pdb_00001nui	Download File View File

Crystal Structure of the primase fragment of Bacteriophage T7 primase-helicase protein

Kato, M., Ito, T., Wagner, G., Richardson, C.C., Ellenberger, T.

(2003) Mol Cell 11: 1349-1360

Released	2003-05-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Escherichia phage T7
Macromolecule	DNA primase/helicase (protein)
Unique Ligands	MG, ZN

Explore in 3D

1P4D \| pdb_00001p4d	Download File View File

F factor TraI Relaxase Domain

Datta, S., Larkin, C., Schildbach, J.F.

(2003) Structure 11: 1369-1379

Released	2003-10-14
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Escherichia coli
Macromolecule	TraI protein (protein)
Unique Ligands	EDO, MG

Explore in 3D

1Q57 \| pdb_00001q57	Download File View File

The Crystal Structure of the Bifunctional Primase-Helicase of Bacteriophage T7

Toth, E.A., Li, Y., Sawaya, M.R., Cheng, Y., Ellenberger, T.

(2003) Mol Cell 12: 1113-1123

Released	2003-11-25
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Escherichia phage T7
Macromolecule	DNA primase/helicase (protein)

Explore in 3D

1R9W \| pdb_00001r9w	Download File View File

Crystal Structure of the DNA-binding domain of the human papillomavirus type 18 (HPV-18) replication initiation protein E1

Auster, A.S., Joshua-Tor, L.

(2004) J Biological Chem 279: 3733-3742

Released	2003-11-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	human papillomavirus 18
Macromolecule	Replication protein E1 (protein)

Explore in 3D

1S9H \| pdb_00001s9h	Download File View File

Crystal Structure of Adeno-associated virus Type 2 Rep40

James, J.A., Escalante, C.R., Yoon-Robarts, M., Edwards, T.A., Linden, R.M., Aggarwal, A.K.

(2003) Structure 11: 1025-1035

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	adeno-associated virus 2
Macromolecule	Rep 40 protein (protein)

Explore in 3D

1TUE \| pdb_00001tue	Download File View File

The X-ray Structure of the Papillomavirus Helicase in Complex with its Molecular Matchmaker E2

Abbate, E.A., Berger, J.M., Botchan, M.R.

(2004) Genes Dev 18: 1981-1996

Released	2004-08-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	human papillomavirus 18
Macromolecule	Regulatory protein E2 (protein) Replication protein E1 (protein)

Explore in 3D

1U0J \| pdb_00001u0j	Download File View File

Crystal Structure of AAV2 Rep40-ADP complex

James, J.A., Aggarwal, A.K., Linden, R.M., Escalante, C.R.

(2004) Proc Natl Acad Sci U S A 101: 12455-12460

Released	2004-08-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	adeno-associated virus 2
Macromolecule	DNA replication protein (protein)
Unique Ligands	ADP

Explore in 3D

1Z3I \| pdb_00001z3i	Download File View File

Structure of the SWI2/SNF2 chromatin remodeling domain of eukaryotic Rad54

Thoma, N.H., Czyzewski, B.K., Alexeev, A.A., Mazin, A.V., Kowalczykowski, S.C., Pavletich, N.P.

(2005) Nat Struct Mol Biol 12: 350-356

Released	2005-04-05
Method	X-RAY DIFFRACTION 3 Å
Organisms	Danio rerio
Macromolecule	similar to RAD54-like (protein)
Unique Ligands	SO4, ZN

Explore in 3D

2A0I \| pdb_00002a0i	Download File View File

F Factor TraI Relaxase Domain bound to F oriT Single-stranded DNA

Larkin, C., Datta, S., Harley, M.J., Anderson, B.J., Ebie, A., Hargreaves, V., Schildbach, J.F.

(2005) Structure 13: 1533-1544

Released	2005-10-25
Method	X-RAY DIFFRACTION 2.72 Å
Organisms	Escherichia coli
Macromolecule	TraI protein (protein) F plasmid single-stranded oriT DNA (nucleic acid)
Unique Ligands	IMD, MG

Explore in 3D

2B2T \| pdb_00002b2t	Download File View File

Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and phosphothreonine 3

Flanagan IV, J.F., Mi, L.-Z., Chruszcz, M., Cymborowski, M., Clines, K.L., Kim, Y., Minor, W., Rastinejad, F., Khorasanizadeh, S.

(2005) Nature 438: 1181-1185

Released	2005-12-27
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	Chromodomain-helicase-DNA-binding protein 1 (protein) Histone H3 tail (protein)

Explore in 3D

2B2U \| pdb_00002b2u	Download File View File

Tandem chromodomains of human CHD1 complexed with Histone H3 Tail containing trimethyllysine 4 and dimethylarginine 2

Flanagan IV, J.F., Mi, L.-Z., Chruszcz, M., Cymborowski, M., Clines, K.L., Kim, Y., Minor, W., Rastinejad, F., Khorasanizadeh, S.

(2005) Nature 438: 1181-1185

Released	2005-12-27
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Homo sapiens
Macromolecule	Chromodomain-helicase-DNA-binding protein 1 (protein) Histone H3 (protein)

1 to 25 of 821 Structures

Page 1 of 33

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CR0 | pdb_00001cr0

1CR1 | pdb_00001cr1

1CR2 | pdb_00001cr2

1CR4 | pdb_00001cr4

1E0J | pdb_00001e0j

1E0K | pdb_00001e0k

1F08 | pdb_00001f08

1KA8 | pdb_00001ka8

1KSX | pdb_00001ksx

1KSY | pdb_00001ksy

1LTL | pdb_00001ltl

1MM2 | pdb_00001mm2

1MM3 | pdb_00001mm3

1MSZ | pdb_00001msz

1NUI | pdb_00001nui

1P4D | pdb_00001p4d

1Q57 | pdb_00001q57

1R9W | pdb_00001r9w

1S9H | pdb_00001s9h

1TUE | pdb_00001tue

1U0J | pdb_00001u0j

1Z3I | pdb_00001z3i

2A0I | pdb_00002a0i

2B2T | pdb_00002b2t

2B2U | pdb_00002b2u