RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "VPU"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Human immunodeficiency virus 1 (8)
	Human immunodeficiency virus type 1 (SF162 ISOLATE) (2)
	Homo sapiens (1)
	Mus musculus (1)

Taxonomy

	Riboviria (10)
	Eukaryota (1)

Experimental Method

	SOLUTION NMR (5)
	SOLID-STATE NMR (4)
	X-RAY DIFFRACTION (1)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

3.0 - 3.5 (1)

Release Date

	2000 - 2004 (3)
	2005 - 2009 (4)
	2010 - 2014 (1)
	2015 - 2019 (2)

Membrane Protein Annotation

	OPM (2)
	PDBTM (2)
	MemProtMD (1)
	mpstruc (1)

Symmetry Type

Asymmetric (10)

SCOP Classification

	Peptides (3)
	Small proteins (2)
	All alpha proteins (1)
	Alpha and beta proteins (a+b) (1)
	Artifacts (1)

AllSelected

1 to 10 of 10 Structures

Page 1 of 1

Sort by

Explore in 3D

1PI7 \| pdb_00001pi7	Download File View File

Structure of the channel-forming trans-membrane domain of Virus protein "u" (Vpu) from HIV-1

Park, S.H., Mrse, A.A., Nevzorov, A.A., Mesleh, M.F., Oblatt-Montal, M., Montal, M., Opella, S.J.

(2003) J Mol Biology 333: 409-424

Released	2003-11-11
Method	SOLID-STATE NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	VPU protein (protein)

Explore in 3D

1PI8 \| pdb_00001pi8	Download File View File

Structure of the channel-forming trans-membrane domain of Virus protein "u" (Vpu) from HIV-1

Park, S.H., Mrse, A.A., Nevzorov, A.A., Mesleh, M.F., Oblatt-Montal, M., Montal, M., Opella, S.J.

(2003) J Mol Biology 333: 409-424

Released	2003-11-11
Method	SOLID-STATE NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	VPU protein (protein)

Explore in 3D

1PJE \| pdb_00001pje	Download File View File

Structure of the channel-forming trans-membrane domain of Virus protein "u"(Vpu) from HIV-1

Park, S.H., Mrse, A.A., Nevzorov, A.A., Mesleh, M.F., Oblatt-Montal, M., Montal, M., Opella, S.J.

(2003) J Mol Biology 333: 409-424

Released	2003-10-14
Method	SOLID-STATE NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	VPU protein (protein)

Explore in 3D

2GOF \| pdb_00002gof	Download File View File

Three-dimensional structure of the trans-membrane domain of Vpu from HIV-1 in aligned phospholipid bicelles

Park, S.H., De Angelis, A.A., Nevzorov, A.A., Wu, C.H., Opella, S.J.

(2006) Biophys J 91: 3032-3042

Released	2006-08-08
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	VPU protein (protein)

Explore in 3D

2GOH \| pdb_00002goh	Download File View File

Three-dimensional Structure of the Trans-membrane Domain of Vpu from HIV-1 in Aligned Phospholipid Bicelles

Park, S.H., De Angelis, A.A., Nevzorov, A.A., Wu, C.H., Opella, S.J.

(2006) Biophys J 91: 3032-3042

Released	2006-08-08
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	VPU protein (protein)

Explore in 3D

2JPX \| pdb_00002jpx	Download File View File

A18H Vpu TM structure in lipid bilayers

Park, S., Opella, S.J.

(2007) Protein Sci 16: 2205-2215

Released	2007-11-13
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	Vpu protein (protein)

Explore in 3D

2K7Y \| pdb_00002k7y	Download File View File

Solution fold of HIV-1 Virus protein U cytoplasmic domain in the presence of DPC micelles

Wittlich, M., Koenig, B.W., Willbold, D.

(2009) FEBS J 276: 6560-6575

Released	2009-11-10
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus type 1 (SF162 ISOLATE)
Macromolecule	Protein Vpu (protein)

Explore in 3D

2N28 \| pdb_00002n28	Download File View File

Solid-state NMR structure of Vpu

Zhang, H., Lin, E.C., Tian, Y., Das, B.B., Opella, S.J.

(2015) Biochim Biophys Acta 1848: 3007-3018

Released	2015-09-30
Method	SOLID-STATE NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	Protein Vpu (protein)

Explore in 3D

2N29 \| pdb_00002n29	Download File View File

Solution-state NMR structure of Vpu cytoplasmic domain

Zhang, H., Lin, E.C., Tian, Y., Das, B.B., Opella, S.J.

(2015) Biochim Biophys Acta 1848: 3007-3018

Released	2015-09-30
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus 1
Macromolecule	Protein Vpu (protein)

Explore in 3D

4P6Z \| pdb_00004p6z	Download File View File

Crystal structure of the human BST2 cytoplasmic domain and the HIV-1 Vpu cytoplasmic domain bound to the clathrin adaptor protein complex 1 (AP1) core

Jia, X., Xiong, Y.

(2014) Elife 3: e02362-e02362

Released	2014-05-21
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 (SF162 ISOLATE) Mus musculus
Macromolecule	Unique protein chains: 6

1 to 10 of 10 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1PI7 | pdb_00001pi7

Structure of the channel-forming trans-membrane domain of Virus protein "u" (Vpu) from HIV-1

1PI8 | pdb_00001pi8

Structure of the channel-forming trans-membrane domain of Virus protein "u" (Vpu) from HIV-1

1PJE | pdb_00001pje

Structure of the channel-forming trans-membrane domain of Virus protein "u"(Vpu) from HIV-1

2GOF | pdb_00002gof

Three-dimensional structure of the trans-membrane domain of Vpu from HIV-1 in aligned phospholipid bicelles

2GOH | pdb_00002goh

Three-dimensional Structure of the Trans-membrane Domain of Vpu from HIV-1 in Aligned Phospholipid Bicelles

2JPX | pdb_00002jpx

A18H Vpu TM structure in lipid bilayers

2K7Y | pdb_00002k7y

Solution fold of HIV-1 Virus protein U cytoplasmic domain in the presence of DPC micelles

2N28 | pdb_00002n28

Solid-state NMR structure of Vpu

2N29 | pdb_00002n29

Solution-state NMR structure of Vpu cytoplasmic domain

4P6Z | pdb_00004p6z

Crystal structure of the human BST2 cytoplasmic domain and the HIV-1 Vpu cytoplasmic domain bound to the clathrin adaptor protein complex 1 (AP1) core

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1PI7 | pdb_00001pi7

1PI8 | pdb_00001pi8

1PJE | pdb_00001pje

2GOF | pdb_00002gof

2GOH | pdb_00002goh

2JPX | pdb_00002jpx

2K7Y | pdb_00002k7y

2N28 | pdb_00002n28

2N29 | pdb_00002n29

4P6Z | pdb_00004p6z