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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Gene Name = "dinA"

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Escherichia coli K-12 (5)
	Escherichia coli (3)
	Bacillus subtilis (1)

Taxonomy

Bacteria (9)

Experimental Method

X-RAY DIFFRACTION (9)

Polymer Entity Type

	Protein (9)
	DNA (8)

Refinement Resolution (Å)

	1.5 - 2.0 (1)
	2.0 - 2.5 (5)
	2.5 - 3.0 (1)
	3.0 - 3.5 (2)

Release Date

2010 - 2014 (9)

Enzyme Classification Name

	Transferases (8)
	Hydrolases (1)

Symmetry Type

	Asymmetric (7)
	Cyclic (2)

SCOP Classification

	Alpha and beta proteins (a/b) (4)
	Multi-domain proteins (alpha and beta) (4)
	Artifacts (3)

AllSelected

1 to 9 of 9 Structures

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3K57 \| pdb_00003k57	Download File View File

Crystal structure of E.coli Pol II-normal DNA-dATP ternary complex

Yang, W., Wang, F.

(2009) Cell 139: 1279-1289

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Escherichia coli K-12
Macromolecule	DNA polymerase II (protein) DNA (5'-D(GTPAPTPGPTPAPCPGPCPTPAPGPGPCPAPCPG)-3') (nucleic acid) DNA (5'-D(GPTPGPCPCPTPAPGPCPGPTPAP*(DOC))-3') (nucleic acid)
Unique Ligands	DTP, MG

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3K58 \| pdb_00003k58	Download File View File

Crystal structure of E.coli Pol II-normal DNA-dTTP ternary complex

Yang, W., Wang, F.

(2009) Cell 139: 1279-1289

Released	2010-02-09
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli K-12
Macromolecule	DNA polymerase II (protein) DNA (5'-D(GPTPGPCPCPTPAPGPCPGPTPAP(DOC))-3') (nucleic acid) DNA (5'-D(TPAPAPGPTPAPCPGPCPTPAPGPGPCPAPCPA)-3') (nucleic acid)
Unique Ligands	MG, TTP

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3K59 \| pdb_00003k59	Download File View File

Crystal structure of E.coli Pol II-normal DNA-dCTP ternary complex

Yang, W., Wang, F.

(2009) Cell 139: 1279-1289

Released	2010-02-09
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Escherichia coli K-12
Macromolecule	DNA polymerase II (protein) DNA (5'-D(GPTPGPCPCPTPAPGPCPGPTPAP(DOC))-3') (nucleic acid) DNA (5'-D(TPAPGPGPTPAPCPGPCPTPAPGPGPCPAPCPA)-3') (nucleic acid)
Unique Ligands	DCP, MG

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3K5L \| pdb_00003k5l	Download File View File

Crystal structure of E.coli Pol II-abasic DNA-dATP Lt(0, 3) ternary complex

Yang, W., Wang, F.

(2009) Cell 139: 1279-1289

Released	2010-02-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Escherichia coli
Macromolecule	DNA polymerase II (protein) DNA (5'-D(GPTPGPCPCPTPAPGPCPGPTPAP(DOC))-3') (nucleic acid) DNA (5'-D(TPAPTP(3DR)PGPTPAPCPGPCPTPAPGPGPCPAPCP*A)-3') (nucleic acid)
Unique Ligands	DTP, MG

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3K5M \| pdb_00003k5m	Download File View File

Crystal structure of E.coli Pol II-abasic DNA-ddGTP Lt(-2, 2) ternary complex

Yang, W., Wang, F.

(2009) Cell 139: 1279-1289

Released	2010-02-02
Method	X-RAY DIFFRACTION 2.04 Å
Organisms	Escherichia coli
Macromolecule	DNA polymerase II (protein) DNA (5'-D(APGPTPCPCPTPGP(3DR)PAPCPGPCPTPAPGPGPCPAPCPA)-3') (nucleic acid) DNA (5'-D(GPTPGPCPCPTPAPGPCPGPTPAP*G)-3') (nucleic acid)
Unique Ligands	CA, DG3

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3K5N \| pdb_00003k5n	Download File View File

Crystal structure of E.coli Pol II-abasic DNA binary complex

Yang, W., Wang, F.

(2009) Cell 139: 1279-1289

Released	2010-02-02
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Escherichia coli
Macromolecule	DNA polymerase II (protein) DNA (5'-D(GPTPCPCPTPGP(3DR)TPAPCPGPCPTPAPGPGPCPAPCPA)-3') (nucleic acid) DNA (5'-D(GPTPGPCPCPTPAPGPCPGPTPAP*G)-3') (nucleic acid)

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3K5O \| pdb_00003k5o	Download File View File

Crystal structure of E.coli Pol II

Yang, W., Wang, F.

(2009) Cell 139: 1279-1289

Released	2010-02-02
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli K-12
Macromolecule	DNA polymerase II (protein)

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3MAQ \| pdb_00003maq	Download File View File

Crystal structure of E.coli Pol II-normal DNA-dGTP ternary complex

Yang, W., Wang, F.

(2009) Cell 139: 1279-1289

Released	2010-04-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli K-12
Macromolecule	DNA polymerase II (protein) DNA (5'-D(GPTPGPCPCPTPAPGPCPGPTPAP(DOC))-3') (nucleic acid) DNA (5'-D(TPAPCPGPTPAPCPGPCPTPAPGPGPCPAPCPA)-3') (nucleic acid)
Unique Ligands	DGT, MG

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3V4R \| pdb_00003v4r	Download File View File

Crystal structure of a UvrB dimer-DNA complex

Webster, M.P.J., Jukes, R., Barrett, T.

(2012) Nucleic Acids Res 40: 8743-8758

Released	2012-07-04
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Bacillus subtilis
Macromolecule	UvrABC system protein B (protein) DNA: 5 -TACTGTTT-3 (nucleic acid)
Unique Ligands	ADP

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3K57 | pdb_00003k57

Crystal structure of E.coli Pol II-normal DNA-dATP ternary complex

3K58 | pdb_00003k58

Crystal structure of E.coli Pol II-normal DNA-dTTP ternary complex

3K59 | pdb_00003k59

Crystal structure of E.coli Pol II-normal DNA-dCTP ternary complex

3K5L | pdb_00003k5l

Crystal structure of E.coli Pol II-abasic DNA-dATP Lt(0, 3) ternary complex

3K5M | pdb_00003k5m

Crystal structure of E.coli Pol II-abasic DNA-ddGTP Lt(-2, 2) ternary complex

3K5N | pdb_00003k5n

Crystal structure of E.coli Pol II-abasic DNA binary complex

3K5O | pdb_00003k5o

Crystal structure of E.coli Pol II

3MAQ | pdb_00003maq

Crystal structure of E.coli Pol II-normal DNA-dGTP ternary complex

3V4R | pdb_00003v4r

Crystal structure of a UvrB dimer-DNA complex

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

3K57 | pdb_00003k57

3K58 | pdb_00003k58

3K59 | pdb_00003k59

3K5L | pdb_00003k5l

3K5M | pdb_00003k5m

3K5N | pdb_00003k5n

3K5O | pdb_00003k5o

3MAQ | pdb_00003maq

3V4R | pdb_00003v4r