RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Gene Name = "rad50"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Pyrococcus furiosus DSM 3638 (5)
	Pyrococcus furiosus (4)
	synthetic construct (4)
	Methanocaldococcus jannaschii (3)
	Methanocaldococcus jannaschii DSM 2661 (2)
	Thermotoga maritima (2)
	Homo sapiens (1)
	Saccharomyces cerevisiae (1)
	Thermotoga maritima MSB8 (1)

Taxonomy

	Archaea (14)
	other sequences (4)
	Bacteria (3)
	Eukaryota (2)

Experimental Method

	X-RAY DIFFRACTION (18)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

	Protein (19)
	DNA (4)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (5)
	2.5 - 3.0 (4)
	3.0 - 3.5 (8)

Release Date

	2010 - 2014 (13)
	2015 - 2019 (4)
	2020 - 2024 (1)
	2025 - 2029 (1)

Enzyme Classification Name

Hydrolases (12)

Symmetry Type

	Asymmetric (10)
	Cyclic (10)

AllSelected

1 to 19 of 19 Structures

Page 1 of 1

Sort by

Explore in 3D

3AUX \| pdb_00003aux	Download File View File

Crystal structure of Rad50 bound to ADP

Lim, H.S., Cho, Y.

To be published

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	DNA double-strand break repair rad50 ATPase (protein)
Unique Ligands	ADP, MG

Explore in 3D

3AUY \| pdb_00003auy	Download File View File

Crystal structure of Rad50 bound to ADP

Lim, H.S., Cho, Y.

To be published

Released	2011-05-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	DNA double-strand break repair rad50 ATPase (protein)
Unique Ligands	ADP, MG

Explore in 3D

3AV0 \| pdb_00003av0	Download File View File

Crystal structure of Mre11-Rad50 bound to ATP S

Lim, H.S., Kim, J.S., Cho, Y.

To be published

Released	2011-05-25
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	DNA double-strand break repair protein mre11 (protein) DNA double-strand break repair rad50 ATPase (protein)
Unique Ligands	AGS, GOL, IPA, MG, SO4

Explore in 3D

3QG5 \| pdb_00003qg5	Download File View File

The Mre11:Rad50 complex forms an ATP dependent molecular clamp in DNA double-strand break repair

Lammens, K.

(2011) Cell 145: 54-66

Released	2011-04-20
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Thermotoga maritima
Macromolecule	Mre11 (protein) rad50 (protein)
Unique Ligands	GOL

Explore in 3D

3QKR \| pdb_00003qkr	Download File View File

Mre11 Rad50 binding domain bound to Rad50

Williams, G.J., Williams, R.S., Arvai, A., Moncalian, G., Tainer, J.A.

(2011) Nat Struct Mol Biol 18: 423-431

Released	2011-03-30
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair protein mre11 (protein) DNA double-strand break repair rad50 ATPase (protein)
Unique Ligands	PO4

Explore in 3D

3QKS \| pdb_00003qks	Download File View File

Mre11 Rad50 binding domain bound to Rad50

Williams, G.J., Williams, R.S., Arvai, A., Moncalian, G., Tainer, J.A.

(2011) Nat Struct Mol Biol 18: 423-431

Released	2011-03-30
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair protein mre11 (protein) DNA double-strand break repair rad50 ATPase (protein)

Explore in 3D

3QKT \| pdb_00003qkt	Download File View File

Rad50 ABC-ATPase with adjacent coiled-coil region in complex with AMP-PNP

Williams, G.J., Williams, R.S., Arvai, A., Moncalian, G., Tainer, J.A.

(2011) Nat Struct Mol Biol 18: 423-431

Released	2011-03-30
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair rad50 ATPase (protein)
Unique Ligands	ANP, MG

Explore in 3D

3QKU \| pdb_00003qku	Download File View File

Mre11 Rad50 binding domain in complex with Rad50 and AMP-PNP

Williams, G.J., Williams, R.S., Arvai, A., Moncalian, G., Tainer, J.A.

(2011) Nat Struct Mol Biol 18: 423-431

Released	2011-03-30
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Pyrococcus furiosus
Macromolecule	DNA double-strand break repair protein mre11 (protein) DNA double-strand break repair rad50 ATPase (protein)
Unique Ligands	ANP, MG

Explore in 3D

3THO \| pdb_00003tho	Download File View File

Crystal structure of Mre11:Rad50 in its ATP/ADP bound state

Moeckel, C., Lammens, K.

(2012) Nucleic Acids Res 40: 914-927

Released	2011-10-12
Method	X-RAY DIFFRACTION 2.6081 Å
Organisms	Thermotoga maritima
Macromolecule	Exonuclease, putative (protein) Probable DNA double-strand break repair Rad50 ATPase (protein)
Unique Ligands	ADP, MG, MN, PO4, SO4

Explore in 3D

4NCH \| pdb_00004nch	Download File View File

Crystal Structure of Pyrococcus furiosis Rad50 L802W mutation

Classen, S., Williams, G.J., Arvai, A.S., Williams, R.S.

(2014) EMBO J 33: 482-500

Released	2014-03-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	DNA double-strand break repair Rad50 ATPase (protein)
Unique Ligands	SO4

Explore in 3D

4NCI \| pdb_00004nci	Download File View File

Crystal Structure of Pyrococcus furiosis Rad50 R805E mutation

Classen, S., Williams, G.J., Arvai, A.S., Williams, R.S.

(2014) EMBO J 33: 482-500

Released	2014-03-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	DNA double-strand break repair Rad50 ATPase (protein)

Explore in 3D

4NCJ \| pdb_00004ncj	Download File View File

Crystal Structure of Pyrococcus furiosis Rad50 R805E mutation with ADP Beryllium Flouride

Classen, S., Williams, G.J., Arvai, A.S., Williams, R.S.

(2014) EMBO J 33: 482-500

Released	2014-03-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	DNA double-strand break repair Rad50 ATPase (protein)
Unique Ligands	ADP, BEF, MG

Explore in 3D

4NCK \| pdb_00004nck	Download File View File

Crystal Structure of Pyrococcus furiosis Rad50 R797G mutation

Classen, S., Williams, G.J., Arvai, A.S., Williams, R.S.

(2014) EMBO J 33: 482-500

Released	2014-03-05
Method	X-RAY DIFFRACTION 1.99 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	DNA double-strand break repair Rad50 ATPase (protein)
Unique Ligands	CL, MG, SO4

Explore in 3D

4W9M \| pdb_00004w9m	Download File View File

AMPPNP bound Rad50 in complex with dsDNA

Rojowska, A., Lammens, K.

(2014) EMBO J 33: 2847-2859

Released	2015-01-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermotoga maritima MSB8 synthetic construct
Macromolecule	Exonuclease, putative (protein) Probable DNA double-strand break repair Rad50 ATPase,Probable DNA double-strand break repair Rad50 ATPase (protein) DNA (5'-D(GPGPTPCPGPGPTPCPAPCPCPGPAPCPC)-3') (nucleic acid) DNA (5'-D(GPGPTPCPGPGPTPGPAPCPCPGPAPCPC)-3') (nucleic acid)
Unique Ligands	ANP, MG

Explore in 3D

5DNY \| pdb_00005dny	Download File View File

Structure of the ATPrS-Mre11/Rad50-DNA complex

Liu, Y.

(2016) EMBO J 35: 743-758

Released	2016-02-24
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Methanocaldococcus jannaschii DSM 2661 synthetic construct
Macromolecule	DNA double-strand break repair Rad50 ATPase,DNA double-strand break repair Rad50 ATPase (protein) DNA double-strand break repair protein Mre11 (protein) DNA (27-MER) (nucleic acid)
Unique Ligands	AGS, MG

Explore in 3D

5F3W \| pdb_00005f3w	Download File View File

Structure of the ATPrS-Mre11/Rad50-DNA complex

Liu, Y.

(2016) EMBO J 35: 743-758

Released	2016-03-02
Method	X-RAY DIFFRACTION 3.11 Å
Organisms	Methanocaldococcus jannaschii DSM 2661 synthetic construct
Macromolecule	DNA double-strand break repair Rad50 ATPase,DNA double-strand break repair Rad50 ATPase (protein) DNA double-strand break repair protein Mre11 (protein) 27-MER DNA (nucleic acid)
Unique Ligands	AGS, MG

Explore in 3D

5GOX \| pdb_00005gox	Download File View File

Eukaryotic Rad50 Functions as A Rod-shaped Dimer

Park, Y.B., Hohl, M., Padjasek, M., Jeong, E., Jin, K.S., Krezel, A., Petrini, J.H.J., Cho, Y.

(2017) Nat Struct Mol Biol 24: 248-257

Released	2017-02-01
Method	X-RAY DIFFRACTION 2.405 Å
Organisms	Homo sapiens
Macromolecule	DNA repair protein RAD50 (protein)
Unique Ligands	GOL, ZN

Explore in 3D

6ZFF \| pdb_00006zff	Download File View File

Pyrococcus furiosus Rad50 coiled coils in rod configuration

Soh, Y.M., Basquin, J., Gruber, S.

(2021) Proteins 89: 251-255

Released	2020-07-08
Method	X-RAY DIFFRACTION 3 Å
Organisms	Pyrococcus furiosus DSM 3638
Macromolecule	DNA double-strand break repair Rad50 ATPase (protein)
Unique Ligands	ZN

Explore in 3D

9BI4 \| pdb_00009bi4	Download File View File

cryo EM structure of dsDNA bound Mre11-Rad50 complex

Yu, Y., Patel, D.J.

(2024) Res Sq

Released	2025-01-15
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Saccharomyces cerevisiae synthetic construct
Macromolecule	DNA repair protein RAD50 (protein) Double-strand break repair protein MRE11 (protein) one strand of dsDNA (nucleic acid) second strand of dsDNA (nucleic acid)
Unique Ligands	ATP, MG, MN

1 to 19 of 19 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

3AUX | pdb_00003aux

Crystal structure of Rad50 bound to ADP

3AUY | pdb_00003auy

Crystal structure of Rad50 bound to ADP

3AV0 | pdb_00003av0

Crystal structure of Mre11-Rad50 bound to ATP S

3QG5 | pdb_00003qg5

The Mre11:Rad50 complex forms an ATP dependent molecular clamp in DNA double-strand break repair

3QKR | pdb_00003qkr

Mre11 Rad50 binding domain bound to Rad50

3QKS | pdb_00003qks

Mre11 Rad50 binding domain bound to Rad50

3QKT | pdb_00003qkt

Rad50 ABC-ATPase with adjacent coiled-coil region in complex with AMP-PNP

3QKU | pdb_00003qku

Mre11 Rad50 binding domain in complex with Rad50 and AMP-PNP

3THO | pdb_00003tho

Crystal structure of Mre11:Rad50 in its ATP/ADP bound state

4NCH | pdb_00004nch

Crystal Structure of Pyrococcus furiosis Rad50 L802W mutation

4NCI | pdb_00004nci

Crystal Structure of Pyrococcus furiosis Rad50 R805E mutation

4NCJ | pdb_00004ncj

Crystal Structure of Pyrococcus furiosis Rad50 R805E mutation with ADP Beryllium Flouride

4NCK | pdb_00004nck

Crystal Structure of Pyrococcus furiosis Rad50 R797G mutation

4W9M | pdb_00004w9m

AMPPNP bound Rad50 in complex with dsDNA

5DNY | pdb_00005dny

Structure of the ATPrS-Mre11/Rad50-DNA complex

5F3W | pdb_00005f3w

Structure of the ATPrS-Mre11/Rad50-DNA complex

5GOX | pdb_00005gox

Eukaryotic Rad50 Functions as A Rod-shaped Dimer

6ZFF | pdb_00006zff

Pyrococcus furiosus Rad50 coiled coils in rod configuration

9BI4 | pdb_00009bi4

cryo EM structure of dsDNA bound Mre11-Rad50 complex

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

3AUX | pdb_00003aux

3AUY | pdb_00003auy

3AV0 | pdb_00003av0

3QG5 | pdb_00003qg5

3QKR | pdb_00003qkr

3QKS | pdb_00003qks

3QKT | pdb_00003qkt

3QKU | pdb_00003qku

3THO | pdb_00003tho

4NCH | pdb_00004nch

4NCI | pdb_00004nci

4NCJ | pdb_00004ncj

4NCK | pdb_00004nck

4W9M | pdb_00004w9m

5DNY | pdb_00005dny

5F3W | pdb_00005f3w

5GOX | pdb_00005gox

6ZFF | pdb_00006zff

9BI4 | pdb_00009bi4