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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy ID (Full Lineage) = "1833"

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Search Summary

This query matches 117 Polymer Entities.

Refinements

Structure Determination Methodology

experimental (117)

Scientific Name of Source Organism

	Rhodococcus erythropolis (114)
	Rhodococcus erythropolis DN1 (1)
	Rhodococcus erythropolis PR4 (1)
	Rhodococcus erythropolis XP (1)

Taxonomy

Bacteria (117)

Experimental Method

X-RAY DIFFRACTION (117)

Polymer Entity Type

Protein (117)

Refinement Resolution (Å)

	1.0 - 1.5 (34)
	1.5 - 2.0 (41)
	2.0 - 2.5 (24)
	2.5 - 3.0 (13)
	3.0 - 3.5 (5)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (7)
	2005 - 2009 (35)
	2010 - 2014 (22)
	2015 - 2019 (37)
	2020 - 2024 (14)

Enzyme Classification Name

	Lyases (58)
	Hydrolases (35)
	Oxidoreductases (15)

Symmetry Type

	Cyclic (64)
	Asymmetric (62)
	Dihedral (14)

SCOP Classification

	Alpha and beta proteins (a+b) (56)
	All beta proteins (27)
	Artifacts (8)
	Alpha and beta proteins (a/b) (1)
	All alpha proteins (1)

AllSelected

1 to 25 of 117 Polymer Entities

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1NU3: Entity 1	Download File View File

Limonene-1,2-epoxide hydrolase in complex with valpromide

Arand, M., Hallberg, B.M., Zou, J., Bergfors, T., Oesch, F., van der Werf, M.J., de Bont, J.A.M., Jones, T.A., Mowbray, S.L.

(2003) EMBO J 22: 2583-2592

Released	2003-06-10
Method	X-RAY DIFFRACTION 1.75 Å
Chain IDs	A, B
Organism	Rhodococcus erythropolis
Macromolecule	limonene-1,2-epoxide hydrolase

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1NWW: Entity 1	Download File View File

Limonene-1,2-epoxide hydrolase

Arand, M., Hallberg, B.M., Zou, J., Bergfors, T., Oesch, F., van der Werf, M.J., de Bont, J.A.M., Jones, T.A., Mowbray, S.L.

(2003) EMBO J 22: 2583-2592

Released	2003-06-10
Method	X-RAY DIFFRACTION 1.2 Å
Chain IDs	A, B
Organism	Rhodococcus erythropolis
Macromolecule	Limonene-1,2-epoxide hydrolase

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1O8U: Entity 1	Download File View File

The 2 Angstrom Structure of 6-Oxo Camphor Hydrolase: New Structural Diversity in the Crotonase Superfamily

Grogan, G., Whittingham, J.L., Turkenburg, J.P., Verma, C.S., Walsh, M.A.

(2003) J Biological Chem 278: 1744

Released	2003-01-24
Method	X-RAY DIFFRACTION 2 Å
Chain IDs	A, B, C, D, E
Organism	Rhodococcus erythropolis
Macromolecule	6-OXO CAMPHOR HYDROLASE

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1Q5Q: Entity 1	Download File View File

The Rhodococcus 20S proteasome

Kwon, Y.D., Nagy, I., Adams, P.D., Baumeister, W., Jap, B.K.

(2004) J Mol Biology 335: 233-245

Released	2003-12-16
Method	X-RAY DIFFRACTION 2.6 Å
Chain IDs	A, B, C, D, E
Organism	Rhodococcus erythropolis
Macromolecule	proteasome alpha-type subunit 1

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1Q5Q: Entity 2	Download File View File

The Rhodococcus 20S proteasome

Kwon, Y.D., Nagy, I., Adams, P.D., Baumeister, W., Jap, B.K.

(2004) J Mol Biology 335: 233-245

Released	2003-12-16
Method	X-RAY DIFFRACTION 2.6 Å
Chain IDs	H, I, J, K, L
Organism	Rhodococcus erythropolis
Macromolecule	proteasome beta-type subunit 1

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1Q5R: Entity 1	Download File View File

The Rhodococcus 20S proteasome with unprocessed pro-peptides

Kwon, Y.D., Nagy, I., Adams, P.D., Baumeister, W., Jap, B.K.

(2004) J Mol Biology 335: 233-245

Released	2003-12-16
Method	X-RAY DIFFRACTION 3.1 Å
Chain IDs	A, B, C, D, E
Organism	Rhodococcus erythropolis
Macromolecule	proteasome alpha-type subunit 1

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1Q5R: Entity 2	Download File View File

The Rhodococcus 20S proteasome with unprocessed pro-peptides

Kwon, Y.D., Nagy, I., Adams, P.D., Baumeister, W., Jap, B.K.

(2004) J Mol Biology 335: 233-245

Released	2003-12-16
Method	X-RAY DIFFRACTION 3.1 Å
Chain IDs	H, I, J, K, L
Organism	Rhodococcus erythropolis
Macromolecule	proteasome beta-type subunit 1

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2AHJ: Entity 1	Download File View File

NITRILE HYDRATASE COMPLEXED WITH NITRIC OXIDE

Nagashima, S., Nakasako, M., Dohmae, N., Tsujimura, M., Takio, K., Odaka, M., Yohda, M., Kamiya, N., Endo, I.

(1998) Nat Struct Biol 5: 347-351

Released	1999-01-27
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	A, C
Organism	Rhodococcus erythropolis
Macromolecule	NITRILE HYDRATASE

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2AHJ: Entity 2	Download File View File

NITRILE HYDRATASE COMPLEXED WITH NITRIC OXIDE

Nagashima, S., Nakasako, M., Dohmae, N., Tsujimura, M., Takio, K., Odaka, M., Yohda, M., Kamiya, N., Endo, I.

(1998) Nat Struct Biol 5: 347-351

Released	1999-01-27
Method	X-RAY DIFFRACTION 1.7 Å
Chain IDs	B, D
Organism	Rhodococcus erythropolis
Macromolecule	NITRILE HYDRATASE

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2CYZ: Entity 1	Download File View File

photo-activation state of Fe-type NHase in anaerobic condition

Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-09
Method	X-RAY DIFFRACTION 1.55 Å
Chain ID	A
Organism	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit alpha

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2CYZ: Entity 2	Download File View File

photo-activation state of Fe-type NHase in anaerobic condition

Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-09
Method	X-RAY DIFFRACTION 1.55 Å
Chain ID	B
Organism	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit beta

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2CZ0: Entity 1	Download File View File

photo-activation state of Fe-type NHase in aerobic condition

Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-09
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	A
Organism	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit alpha

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2CZ0: Entity 2	Download File View File

photo-activation state of Fe-type NHase in aerobic condition

Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-09
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	B
Organism	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit beta

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2CZ1: Entity 1	Download File View File

photo-activation state of Fe-type NHase with n-BA in anaerobic condition

Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-09
Method	X-RAY DIFFRACTION 1.39 Å
Chain ID	A
Organism	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit alpha

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2CZ1: Entity 2	Download File View File

photo-activation state of Fe-type NHase with n-BA in anaerobic condition

Kawano, Y., Hashimoto, K., Odaka, M., Nakayama, H., Takio, K., Endo, I., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-09
Method	X-RAY DIFFRACTION 1.39 Å
Chain ID	B
Organism	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit beta

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2CZ6: Entity 1	Download File View File

Complex of Inactive Fe-type NHase with Cyclohexyl isocyanide

Nojiri, M., Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-11
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	A
Organism	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit alpha

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2CZ6: Entity 2	Download File View File

Complex of Inactive Fe-type NHase with Cyclohexyl isocyanide

Nojiri, M., Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-11
Method	X-RAY DIFFRACTION 1.5 Å
Chain ID	B
Organism	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit beta

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2CZ7: Entity 1	Download File View File

Fe-type NHase photo-activated for 75min at 105K

Nojiri, M., Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-11
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	A
Organism	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit alpha

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2CZ7: Entity 2	Download File View File

Fe-type NHase photo-activated for 75min at 105K

Nojiri, M., Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-01-11
Method	X-RAY DIFFRACTION 1.8 Å
Chain ID	B
Organism	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit beta

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2D0Q: Entity 1	Download File View File

Complex of Fe-type NHase with Cyclohexyl isocyanide, photo-activated for 1hr at 277K

Nojiri, M., Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-02-05
Method	X-RAY DIFFRACTION 1.65 Å
Chain ID	A
Organism	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit alpha

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2D0Q: Entity 2	Download File View File

Complex of Fe-type NHase with Cyclohexyl isocyanide, photo-activated for 1hr at 277K

Nojiri, M., Kawano, Y., Hashimoto, K., Kamiya, N., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

To be published

Released	2006-02-05
Method	X-RAY DIFFRACTION 1.65 Å
Chain ID	B
Organism	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit beta

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2H6J: Entity 1	Download File View File

Crystal Structure of the Beta F145A Rhodococcus Proteasome

Kwon, Y.D.

(2006) Structure 14: 1179-1188

Released	2006-08-01
Method	X-RAY DIFFRACTION 3.2 Å
Chain IDs	A, B, C, D, E
Organism	Rhodococcus erythropolis
Macromolecule	Proteasome alpha-type subunit 1

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2H6J: Entity 2	Download File View File

Crystal Structure of the Beta F145A Rhodococcus Proteasome

Kwon, Y.D.

(2006) Structure 14: 1179-1188

Released	2006-08-01
Method	X-RAY DIFFRACTION 3.2 Å
Chain IDs	H, I, J, K, L
Organism	Rhodococcus erythropolis
Macromolecule	Proteasome beta-type subunit 1

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2QDY: Entity 1	Download File View File

Crystal Structure of Fe-type NHase from Rhodococcus erythropolis AJ270

Song, L., Shi, J., Xue, Z., Wang, M.-X., Qian, S.

(2007) Biochem Biophys Res Commun 362: 319-324

Released	2008-05-13
Method	X-RAY DIFFRACTION 1.3 Å
Chain ID	A
Organism	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit alpha

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2QDY: Entity 2	Download File View File

Crystal Structure of Fe-type NHase from Rhodococcus erythropolis AJ270

Song, L., Shi, J., Xue, Z., Wang, M.-X., Qian, S.

(2007) Biochem Biophys Res Commun 362: 319-324

Released	2008-05-13
Method	X-RAY DIFFRACTION 1.3 Å
Chain ID	B
Organism	Rhodococcus erythropolis
Macromolecule	Nitrile hydratase subunit beta

1 to 25 of 117 Polymer Entities

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification