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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Human herpesvirus 5 strain AD169"

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Search Summary

This query matches 41 Structures.

Refinements

Structure Determination Methodology

experimental (41)

Scientific Name of Source Organism

	Human herpesvirus 5 strain AD169 (38)
	Homo sapiens (15)
	Human cytomegalovirus (strain AD169) (3)
	Human herpesvirus 5 strain 5508 (3)
	Human herpesvirus 5 strain Merlin (3)
	Human betaherpesvirus 5 (2)
	Mus musculus (1)

Taxonomy

	Duplodnaviria (41)
	Eukaryota (15)

Experimental Method

	X-RAY DIFFRACTION (26)
	ELECTRON MICROSCOPY (12)
	SOLUTION NMR (3)

Polymer Entity Type

	Protein (41)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (4)
	2.0 - 2.5 (8)
	2.5 - 3.0 (7)
	3.0 - 3.5 (8)
	3.5 - 4.0 (6)
	4.0 - 4.5 (2)
	> 4.5 (2)

Release Date

	2000 - 2004 (5)
	2005 - 2009 (3)
	2010 - 2014 (2)
	2015 - 2019 (15)
	2020 - 2024 (16)

Enzyme Classification Name

	Hydrolases (12)
	Transferases (2)

Membrane Protein Annotation

	MemProtMD (2)
	OPM (1)
	PDBTM (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (27)
	Cyclic (14)
	Icosahedral (1)

SCOP Classification

	All beta proteins (8)
	Alpha and beta proteins (a+b) (6)
	Artifacts (2)

AllSelected

1 to 25 of 41 Structures

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1ID4 \| pdb_00001id4	Download File View File

CRYSTAL STRUCTURE OF THE CATALYTIC SITE MUTANT (H157Q) OF THE HUMAN CYTOMEGALOVIRUS PROTEASE

Khayat, R., Batra, R., Massariol, M.J., Lagace, L., Tong, L.

(2001) Biochemistry 40: 6344-6351

Released	2001-06-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	CAPSID PROTEIN P40: ASSEMBLIN PROTEASE (protein)

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1IEC \| pdb_00001iec	Download File View File

CRYSTAL STRUCTURE OF THE CATALYTIC SITE MUTANT (H157A) OF THE HUMAN CYTOMEGALOVIRUS PROTEASE

Khayat, R., Batra, R., Massariol, M.J., Lagace, L., Tong, L.

(2001) Biochemistry 40: 6344-6351

Released	2001-06-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	CAPSID PROTEIN P40: ASSEMBLIN PROTEASE (protein)

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1IED \| pdb_00001ied	Download File View File

CRYSTAL STRUCTURE OF THE CATALYTIC SITE MUTANT (H157E) OF THE HUMAN CYTOMEGALOVIRUS PROTEASE

Khayat, R., Batra, R., Massariol, M.J., Lagace, L., Tong, L.

(2001) Biochemistry 40: 6344-6351

Released	2001-06-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	CAPSID PROTEIN P40: ASSEMBLIN PROTEASE (protein)

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1IEF \| pdb_00001ief	Download File View File

CRYSTAL STRUCTURE OF THE CATALYTIC SITE MUTANT S134A OF THE HUMAN CYTOMEGALOVIRUS PROTEASE

Khayat, R., Batra, R., Massariol, M.J., Lagace, L., Tong, L.

(2001) Biochemistry 40: 6344-6351

Released	2001-06-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	CAPSID PROTEIN P40: ASSEMBLIN PROTEASE (protein)

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1IEG \| pdb_00001ieg	Download File View File

CRYSTAL STRUCTURE OF THE CATALYTIC SITE MUTANT S134A/H157A OF THE HUMAN CYTOMEGALOVIRUS PROTEASE

Khayat, R., Batra, R., Massariol, M.J., Lagace, L., Tong, L.

(2001) Biochemistry 40: 6344-6351

Released	2001-06-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	CAPSID PROTEIN P40: ASSEMBLIN PROTEASE (protein)

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1YYP \| pdb_00001yyp	Download File View File

Crystal structure of cytomegalovirus UL44 bound to C-terminal peptide from CMV UL54

Appleton, B.A., Brooks, J., Loregian, A., Filman, D.J., Coen, D.M., Hogle, J.M.

(2006) J Biological Chem 281: 5224-5232

Released	2005-12-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human betaherpesvirus 5 Human cytomegalovirus (strain AD169)
Macromolecule	DNA polymerase (protein) DNA polymerase processivity factor (protein)
Unique Ligands	EDO, SO4

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2ESV \| pdb_00002esv	Download File View File

Structure of the HLA-E-VMAPRTLIL/KK50.4 TCR complex

Hoare, H.L., Rossjohn, J.

(2006) Nat Immunol 7: 256-264

Released	2006-03-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Human cytomegalovirus (strain AD169)
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, alpha chain E (protein) KK50.4 T cell receptor alpha chain (protein) KK50.4 T cell receptor beta chain (protein) VMAPRTLIL peptide from CMV gpUL40 (protein)
Unique Ligands	IOD

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2LR1 \| pdb_00002lr1	Download File View File

Structural Mechanism for Bax Inhibition by Cytomegalovirus Protein vMIA

Ma, J.

(2012) Proc Natl Acad Sci U S A 109: 20901-20906

Released	2012-12-05
Method	SOLUTION NMR
Organisms	Homo sapiens Human herpesvirus 5 strain AD169
Macromolecule	Apoptosis regulator BAX (protein) Immediate early glycoprotein (protein)

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2WY3 \| pdb_00002wy3	Download File View File

Structure of the HCMV UL16-MICB complex elucidates select binding of a viral immunoevasin to diverse NKG2D ligands

Mueller, S., Zocher, G., Steinle, A., Stehle, T.

(2010) PLoS Pathog 6: 723

Released	2010-02-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens Human herpesvirus 5 strain AD169
Macromolecule	MHC CLASS I POLYPEPTIDE-RELATED SEQUENCE B (protein) UNCHARACTERIZED PROTEIN UL16 (protein)
Unique Ligands	ACT, NAG, PEU

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3GSO \| pdb_00003gso	Download File View File

Crystal structure of the binary complex between HLA-A2 and HCMV NLV peptide

Gras, S., Saulquin, X., Reiser, J.-B., Debeaupuis, E., Echasserieau, K., Kissenpfennig, A., Legoux, F., Chouquet, A., Le Gorrec, M., Machillot, P., Neveu, B., Thielens, N., Malissen, B., Bonneville, M., Housset, D.

(2009) J Immunol 183: 430-437

Released	2009-08-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Human cytomegalovirus (strain AD169)
Macromolecule	Beta-2-microglobulin (protein) HCMV pp65 fragment 495-503 (NLVPMVATV) (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein)

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5CXF \| pdb_00005cxf	Download File View File

Crystal structure of the extracellular domain of glycoprotein B from Human Cytomegalovirus

Burke, H.G., Heldwein, E.E.

(2015) PLoS Pathog 11: e1005227-e1005227

Released	2015-10-28
Method	X-RAY DIFFRACTION 3.602 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	Envelope glycoprotein B (protein)
Unique Ligands	CA, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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5D5N \| pdb_00005d5n	Download File View File

Crystal Structure of the Human Cytomegalovirus pUL50-pUL53 Complex

Walzer, S.A., Egerer-Sieber, C., Hohl, K., Sevvana, M., Muller, Y.A.

(2015) J Biological Chem 290: 27452-27458

Released	2015-10-07
Method	X-RAY DIFFRACTION 2.44 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	Virion egress protein UL31 homolog (protein) Virion egress protein UL34 homolog (protein)
Unique Ligands	ZN

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5DOB \| pdb_00005dob	Download File View File

Crystal structure of the Human Cytomegalovirus Nuclear Egress Complex (NEC)

Lye, M.F., El Omari, K., Filman, D.J., Hogle, J.M.

(2015) EMBO J 34: 2937-2952

Released	2015-11-25
Method	X-RAY DIFFRACTION 2.47 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	Virion egress protein UL31 homolog (protein) Virion egress protein UL34 homolog (protein)
Unique Ligands	CA, ZN

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5DOC \| pdb_00005doc	Download File View File

Crystal structure of the Human Cytomegalovirus UL53 subunit of the NEC

Lye, M.F., El Omari, K., Filman, D.J., Hogle, J.M.

(2015) EMBO J 34: 2937-2952

Released	2015-11-25
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	Virion egress protein UL31 homolog (protein)
Unique Ligands	GOL, ZN

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5DOE \| pdb_00005doe	Download File View File

Crystal structure of the Human Cytomegalovirus UL53 (residues 72-292)

Lye, M.F., El Omari, K., Filman, D.J., Hogle, J.M.

(2015) EMBO J 34: 2937-2952

Released	2015-11-25
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	Virion egress protein UL31 homolog (protein)
Unique Ligands	ZN

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5IWD \| pdb_00005iwd	Download File View File

HCMV DNA polymerase subunit UL44 complex with a small molecule

Chen, H., Coen, D.M., Hogle, J.M., Filman, D.J.

(2017) ACS Infect Dis 3: 112-118

Released	2016-11-30
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	DNA polymerase processivity factor (protein)
Unique Ligands	6EV

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5IXA \| pdb_00005ixa	Download File View File

HCMV DNA polymerase processivity subunit UL44 at neutral pH and low salt

Chen, H., Coen, D.M., Hogle, J.M., Filman, D.J.

(2017) ACS Infect Dis 3: 112-118

Released	2016-11-30
Method	X-RAY DIFFRACTION 2.684 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	DNA polymerase processivity factor (protein)

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5VKU \| pdb_00005vku	Download File View File

An atomic structure of the human cytomegalovirus (HCMV) capsid with its securing layer of pp150 tegument protein

Yu, X., Jih, J., Jiang, J., Zhou, H.

(2017) Science 356:

Released	2017-06-28
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	Major capsid protein (protein) Small capsomere-interacting protein (protein) Tegument protein pp150 (protein) Triplex capsid protein 1 (protein) Triplex capsid protein 2 (protein)

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5VOB \| pdb_00005vob	Download File View File

Crystal structure of HCMV Pentamer in complex with neutralizing antibody 8I21

Malito, E., Chandramouli, S.

(2017) Sci Immunol 2:

Released	2017-07-05
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Homo sapiens Human herpesvirus 5 strain 5508 Human herpesvirus 5 strain AD169 Human herpesvirus 5 strain Merlin
Macromolecule	Unique protein chains: 7
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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5VOC \| pdb_00005voc	Download File View File

Crystal structure of HCMV Pentamer in complex with neutralizing antibody 8I21 - Low resolution dataset for initial phasing by SAD

Malito, E., Chandramouli, S.

(2017) Sci Immunol 2:

Released	2017-07-05
Method	X-RAY DIFFRACTION 3.99 Å
Organisms	Homo sapiens Human herpesvirus 5 strain 5508 Human herpesvirus 5 strain AD169 Human herpesvirus 5 strain Merlin
Macromolecule	Unique protein chains: 7
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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5VOD \| pdb_00005vod	Download File View File

Crystal structure of HCMV Pentamer in complex with neutralizing antibody 9I6

Malito, E., Chandramouli, S.

(2017) Sci Immunol 2:

Released	2017-07-05
Method	X-RAY DIFFRACTION 5.9 Å
Organisms	Homo sapiens Human herpesvirus 5 strain 5508 Human herpesvirus 5 strain AD169 Human herpesvirus 5 strain Merlin
Macromolecule	Unique protein chains: 7
Unique branched monosaccharides	BMA, MAN, NAG

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5W1V \| pdb_00005w1v	Download File View File

Structure of the HLA-E-VMAPRTLIL/GF4 TCR complex

Gras, S., Walpole, N., Farenc, C., Rossjohn, J.

(2017) J Biological Chem 292: 21149-21158

Released	2017-10-04
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Homo sapiens Human herpesvirus 5 strain AD169
Macromolecule	Beta-2-microglobulin (protein) GF4 T cell receptor alpha chain (protein) GF4 T cell receptor beta chain (protein) HLA class I histocompatibility antigen, alpha chain E (protein) VMAPRTLIL peptide from CMV gpUL40 (protein)

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6EY7 \| pdb_00006ey7	Download File View File

Human cytomegalovirus terminase nuclease domain, Mn soaked, inhibitor bound

Bongarzone, S., Nadal, M., Kaczmarska, Z., Machon, C., Alvarez, M., Albericio, F., Coll, M.

(2018) ACS Omega 3: 8497-8505

Released	2018-10-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Human herpesvirus 5 strain AD169
Macromolecule	UL89 HCMV terminase (protein)
Unique Ligands	C3W, CL, MN

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6K5R \| pdb_00006k5r	Download File View File

Complex of SUMO2 with Phosphorylated viral SIM IE2

Chatterjee, K.S., Das, R.

(2019) J Biological Chem 294: 14546-14561

Released	2019-08-07
Method	SOLUTION NMR
Organisms	Homo sapiens Human herpesvirus 5 strain AD169
Macromolecule	ASP-THR-ALA-GLY-CYS-ILE-VAL-ILE-SEP-ASP-SEP-GLU (protein) Small ubiquitin-related modifier 3 (protein)

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6K5T \| pdb_00006k5t	Download File View File

Complex of SUMO1 and phosphorylated hcmv protein IE2

Tripathi, V., Chatterjee, K.S.

(2019) J Biological Chem 294: 14546-14561

Released	2019-08-07
Method	SOLUTION NMR
Organisms	Homo sapiens Human herpesvirus 5 strain AD169
Macromolecule	12-mer from Viral transcription factor IE2 (protein) Small ubiquitin-related modifier 1 (protein)

1 to 25 of 41 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1ID4 | pdb_00001id4

1IEC | pdb_00001iec

1IED | pdb_00001ied

1IEF | pdb_00001ief

1IEG | pdb_00001ieg

1YYP | pdb_00001yyp

2ESV | pdb_00002esv

2LR1 | pdb_00002lr1

2WY3 | pdb_00002wy3

3GSO | pdb_00003gso

5CXF | pdb_00005cxf

5D5N | pdb_00005d5n

5DOB | pdb_00005dob

5DOC | pdb_00005doc

5DOE | pdb_00005doe

5IWD | pdb_00005iwd

5IXA | pdb_00005ixa

5VKU | pdb_00005vku

5VOB | pdb_00005vob

5VOC | pdb_00005voc

5VOD | pdb_00005vod

5W1V | pdb_00005w1v

6EY7 | pdb_00006ey7

6K5R | pdb_00006k5r

6K5T | pdb_00006k5t