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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Human herpesvirus 5 strain Merlin"

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Search Summary

This query matches 8 Structures.

Refinements

Structure Determination Methodology

experimental (8)

Scientific Name of Source Organism

	Human herpesvirus 5 strain Merlin (8)
	Homo sapiens (7)
	Human betaherpesvirus 5 (3)
	Human herpesvirus 5 strain 5508 (3)
	Human herpesvirus 5 strain AD169 (3)

Taxonomy

	Duplodnaviria (8)
	Eukaryota (7)

Experimental Method

	X-RAY DIFFRACTION (5)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

Protein (8)

Refinement Resolution (Å)

	2.0 - 2.5 (1)
	2.5 - 3.0 (3)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)
	> 4.5 (1)

Release Date

	2010 - 2014 (2)
	2015 - 2019 (3)
	2020 - 2024 (3)

Enzyme Classification Name

Transferases (1)

Symmetry Type

	Asymmetric (6)
	Cyclic (3)

SCOP Classification

	All beta proteins (4)
	Small proteins (1)

AllSelected

1 to 8 of 8 Structures

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Explore in 3D

4I9X \| pdb_00004i9x	Download File View File

Crystal structure of human cytomegalovirus glycoprotein UL141 targeting the death receptor TRAIL-R2

Nemcovicova, I., Zajonc, D.M.

(2013) PLoS Pathog 9: e1003224-e1003224

Released	2013-04-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Human herpesvirus 5 strain Merlin
Macromolecule	Protein UL141 (protein) Tumor necrosis factor receptor superfamily member 10B (protein)
Unique Ligands	CA, NA, NAG
Unique branched monosaccharides	NAG

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4JM0 \| pdb_00004jm0	Download File View File

Structure of Human Cytomegalovirus Immune Modulator UL141

Nemcovicova, I., Zajonc, D.M.

(2014) Acta Crystallogr D Biol Crystallogr 70: 851-862

Released	2014-02-26
Method	X-RAY DIFFRACTION 3.25 Å
Organisms	Human herpesvirus 5 strain Merlin
Macromolecule	Protein UL141 (protein)
Unique branched monosaccharides	NAG

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5VOB \| pdb_00005vob	Download File View File

Crystal structure of HCMV Pentamer in complex with neutralizing antibody 8I21

Malito, E., Chandramouli, S.

(2017) Sci Immunol 2:

Released	2017-07-05
Method	X-RAY DIFFRACTION 3.02 Å
Organisms	Homo sapiens Human herpesvirus 5 strain 5508 Human herpesvirus 5 strain AD169 Human herpesvirus 5 strain Merlin
Macromolecule	Unique protein chains: 7
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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5VOC \| pdb_00005voc	Download File View File

Crystal structure of HCMV Pentamer in complex with neutralizing antibody 8I21 - Low resolution dataset for initial phasing by SAD

Malito, E., Chandramouli, S.

(2017) Sci Immunol 2:

Released	2017-07-05
Method	X-RAY DIFFRACTION 3.99 Å
Organisms	Homo sapiens Human herpesvirus 5 strain 5508 Human herpesvirus 5 strain AD169 Human herpesvirus 5 strain Merlin
Macromolecule	Unique protein chains: 7
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG

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5VOD \| pdb_00005vod	Download File View File

Crystal structure of HCMV Pentamer in complex with neutralizing antibody 9I6

Malito, E., Chandramouli, S.

(2017) Sci Immunol 2:

Released	2017-07-05
Method	X-RAY DIFFRACTION 5.9 Å
Organisms	Homo sapiens Human herpesvirus 5 strain 5508 Human herpesvirus 5 strain AD169 Human herpesvirus 5 strain Merlin
Macromolecule	Unique protein chains: 7
Unique branched monosaccharides	BMA, MAN, NAG

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7LBE \| pdb_00007lbe	Download File View File

CryoEM structure of the HCMV Trimer gHgLgO in complex with neutralizing fabs 13H11 and MSL-109

Kschonsak, M., Rouge, L., Arthur, C.P., Hoangdung, H., Patel, N., Kim, I., Johnson, M., Kraft, E., Rohou, A.L., Gill, A., Martinez-Martin, N., Payandeh, J., Ciferri, C.

(2021) Cell 184: 1232

Released	2021-03-10
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Homo sapiens Human betaherpesvirus 5 Human herpesvirus 5 strain Merlin
Macromolecule	Unique protein chains: 7
Unique Ligands	MAN, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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7LBF \| pdb_00007lbf	Download File View File

CryoEM structure of the HCMV Trimer gHgLgO in complex with human Platelet-derived growth factor receptor alpha and neutralizing fabs 13H11 and MSL-109

Kschonsak, M., Rouge, L., Arthur, C.P., Hoangdung, H., Patel, N., Kim, I., Johnson, M., Kraft, E., Rohou, A.L., Gill, A., Martinez-Martin, N., Payandeh, J., Ciferri, C.

(2021) Cell 184: 1232

Released	2021-03-10
Method	ELECTRON MICROSCOPY 2.8 Å
Organisms	Homo sapiens Human betaherpesvirus 5 Human herpesvirus 5 strain Merlin
Macromolecule	Unique protein chains: 8
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

Explore in 3D

7LBG \| pdb_00007lbg	Download File View File

CryoEM structure of the HCMV Trimer gHgLgO in complex with human Transforming growth factor beta receptor type 3 and neutralizing fabs 13H11 and MSL-109

Kschonsak, M., Rouge, L., Arthur, C.P., Hoangdung, H., Patel, N., Kim, I., Johnson, M., Kraft, E., Rohou, A.L., Gill, A., Martinez-Martin, N., Payandeh, J., Ciferri, C.

(2021) Cell 184: 1232

Released	2021-03-10
Method	ELECTRON MICROSCOPY 2.6 Å
Organisms	Homo sapiens Human betaherpesvirus 5 Human herpesvirus 5 strain Merlin
Macromolecule	Unique protein chains: 8
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

1 to 8 of 8 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

4I9X | pdb_00004i9x

Crystal structure of human cytomegalovirus glycoprotein UL141 targeting the death receptor TRAIL-R2

4JM0 | pdb_00004jm0

Structure of Human Cytomegalovirus Immune Modulator UL141

5VOB | pdb_00005vob

Crystal structure of HCMV Pentamer in complex with neutralizing antibody 8I21

5VOC | pdb_00005voc

Crystal structure of HCMV Pentamer in complex with neutralizing antibody 8I21 - Low resolution dataset for initial phasing by SAD

5VOD | pdb_00005vod

Crystal structure of HCMV Pentamer in complex with neutralizing antibody 9I6

7LBE | pdb_00007lbe

CryoEM structure of the HCMV Trimer gHgLgO in complex with neutralizing fabs 13H11 and MSL-109

7LBF | pdb_00007lbf

CryoEM structure of the HCMV Trimer gHgLgO in complex with human Platelet-derived growth factor receptor alpha and neutralizing fabs 13H11 and MSL-109

7LBG | pdb_00007lbg

CryoEM structure of the HCMV Trimer gHgLgO in complex with human Transforming growth factor beta receptor type 3 and neutralizing fabs 13H11 and MSL-109

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4I9X | pdb_00004i9x

4JM0 | pdb_00004jm0

5VOB | pdb_00005vob

5VOC | pdb_00005voc

5VOD | pdb_00005vod

7LBE | pdb_00007lbe

7LBF | pdb_00007lbf

7LBG | pdb_00007lbg