RCSB PDB: Search

1AKJ \| pdb_00001akj	Download File View File

COMPLEX OF THE HUMAN MHC CLASS I GLYCOPROTEIN HLA-A2 AND THE T CELL CORECEPTOR CD8

Tormo, J., Stuart, D.I., Jones, E.Y.

(1997) Nature 387: 630-634

Released	1997-09-17
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	BETA 2-MICROGLOBULIN (protein) HIV REVERSE TRANSCRIPTASE EPITOPE (protein) MHC CLASS I HISTOCOMPATIBILITY ANTIGEN (HLA-A*0201) (ALPHA CHAIN) (protein) T-CELL CORECEPTOR CD8 (protein)

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1CZQ \| pdb_00001czq	Download File View File

CRYSTAL STRUCTURE OF THE D10-P1/IQN17 COMPLEX: A D-PEPTIDE INHIBITOR OF HIV-1 ENTRY BOUND TO THE GP41 COILED-COIL POCKET.

Eckert, D.M., Malashkevich, V.N., Hong, L.H., Carr, P.A., Kim, P.S.

(1999) Cell 99: 103-115

Released	1999-10-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Human immunodeficiency virus Saccharomyces cerevisiae
Macromolecule	D-PEPTIDE INHIBITOR (protein) FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF HIV GP41 AND GCN4-PIQI (protein)
Unique Ligands	CL

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1D4H \| pdb_00001d4h	Download File View File

HIV-1 Protease in complex with the inhibitor BEA435

Unge, T.

(2003) Eur J Biochem 270: 1746-1758

Released	2002-06-26
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Human immunodeficiency virus
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	BEH

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1D4I \| pdb_00001d4i	Download File View File

HIV-1 protease in complex with the inhibitor BEA425

Unge, T.

(2003) Eur J Biochem 270: 1746-1758

Released	2002-06-26
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Human immunodeficiency virus
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	BEG

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1D4J \| pdb_00001d4j	Download File View File

HIV-1 protease in complex with the inhibitor MSL370

Unge, T.

(2003) Eur J Biochem 270: 1746-1758

Released	2002-06-26
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Human immunodeficiency virus
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	MSC

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1GZL \| pdb_00001gzl	Download File View File

Crystal structure of C14linkmid/IQN17: a cross-linked inhibitor of HIV-1 entry bound to the gp41 hydrophobic pocket

Sia, S.K., Carr, P.A., Cochran, A.G., Malashkevich, V.M., Kim, P.S.

(2002) Proc Natl Acad Sci U S A 99: 14664

Released	2002-10-10
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus Human immunodeficiency virus 1 Saccharomyces cerevisiae
Macromolecule	ENVELOPE GLYCOPROTEIN GP41 (protein) FUSION PROTEIN BETWEEN THE HYDROPHOBIC POCKET OF HIV GP41 AND GENERAL CONTROL PROTEIN GCN4-PIQI (protein)
Unique Ligands	CL, N2P

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1KZK \| pdb_00001kzk	Download File View File

JE-2147-HIV Protease Complex

Reiling, K.K., Endres, N.F., Dauber, D.S., Craik, C.S., Stroud, R.M.

(2002) Biochemistry 41: 4582-4594

Released	2002-04-03
Method	X-RAY DIFFRACTION 1.09 Å
Organisms	Human immunodeficiency virus
Macromolecule	Protease (protein)
Unique Ligands	CL, EDO, JE2

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1MFS \| pdb_00001mfs	Download File View File

DYNAMICAL BEHAVIOR OF THE HIV-1 NUCLEOCAPSID PROTEIN; NMR, 30 STRUCTURES

Summers, M.F., Turner, B.G., De Guzman, R.N., Lee, B.M., Tjandra, N.

(1998) J Mol Biology 279: 633-649

Released	1998-06-17
Method	SOLUTION NMR
Organisms	Human immunodeficiency virus
Macromolecule	HIV-1 NUCLEOCAPSID PROTEIN (protein)
Unique Ligands	ZN

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1QO3 \| pdb_00001qo3	Download File View File

Complex between NK cell receptor Ly49A and its MHC class I ligand H-2Dd

Tormo, J., Mariuzza, R.A.

(1999) Nature 402: 623

Released	2000-01-02
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human immunodeficiency virus Mus musculus
Macromolecule	BETA-2-MICROGLOBULIN (protein) HIV ENVELOPE GLYCOPROTEIN 120 PEPTIDE (protein) LY49A (protein) MHC CLASS I H-2DD HEAVY CHAIN (protein)
Unique Ligands	EDO

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1W5V \| pdb_00001w5v	Download File View File

HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor

Lindberg, J., Pyring, D., Loewgren, S., Rosenquist, A., Zuccarello, G., Kvarnstroem, I., Zhang, H., Vrang, L., Claesson, B., Hallberg, A., Samuelsson, B., Unge, T.

(2004) Eur J Biochem 271: 4594

Released	2004-12-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	BE3

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1W5W \| pdb_00001w5w	Download File View File

HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor

Lindberg, J., Pyring, D., Loewgren, S., Rosenquist, A., Zuccarello, G., Kvarnstroem, I., Zhang, H., Vrang, L., Claesson, B., Hallberg, A., Samuelsson, B., Unge, T.

(2004) Eur J Biochem 271: 4594

Released	2004-12-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus
Macromolecule	POL POLYPROTEIN (protein)
Unique Ligands	BE4

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1W5X \| pdb_00001w5x	Download File View File

HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor

Lindberg, J., Pyring, D., Loewgren, S., Rosenquist, A., Zuccarello, G., Kvarnstroem, I., Zhang, H., Vrang, L., Claesson, B., Hallberg, A., Samuelsson, B., Unge, T.

(2004) Eur J Biochem 271: 4594

Released	2004-12-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Human immunodeficiency virus
Macromolecule	POL POLYPROTEIN (protein)
Unique Ligands	BE5

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1W5Y \| pdb_00001w5y	Download File View File

HIV-1 protease in complex with fluoro substituted diol-based C2- symmetric inhibitor

Lindberg, J., Pyring, D., Loewgren, S., Rosenquist, A., Zuccarello, G., Kvarnstroem, I., Zhang, H., Vrang, L., Claesson, B., Hallberg, A., Samuelsson, B., Unge, T.

(2004) Eur J Biochem 271: 4594

Released	2004-10-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Human immunodeficiency virus
Macromolecule	POL POLYPROTEIN (protein)
Unique Ligands	BE6

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2BSS \| pdb_00002bss	Download File View File

Crystal structures and KIR3DL1 recognition of three immunodominant viral peptides complexed to HLA-B2705

Stewart-Jones, G.B.E., Di Gleria, K., Kollnberger, S., Mcmichael, A.J., Jones, E.Y., Bowness, P.

(2005) Eur J Immunol 35: 341

Released	2005-05-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) HIV PEPTIDE (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN B-27 ALPHA CHAIN (protein)

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2BVP \| pdb_00002bvp	Download File View File

Structures of Three HIV-1 HLA-B5703-Peptide Complexes and Identification of Related HLAs Potentially Associated with Long-Term Non-Progression

Stewart-Jones, G.B., Gillespie, G., Overton, I.M., Kaul, R., Roche, P., Mcmichael, A.J., Rowland-Jones, S., Jones, E.Y.

(2005) J Immunol 175: 2459-2468

Released	2005-09-07
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) HIV-P24 (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN (protein)

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2BVQ \| pdb_00002bvq	Download File View File

Structures of Three HIV-1 HLA-B5703-Peptide Complexes and Identification of Related HLAs Potentially Associated with Long-Term Non-Progression

Stewart-Jones, G.B., Gillespie, G., Overton, I.M., Kaul, R., Roche, P., Mcmichael, A.J., Rowland-Jones, S., Jones, E.Y.

(2005) J Immunol 175: 2459-2468

Released	2005-09-07
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) HIV-P24 (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN (protein)

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2I5Y \| pdb_00002i5y	Download File View File

Crystal structure of CD4M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B

Huang, C.-C., Kwong, P.D.

(2008) J Mol Biology 382: 510-524

Released	2006-10-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Human immunodeficiency virus synthetic construct
Macromolecule	Antibody 17B Heavy chain (protein) Antibody 17B Light chain (protein) CD4M47, SCORPION-TOXIN MIMIC OF CD4 (protein) Exterior membrane glycoprotein(GP120) (protein)
Unique Ligands	NAG

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2V2W \| pdb_00002v2w	Download File View File

T CELL CROSS-REACTIVITY AND CONFORMATIONAL CHANGES DURING TCR ENGAGEMENT

Lee, J.K., Stewart-Jones, G., Dong, T., Harlos, K., Di Gleria, K., Dorrell, L., Douek, D.C., Van Der Merwe, P.A., Jones, E.Y., Mcmichael, A.J.

(2004) J Exp Medicine 200: 1455

Released	2007-11-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	BETA-2 MICROGLOBULIN (protein) HIV P17 (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein)

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2V2X \| pdb_00002v2x	Download File View File

T cell cross-reactivity and conformational changes during TCR engagement.

Lee, J.K., Stewart-Jones, G., Dong, T., harlos, K., Di Gleria, K., Dorrell, L., Douek, D.C., van der Merwe, P.A., Jones, E.Y., McMichael, A.J.

(2004) J Exp Medicine 200: 1455

Released	2007-11-06
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	BETA-2 MICROGLOBULIN (protein) HIV P17 (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein)

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2XXM \| pdb_00002xxm	Download File View File

Crystal structure of the HIV-1 capsid protein C-terminal domain in complex with a camelid VHH and the CAI peptide.

Igonet, S., Vaney, M.C., Bartonova, V., Helma, J., Rothbauer, U., Leonhardt, H., Stura, E., Krausslich, H.-G., Rey, F.A.

To be published

Released	2011-10-12
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Human immunodeficiency virus Vicugna pacos synthetic construct
Macromolecule	CAMELID VHH 9 (protein) CAPSID PROTEIN P24 (protein) INHIBITOR OF CAPSID ASSEMBLY (protein)
Unique Ligands	ACT

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2YPK \| pdb_00002ypk	Download File View File

Structural features underlying T-cell receptor sensitivity to concealed MHC class I micropolymorphisms

Stewart-Jones, G.B., Simpson, P., Van Der Merwe, P.A., Easterbrook, P., Mcmichael, A.J., Rowland-Jones, S.L., Jones, E.Y., Gillespie, G.M.

(2012) Proc Natl Acad Sci U S A 109: E3483

Released	2012-11-28
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN (protein) KF11 P24 GAG PEPTIDE (protein)

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2YPL \| pdb_00002ypl	Download File View File

Structural features underlying T-cell receptor sensitivity to concealed MHC class I micropolymorphisms

Stewart-Jones, G.B., Simpson, P., van der Merwe, P.A., Easterbrook, P., McMichael, A.J., Rowland-Jones, S.L., Jones, E.Y., Gillespie, G.M.

(2012) Proc Natl Acad Sci U S A 109: E3483

Released	2012-11-28
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	AGA T-CELL RECEPTOR ALPHA CHAIN (protein) AGA T-CELL RECEPTOR BETA CHAIN (protein) BETA-2-MICROGLOBULIN (protein) HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, B-57 ALPHA CHAIN (protein) KF11 P24 GAG PEPTIDE (protein)

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3GUT \| pdb_00003gut	Download File View File

Crystal structure of a higher-order complex of p50:RelA bound to the HIV-1 LTR

Stroud, J.C., Oltman, A.J., Han, A., Bates, D.L., Chen, L.

(2009) J Mol Biology 393: 98-112

Released	2009-09-08
Method	X-RAY DIFFRACTION 3.59 Å
Organisms	Homo sapiens Human immunodeficiency virus
Macromolecule	Nuclear factor NF-kappa-B p105 subunit (protein) Transcription factor p65 (protein) HIV-LTR Core Forward Strand (nucleic acid) HIV-LTR Core Reverse Strand (nucleic acid)

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3RU8 \| pdb_00003ru8	Download File View File

Structure of an HIV epitope scaffold in complex with neutralizing antibody b12 Fab

Carrico, C.T.D., Strong, R.K.

(2011) Science 334: 373-376

Released	2011-11-02
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Homo sapiens Human immunodeficiency virus Thermobifida fusca synthetic construct
Macromolecule	Antibody b12, Heavy Chain (protein) Antibody b12, Light Chain (protein) Epitope Scaffold 2bodx43 (protein)
Unique Ligands	GOL

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3ZCM \| pdb_00003zcm	Download File View File

Small molecule inhibitors of the LEDGF site of HIV integrase identified by fragment screening and structure based design.

Peat, T.S.

(2012) PLoS One 7: 40147

Released	2012-12-05
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus
Macromolecule	HIV INTEGRASE (protein)
Unique Ligands	ACT, GOL, PX3, SO4

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Scientific Name of Source Organism

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Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1AKJ | pdb_00001akj

1CZQ | pdb_00001czq

1D4H | pdb_00001d4h

1D4I | pdb_00001d4i

1D4J | pdb_00001d4j

1GZL | pdb_00001gzl

1KZK | pdb_00001kzk

1MFS | pdb_00001mfs

1QO3 | pdb_00001qo3

1W5V | pdb_00001w5v

1W5W | pdb_00001w5w

1W5X | pdb_00001w5x

1W5Y | pdb_00001w5y

2BSS | pdb_00002bss

2BVP | pdb_00002bvp

2BVQ | pdb_00002bvq

2I5Y | pdb_00002i5y

2V2W | pdb_00002v2w

2V2X | pdb_00002v2x

2XXM | pdb_00002xxm

2YPK | pdb_00002ypk

2YPL | pdb_00002ypl

3GUT | pdb_00003gut

3RU8 | pdb_00003ru8

3ZCM | pdb_00003zcm