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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Human immunodeficiency virus 2"

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Chlorobium limicola (17)
	Chlorobium limicola DSM 245 (4)

Taxonomy

Bacteria (21)

Experimental Method

X-RAY DIFFRACTION (21)

Polymer Entity Type

Protein (21)

Refinement Resolution (Å)

	1.5 - 2.0 (8)
	2.0 - 2.5 (10)
	2.5 - 3.0 (3)

Release Date

	2005 - 2009 (2)
	2015 - 2019 (8)
	2020 - 2024 (11)

Enzyme Classification Name

Transferases (1)

Symmetry Type

	Asymmetric (15)
	Dihedral (5)
	Cyclic (2)

AllSelected

1 to 21 of 21 Structures

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2NNC \| pdb_00002nnc	Download File View File

Structure of the sulfur carrier protein SoxY from Chlorobium limicola f thiosulfatophilum

Stout, J., Van Driessche, G., Savvides, S.N., Van Beeumen, J.

(2007) Protein Sci 16: 589-601

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Chlorobium limicola
Macromolecule	Sulfur covalently-binding protein (protein)
Unique Ligands	CL, HDZ, PO4

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2NNF \| pdb_00002nnf	Download File View File

Structure of the sulfur carrier protein SoxY from Chlorobium limicola f thiosulfatophilum

Stout, J., Van Driessche, G., Savvides, S.N., Van Beeumen, J.

(2007) Protein Sci 16: 589-601

Released	2007-03-13
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Chlorobium limicola
Macromolecule	Sulfur covalently-binding protein (protein)
Unique Ligands	PO4

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6H98 \| pdb_00006h98	Download File View File

Native crystal structure of anaerobic ergothioneine biosynthesis enzyme from Chlorobium limicola.

Leisinger, F., Burn, R., Meury, M., Lukat, P., Seebeck, F.P.

(2019) J Am Chem Soc 141: 6906-6914

Released	2019-06-12
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Chlorobium limicola DSM 245
Macromolecule	Sulfurtransferase (protein)
Unique Ligands	CL, EOH, FMT, GOL, MG

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6H99 \| pdb_00006h99	Download File View File

Crystal structure of anaerobic ergothioneine biosynthesis enzyme from Chlorobium limicola in persulfide form.

Leisinger, F., Burn, R., Meury, M., Lukat, P., Seebeck, F.P.

(2019) J Am Chem Soc 141: 6906-6914

Released	2019-06-12
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Chlorobium limicola DSM 245
Macromolecule	Sulfurtransferase (protein)
Unique Ligands	CL, EDO, GOL, MG, PEG

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6H9A \| pdb_00006h9a	Download File View File

Crystal structure of anaerobic ergothioneine biosynthesis enzyme from Chlorobium limicola in complex with natural substrate trimethyl histidine.

Leisinger, F., Burn, R., Meury, M., Lukat, P., Seebeck, F.P.

(2019) J Am Chem Soc 141: 6906-6914

Released	2019-06-12
Method	X-RAY DIFFRACTION 2.831 Å
Organisms	Chlorobium limicola DSM 245
Macromolecule	Sulfurtransferase (protein)
Unique Ligands	AVJ, CL, NA, SO4

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6HXJ \| pdb_00006hxj	Download File View File

Structure of ATP citrate lyase from Chlorobium limicola in complex with citrate and coenzyme A.

Verstraete, K., Verschueren, K.

(2019) Nature 568: 571-575

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Chlorobium limicola
Macromolecule	ATP-citrate lyase alpha-subunit (protein) ATP-citrate lyase beta-subunit (protein)
Unique Ligands	COA, FLC, PG4, PGE, TRS

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6HXN \| pdb_00006hxn	Download File View File

Structure of the citryl-CoA lyase core module of Chlorobium limicola ATP citrate lyase (space group P3121)

Verstraete, K., Verschueren, K.

(2019) Nature 568: 571-575

Released	2019-04-10
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Chlorobium limicola
Macromolecule	ATP-citrate lyase alpha-subunit (protein)
Unique Ligands	COA, SO4

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6HXO \| pdb_00006hxo	Download File View File

Structure of the citryl-CoA lyase core module of Chlorobium limicola ATP citrate lyase (space group P21)

Verstraete, K., Verschueren, K.

(2019) Nature 568: 571-575

Released	2019-04-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Chlorobium limicola
Macromolecule	ATP-citrate lyase alpha-subunit (protein)
Unique Ligands	FLC, MES

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6KTV \| pdb_00006ktv	Download File View File

The structure of EanB complex with hercynine and persulfided Cys412

Wu, L., Liu, P.H., Zhou, J.H.

(2020) ACS Catal 10: 8981-8994

Released	2020-08-26
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Chlorobium limicola
Macromolecule	Sulfurtransferase (protein)
Unique Ligands	AVJ, CL, EDO, GOL, IMD, MG, NI, PDO, PEG, PG4

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6KTW \| pdb_00006ktw	Download File View File

structure of EanB with hercynine

Wu, L., Liu, P.H., Zhou, J.H.

(2020) ACS Catal 10: 8981-8994

Released	2020-08-26
Method	X-RAY DIFFRACTION 1.931 Å
Organisms	Chlorobium limicola
Macromolecule	Sulfurtransferase (protein)
Unique Ligands	AVJ, CL, EDO, GOL, IMD, MG, NA, PGE

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6KTX \| pdb_00006ktx	Download File View File

The wildtype structure of EanB

Wu, L., Liu, P.H., Zhou, J.H.

(2020) ACS Catal 10: 8981-8994

Released	2020-08-26
Method	X-RAY DIFFRACTION 2.189 Å
Organisms	Chlorobium limicola
Macromolecule	Sulfurtransferase (protein)
Unique Ligands	CL, EDO, MG, MPO, PEG, PGE

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6KTZ \| pdb_00006ktz	Download File View File

The complex structure of EanB/C412S with hercynine

Wu, L., Liu, P.H., Zhou, J.H.

(2020) ACS Catal 10: 8981-8994

Released	2020-08-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Chlorobium limicola
Macromolecule	Sulfurtransferase (protein)
Unique Ligands	AVJ, BR, CL, EDO, MG, PEG

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6KU1 \| pdb_00006ku1	Download File View File

The structure of EanB/Y353A complex with ergothioneine

Wu, L., Liu, P.H., Zhou, J.H.

(2020) ACS Catal 10: 8981-8994

Released	2020-08-26
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Chlorobium limicola
Macromolecule	Sulfurtransferase (protein)
Unique Ligands	CL, EDO, LW8, MG

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6KU2 \| pdb_00006ku2	Download File View File

The structure of EanB/Y353A complex with ergothioneine covalent linked with persulfide Cys412

Wu, L., Liu, P.H., Zhou, J.H.

(2020) ACS Catal 10: 8981-8994

Released	2020-08-26
Method	X-RAY DIFFRACTION 2.34 Å
Organisms	Chlorobium limicola
Macromolecule	Sulfurtransferase (protein)
Unique Ligands	BR, CL, DV6, EDO, GOL, IMD, MG, PEG, ZN

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6KVW \| pdb_00006kvw	Download File View File

The complex structure of EanB/C339A/C370A and hercynine

Wu, L., Liu, P.H., Zhou, J.H.

To be published

Released	2020-09-09
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Chlorobium limicola
Macromolecule	Sulfurtransferase (protein)
Unique Ligands	AVJ, CA, CL, EDO, MG, ZN

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6KVY \| pdb_00006kvy	Download File View File

The structure of EanB/T414A complex with hercynine

Wu, L., Liu, P.H., Zhou, J.H.

To be published

Released	2020-09-09
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Chlorobium limicola
Macromolecule	Sulfurtransferase (protein)
Unique Ligands	AVJ, CL, MG

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6KVZ \| pdb_00006kvz	Download File View File

The structure of EanB/T414V complex with hercynine

Wu, L., Liu, P.H., Zhou, J.H.

To be published

Released	2020-09-09
Method	X-RAY DIFFRACTION 2.18 Å
Organisms	Chlorobium limicola
Macromolecule	Sulfurtransferase (protein)
Unique Ligands	AVJ, CL, MG, PEG

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6KW0 \| pdb_00006kw0	Download File View File

The structure of EanB/Y353F-Cys412-persulfide in tetrahedral intermediate state with ergothioneine

Wu, L., Liu, P.H., Zhou, J.H.

To be published

Released	2020-09-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Chlorobium limicola
Macromolecule	Sulfurtransferase (protein)
Unique Ligands	BR, CL, LW8, MG, PGE

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6NZY \| pdb_00006nzy	Download File View File

Structural Determination of the Carboxy-terminal portion of ATP-citrate lyase

Nguyen, V.H., Fraser, M.E.

(2019) Protein Sci 28: 1840-1849

Released	2019-12-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Chlorobium limicola
Macromolecule	ATP-citrate lyase alpha-subunit (protein)
Unique Ligands	ACO, GOL, NA, PO4

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6QCL \| pdb_00006qcl	Download File View File

Citryl-CoA lyase core module of Chlorobium limicola ATP citrate lyase in complex with acetyl-CoA and L-malate

Verstraete, K., Verschueren, K.

(2019) Nature 568: 571-575

Released	2019-04-10
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Chlorobium limicola
Macromolecule	ATP-citrate lyase alpha-subunit (protein)
Unique Ligands	ACO, CA, LMR, PG4, PGE

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8GXV \| pdb_00008gxv	Download File View File

Structure of a bacterial serpin Choloropin derived from Cholorobium limicola

Zhou, A., Xu, J.

To be published

Released	2023-09-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Chlorobium limicola DSM 245
Macromolecule	Proteinase inhibitor I4 serpin (protein)
Unique Ligands	GOL, ZN

1 to 21 of 21 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

2NNC | pdb_00002nnc

2NNF | pdb_00002nnf

6H98 | pdb_00006h98

6H99 | pdb_00006h99

6H9A | pdb_00006h9a

6HXJ | pdb_00006hxj

6HXN | pdb_00006hxn

6HXO | pdb_00006hxo

6KTV | pdb_00006ktv

6KTW | pdb_00006ktw

6KTX | pdb_00006ktx

6KTZ | pdb_00006ktz

6KU1 | pdb_00006ku1

6KU2 | pdb_00006ku2

6KVW | pdb_00006kvw

6KVY | pdb_00006kvy

6KVZ | pdb_00006kvz

6KW0 | pdb_00006kw0

6NZY | pdb_00006nzy

6QCL | pdb_00006qcl

8GXV | pdb_00008gxv