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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Lama glama"

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Search Summary

This query matches 938 Structures.

Refinements

Structure Determination Methodology

experimental (938)

Scientific Name of Source Organism

	Lama glama (938)
	Homo sapiens (478)
	Severe acute respiratory syndrome coronavirus 2 (75)
	Escherichia coli (59)
	Mus musculus (52)
	synthetic construct (45)
	Bos taurus (34)
	Rattus norvegicus (34)
	Escherichia coli K-12 (28)
	Aequorea victoria (18)

More...

Taxonomy

	Eukaryota (938)
	Bacteria (175)
	Riboviria (130)
	other sequences (45)
	Duplodnaviria (26)
	Varidnaviria (8)
	Archaea (6)
	Monodnaviria (5)
	unclassified bacterial viruses (1)

Experimental Method

	X-RAY DIFFRACTION (553)
	ELECTRON MICROSCOPY (381)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (938)
	RNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (25)
	1.5 - 2.0 (155)
	2.0 - 2.5 (157)
	2.5 - 3.0 (254)
	3.0 - 3.5 (225)
	3.5 - 4.0 (91)
	4.0 - 4.5 (22)
	> 4.5 (5)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (6)
	2005 - 2009 (6)
	2010 - 2014 (94)
	2015 - 2019 (195)
	2020 - 2024 (591)
	2025 - 2029 (45)

Enzyme Classification Name

	Hydrolases (249)
	Transferases (41)
	Isomerases (21)
	Translocases (10)
	Oxidoreductases (9)
	Ligases (1)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (352)
	mpstruc (251)
	MemProtMD (225)
	OPM (185)

Symmetry Type

	Asymmetric (787)
	Cyclic (153)
	Dihedral (4)
	Icosahedral (4)
	Helical (1)

SCOP Classification

	All beta proteins (273)
	Artifacts (181)
	Alpha and beta proteins (a/b) (27)
	Alpha and beta proteins (a+b) (20)
	All alpha proteins (13)
	Small proteins (3)
	Membrane and cell surface proteins and peptides (6)
	Multi-domain proteins (alpha and beta) (3)
	Coiled coil proteins (2)

AllSelected

1 to 25 of 938 Structures

Page 1 of 38

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1G9E \| pdb_00001g9e	Download File View File

SOLUTION STRUCTURE AND RELAXATION MEASUREMENTS OF AN ANTIGEN-FREE HEAVY CHAIN VARIABLE DOMAIN (VHH) FROM LLAMA

Renisio, J.-G., Perez, J., Czisch, M., Guenneugues, M., Bornet, O., Frenken, L., Cambillau, C., Darbon, H.

(2002) Proteins 47: 546-555

Released	2002-10-23
Method	SOLUTION NMR
Organisms	Lama glama
Macromolecule	H14 (protein)

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1HCV \| pdb_00001hcv	Download File View File

LLAMA HEAVY CHAIN VARIABLE DOMAIN AGAINST ALPHA SUBUNIT OF HCG (HUMAN CHORIONIC GONADOTROPIN)

Spinelli, S., Cambillau, C., Tegoni, M.

(1996) Nat Struct Biol 3: 752-757

Released	1997-07-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Lama glama
Macromolecule	IMMUNOGLOBULIN G (protein)

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1I3U \| pdb_00001i3u	Download File View File

THREE-DIMENSIONAL STRUCTURE OF A LLAMA VHH DOMAIN COMPLEXED WITH THE DYE RR1

Spinelli, S., Tegoni, M., Frenken, L., van Vliet, C., Cambillau, C.

(2001) J Mol Biology 311: 123-129

Released	2001-08-08
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Lama glama
Macromolecule	ANTIBODY VHH LAMA DOMAIN (protein)
Unique Ligands	RR1, SO4

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1I3V \| pdb_00001i3v	Download File View File

THREE-DIMENSIONAL STRUCTURE OF A LAMA VHH DOMAIN UNLIGANDED

Spinelli, S., Tegoni, M., Frenken, L., van Vliet, C., Cambillau, C.

(2001) J Mol Biology 311: 123-129

Released	2001-08-08
Method	X-RAY DIFFRACTION 2.03 Å
Organisms	Lama glama
Macromolecule	ANTIBODY VHH LAMA DOMAIN (protein)

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1IEH \| pdb_00001ieh	Download File View File

SOLUTION STRUCTURE OF A SOLUBLE SINGLE-DOMAIN ANTIBODY WITH HYDROPHOBIC RESIDUES TYPICAL OF A VL/VH INTERFACE

Vranken, W., Tolkatchev, D., Xu, P., Tanha, J., Chen, Z., Narang, S., Ni, F.

(2002) Biochemistry 41: 8570-8579

Released	2002-08-07
Method	SOLUTION NMR
Organisms	Lama glama
Macromolecule	BRUC.D4.4 (protein)

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1QD0 \| pdb_00001qd0	Download File View File

CAMELID HEAVY CHAIN VARIABLE DOMAINS PROVIDE EFFICIENT COMBINING SITES TO HAPTENS

Spinelli, S., Frenken, L.G.J., Hermans, P., Verrips, T., Brown, K., Tegoni, M., Cambillau, C.

(2000) Biochemistry 39: 1217-1222

Released	2000-07-19
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Lama glama
Macromolecule	VHH-R2 ANTI-RR6 ANTIBODY (protein)
Unique Ligands	CU, RR6

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1SHM \| pdb_00001shm	Download File View File

Convergent solutions to VHH domain stabilization from natural and in vitro evolution

Bond, C.J., Wiesmann, C., Marsters, J.C., Sidhu, S.S.

(2005) J Mol Biology 348: 699-709

Released	2005-03-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Lama glama
Macromolecule	ANTIBODY RIG (protein)

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1SJV \| pdb_00001sjv	Download File View File

Three-Dimensional Structure of a Llama VHH Domain Swapping

Spinelli, S., Desmyter, A., Frenken, L., Verrips, T., Cambillau, C.

(2004) FEBS Lett 564: 35-40

Released	2004-06-01
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Lama glama
Macromolecule	r9 (protein)

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1SJX \| pdb_00001sjx	Download File View File

Three-Dimensional Structure of a Llama VHH Domain OE7 binding the cell wall protein Malf1

Dolk, E., van der Vaart, M., Hulsik, D.L., Vriend, G., de Haard, H., Spinelli, S., Cambillau, C., Frenken, L., Verrips, T.

(2005) Appl Environ Microbiol 71: 442-450

Released	2005-03-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Lama glama
Macromolecule	immunoglobulin VH domain (protein)
Unique Ligands	MPD

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1U0Q \| pdb_00001u0q	Download File View File

Structure of a Llama VHH domain raised against a carbazole molecule

Cambillau, C., Spinelli, S., Desmyter, A., Verrips, T.

To be published

Released	2005-06-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Lama glama
Macromolecule	immunoglobulin heavy chain variable domain (protein)

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2BSE \| pdb_00002bse	Download File View File

Structure of Lactococcal Bacteriophage p2 Receptor Binding Protein in complex with a llama VHH domain

Spinelli, S., Desmyter, A., Verrips, C.T., de Haard, H.J.W., Moineau, S., Cambillau, C.

(2006) Nat Struct Mol Biol 13: 85

Released	2005-11-02
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Lactococcus virus P2 Lama glama
Macromolecule	LLAMA IMMUNOGLOBULIN (protein) RECEPTOR BINDING PROTEIN (protein)

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2WZP \| pdb_00002wzp	Download File View File

Structures of Lactococcal Phage p2 Baseplate Shed Light on a Novel Mechanism of Host Attachment and Activation in Siphoviridae

Sciara, G., Bebeacua, C., Bron, P., Tremblay, D., Ortiz-Lombardia, M., Lichiere, J., van Heel, M., Campanacci, V., Moineau, S., Cambillau, C.

(2010) Proc Natl Acad Sci U S A 107: 6852

Released	2010-02-16
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Lactococcus virus P2 Lama glama
Macromolecule	CAMELID VHH5 (protein) LACTOCOCCAL PHAGE P2 ORF15 (protein) LACTOCOCCAL PHAGE P2 ORF16 (protein) PUTATIVE RECEPTOR BINDING PROTEIN (protein)

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2X1O \| pdb_00002x1o	Download File View File

Gelsolin Nanobody

Van Den Abbeele, A., Declercq, S., De Ganck, A., De Corte, V., Van Loo, B., Srinivasan, V., Steyaert, J., Van De Kerckhove, J., Gettemans, J.

(2010) Cell Mol Life Sci 67: 1519

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Lama glama
Macromolecule	GELSOLIN NANOBODY (protein)

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2X1P \| pdb_00002x1p	Download File View File

Gelsolin Nanobody

Van Den Abbeele, A., Declercq, S., De Ganck, A., De Corte, V., Van Loo, B., Srinivasan, V., Steyaert, J., Van De Kerckhove, J., Gettemans, J.

(2010) Cell Mol Life Sci 67: 1519

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Lama glama
Macromolecule	GELSOLIN NANOBODY (protein)

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2X1Q \| pdb_00002x1q	Download File View File

Gelsolin Nanobody

Van Den Abbeele, A., Declercq, S., De Ganck, A., De Corte, V., Van Loo, B., Srinivasan, V., Steyaert, J., Van De Kerckhove, J., Gettemans, J.

(2010) Cell Mol Life Sci 67: 1519

Released	2011-01-12
Method	X-RAY DIFFRACTION 1.06 Å
Organisms	Lama glama
Macromolecule	GELSOLIN NANOBODY (protein)

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2XA3 \| pdb_00002xa3	Download File View File

crystal structure of the broadly neutralizing llama VHH D7 and its mode of HIV-1 gp120 interaction

Hinz, A., Lutje Hulsik, D., Forsman, A., Koh, W., Belrhali, H., Gorlani, A., de Haard, H., Weiss, R.A., Verrips, T., Weissenhorn, W.

(2010) PLoS One 5: e10482-e10482

Released	2010-05-26
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Lama glama
Macromolecule	LLAMA HEAVY CHAIN ANTIBODY D7 (protein)
Unique Ligands	SO4

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3CFI \| pdb_00003cfi	Download File View File

Nanobody-aided structure determination of the EPSI:EPSJ pseudopilin heterdimer from Vibrio Vulnificus

Lam, A.Y., Pardon, E., Korotkov, K.V., Steyaert, J., Hol, W.G.J.

(2009) J Struct Biol 166: 8-15

Released	2009-01-13
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Lama glama Vibrio vulnificus
Macromolecule	Nanobody NBEPSIJ_11 (protein) Type II secretory pathway, PSEUDOPILIN EpsJ (protein) Type II secretory pathway, pseudopilin EpsI (protein)
Unique Ligands	CL

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3EZJ \| pdb_00003ezj	Download File View File

Crystal structure of the N-terminal domain of the secretin GspD from ETEC determined with the assistance of a nanobody

Korotkov, K.V., Pardon, E., Steyaert, J., Hol, W.G.

(2009) Structure 17: 255-265

Released	2009-02-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli ETEC H10407 Lama glama
Macromolecule	General secretion pathway protein GspD (protein) NANOBODY NBGSPD_7 (protein)
Unique Ligands	CL, PO4

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3K3Q \| pdb_00003k3q	Download File View File

Crystal Structure of a Llama Antibody complexed with the C. Botulinum Neurotoxin Serotype A Catalytic Domain

Thompson, A.A., Dong, J., Marks, J.D., Stevens, R.C.

(2010) J Mol Biology 397: 1106-1118

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Clostridium botulinum A str. Hall Lama glama
Macromolecule	Botulinum neurotoxin type A (protein) llama Aa1 VHH domain (protein)
Unique Ligands	ZN

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3K74 \| pdb_00003k74	Download File View File

Disruption of protein dynamics by an allosteric effector antibody

Oyen, D., Srinivasan, V., Steyaert, J., Barlow, J.

(2011) J Mol Biology 407: 138-148

Released	2010-10-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli K-12 Lama glama
Macromolecule	Dihydrofolate reductase (protein) Nanobody (protein)

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3K7U \| pdb_00003k7u	Download File View File

Structure of essential protein from Trypanosoma brucei

Wu, M.

(2011) J Struct Biol 174: 124-136

Released	2010-11-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Lama glama Trypanosoma brucei
Macromolecule	Antibody (protein) MP18 RNA editing complex protein (protein)

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3K80 \| pdb_00003k80	Download File View File

Structure of essential protein from Trypanosoma brucei

Wu, M.

(2011) J Struct Biol 174: 124-136

Released	2010-11-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Lama glama Trypanosoma brucei
Macromolecule	Antibody (protein) MP18 RNA editing complex protein (protein)

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3K81 \| pdb_00003k81	Download File View File

Structure of the central interaction protein from the Trypanosoma brucei editosome in complex with single domain antibodies

Park, Y.-J., Hol, W.

(2011) J Struct Biol 174: 124-136

Released	2010-11-17
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Lama glama Trypanosoma brucei
Macromolecule	MP18 RNA editing complex protein (protein) Single strand antibody VHH domain (protein)

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3P0G \| pdb_00003p0g	Download File View File

Structure of a nanobody-stabilized active state of the beta2 adrenoceptor

Rasmussen, S.G.F., Choi, H.-J., Fung, J.J., Pardon, E., Casarosa, P., Chae, P.S., DeVree, B.T., Rosenbaum, D.M., Thian, F.S., Kobilka, T.S., Schnapp, A., Konetzki, I., Sunahara, R.K., Gellman, S.H., Pautsch, A., Steyaert, J., Weis, W.I., Kobilka, B.K.

(2011) Nature 469: 175-180

Released	2011-01-19
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Homo sapiens Lama glama Tequatrovirus T4
Macromolecule	Beta-2 adrenergic receptor, Lysozyme (protein) Camelid Antibody Fragment (protein)
Unique Ligands	P0G