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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Mycolicibacterium smegmatis MC2 155"

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Search Summary

This query matches 602 Structures.

Refinements

Structure Determination Methodology

experimental (602)

Scientific Name of Source Organism

	Mycolicibacterium smegmatis MC2 155 (601)
	synthetic construct (13)
	Mycolicibacterium smegmatis (10)
	Escherichia coli (6)
	Mycobacterium tuberculosis H37Rv (6)
	Tequatrovirus T4 (5)
	Enterobacteria phage RB59 (2)
	Aquifex aeolicus (1)
	Bacillus subtilis subsp. subtilis str. 168 (1)
	Mycolicibacterium smegmatis (strain ATCC 700084 / mc(2)155) (1)

More...

Taxonomy

	Bacteria (602)
	other sequences (13)
	Duplodnaviria (7)
	Eukaryota (1)

Experimental Method

	X-RAY DIFFRACTION (428)
	ELECTRON MICROSCOPY (170)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (602)
	RNA (40)
	DNA (34)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (29)
	1.5 - 2.0 (158)
	2.0 - 2.5 (146)
	2.5 - 3.0 (117)
	3.0 - 3.5 (89)
	3.5 - 4.0 (38)
	4.0 - 4.5 (11)
	> 4.5 (8)

Release Date

	2005 - 2009 (37)
	2010 - 2014 (109)
	2015 - 2019 (193)
	2020 - 2024 (243)
	2025 - 2029 (20)

Enzyme Classification Name

	Transferases (109)
	Hydrolases (117)
	Translocases (35)
	Oxidoreductases (82)
	Lyases (38)
	Ligases (19)
	Isomerases (14)

Membrane Protein Annotation

	PDBTM (78)
	OPM (66)
	mpstruc (63)
	MemProtMD (54)

Symmetry Type

	Asymmetric (374)
	Cyclic (169)
	Dihedral (55)
	Tetrahedral (16)
	Icosahedral (2)
	Octahedral (2)
	Helical (1)

SCOP Classification

	Alpha and beta proteins (a/b) (69)
	All alpha proteins (33)
	Alpha and beta proteins (a+b) (42)
	Artifacts (26)
	All beta proteins (12)
	Multi-domain proteins (alpha and beta) (8)

AllSelected

1 to 25 of 602 Structures

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2GEJ \| pdb_00002gej	Download File View File

Crystal Structure of phosphatidylinositol mannosyltransferase (PimA) from Mycobacterium smegmatis in complex with GDP-Man

Guerin, M.E., Buschiazzo, A., Kordulakova, J., Jackson, M., Alzari, P.M.

(2007) J Biological Chem 282: 20705-20714

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	PHOSPHATIDYLINOSITOL MANNOSYLTRANSFERASE (PimA) (protein)
Unique Ligands	GDD

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2GEK \| pdb_00002gek	Download File View File

Crystal Structure of phosphatidylinositol mannosyltransferase (PimA) from Mycobacterium smegmatis in complex with GDP

Guerin, M.E., Buschiazzo, A., Kordulakova, J., Jackson, M., Alzari, P.M.

(2007) J Biological Chem 282: 20705-20714

Released	2007-04-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	PHOSPHATIDYLINOSITOL MANNOSYLTRANSFERASE (PimA) (protein)
Unique Ligands	GDP

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2GRV \| pdb_00002grv	Download File View File

Crystal Structure of LpqW

Marland, Z., Rossjohn, J.

(2006) J Mol Biology 359: 983-997

Released	2006-07-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	LpqW (protein)

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2JFR \| pdb_00002jfr	Download File View File

Crystal structure of the PPM Ser-Thr phosphatase MsPP from Mycobacterium smegmatis in complex with phosphate at 0.83 A resolution

Bellinzoni, M., Wehenkel, A., Shepard, W., Alzari, P.M.

(2007) Structure 15: 863

Released	2007-07-24
Method	X-RAY DIFFRACTION 0.83 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	SER-THR PHOSPHATASE MSPP (protein)
Unique Ligands	CL, MG, MN, PO4

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2JFS \| pdb_00002jfs	Download File View File

Crystal structure of the PPM Ser-Thr phosphatase MsPP from Mycobacterium smegmatis in complex with cacodylate

Bellinzoni, M., Wehenkel, A., Shepard, W., Alzari, P.M.

(2007) Structure 15: 863

Released	2007-07-24
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	SER-THR PHOSPHATASE MSPP (protein)
Unique Ligands	CAC, GOL, MN

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2JFT \| pdb_00002jft	Download File View File

Crystal structure of the PPM Ser-Thr phosphatase MsPP from Mycobacterium smegmatis in complex with sulfate

Bellinzoni, M., Wehenkel, A., Shepard, W., Alzari, P.M.

(2007) Structure 15: 863

Released	2007-07-24
Method	X-RAY DIFFRACTION 1.08 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	SER-THR PHOSPHATASE MSPP (protein)
Unique Ligands	MG, MN, SO4

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2LGJ \| pdb_00002lgj	Download File View File

Solution structure of MsPTH

Yadav, R., Pathak, P., Pulavarti, S., Jain, A., Kumar, A., Shukla, V., Arora, A.

To be published

Released	2012-08-01
Method	SOLUTION NMR
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Peptidyl-tRNA hydrolase (protein)

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2LKY \| pdb_00002lky	Download File View File

Solution structure of MSMEG_1053, the second DUF3349 annotated protein in the genome of Mycobacterium smegmatis, Seattle Structural Genomics Center for Infectious Disease target MysmA.17112.b

Buchko, G.W., Seattle Structural Genomics Center for Infectious Disease (SSGCID)

(2020) Protein Sci 29: 670-685

Released	2011-11-16
Method	SOLUTION NMR
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Uncharacterized protein (protein)

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2NAF \| pdb_00002naf	Download File View File

Solution structure of peptidyl-tRNA hydrolase from Mycobacterium smegmatis

Yadav, R., Pathak, P., Fatma, F., Kabra, A., Pulavarti, S., Jain, A., Kumar, A., Shukla, V., Arora, A.

(2016) Biochim Biophys Acta 1864: 1304-1314

Released	2017-01-11
Method	SOLUTION NMR
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Peptidyl-tRNA hydrolase (protein)

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2V2K \| pdb_00002v2k	Download File View File

THE CRYSTAL STRUCTURE OF FDXA, A 7FE FERREDOXIN FROM MYCOBACTERIUM SMEGMATIS

Ricagno, S., de Rosa, M., Aliverti, A., Zanetti, G., Bolognesi, M.

(2007) Biochem Biophys Res Commun 360: 97

Released	2007-07-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	FERREDOXIN (protein)
Unique Ligands	ACT, F3S

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2V9U \| pdb_00002v9u	Download File View File

Rim domain of main porin from Mycobacteria smegmatis

Grueninger, D., Ziegler, M.O.P., Koetter, J.W.A., Treiber, N., Schulze, M.-S., Schulz, G.E.

(2008) Science 319: 206

Released	2008-01-15
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	MSPA (protein)

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2WE7 \| pdb_00002we7	Download File View File

Crystal structure of Mycobacterium tuberculosis Rv0376c homologue from Mycobacterium smegmatis

Cho, H.J., Kang, B.S.

To be published

Released	2010-04-07
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Xanthine dehydrogenase (protein)

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2WE8 \| pdb_00002we8	Download File View File

Crystal structure of Mycobacterium tuberculosis Rv0376c homologue from Mycobacterium smegmatis

Cho, H.J., Kang, B.S.

To be published

Released	2010-04-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	XANTHINE DEHYDROGENASE (protein)
Unique Ligands	ACT, GOL

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2WZM \| pdb_00002wzm	Download File View File

Crystal structure of a mycobacterium aldo-keto reductase in its apo and liganded form

Scoble, J., McAlister, A.D., Fulton, Z., Troy, S., Byres, E., Vivian, J.P., Brammananth, R., Wilce, M.C.J., Le Nours, J., Zaker-Tabrizi, L., Coppel, R.L., Crellin, P.K., Rossjohn, J., Beddoe, T.

(2010) J Mol Biology 398: 26

Released	2010-02-16
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	ALDO-KETO REDUCTASE (protein)
Unique Ligands	NA7

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2WZT \| pdb_00002wzt	Download File View File

Crystal structure of a mycobacterium aldo-keto reductase in its apo and liganded form

Scoble, J., McAlister, A.D., Fulton, Z., Troy, S., Byres, E., Vivian, J.P., Brammananth, R., Wilce, M.C.J., Le Nours, J., Zaker-Tabrizi, L., Coppel, R.L., Crellin, P.K., Rossjohn, J., Beddoe, T.

(2010) J Mol Biology 398: 26

Released	2010-02-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	ALDO-KETO REDUCTASE (protein)

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2WZV \| pdb_00002wzv	Download File View File

Crystal structure of the FMN-dependent nitroreductase NfnB from Mycobacterium smegmatis

Bellinzoni, M., Manina, G., Riccardi, G., Alzari, P.M.

(2010) Mol Microbiol 77: 1172

Released	2010-07-14
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	NFNB PROTEIN (protein)
Unique Ligands	FMN, GOL, PO4

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2WZW \| pdb_00002wzw	Download File View File

Crystal structure of the FMN-dependent nitroreductase NfnB from Mycobacterium smegmatis in complex with NADPH

Bellinzoni, M., Manina, G., Riccardi, G., Alzari, P.M.

(2010) Mol Microbiol 77: 1172

Released	2010-07-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	NFNB PROTEIN (protein)
Unique Ligands	FMN, NDP, PO4

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2X1L \| pdb_00002x1l	Download File View File

Crystal structure of Mycobacterium smegmatis methionyl-tRNA synthetase in complex with methionine and adenosine

Ingvarsson, H., Jones, T.A., Unge, T.

(2010) FEBS J 277: 3947

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	METHIONYL-TRNA SYNTHETASE (protein)
Unique Ligands	2HP, ADN, CXS, MET

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2X1M \| pdb_00002x1m	Download File View File

Crystal structure of Mycobacterium smegmatis methionyl-tRNA synthetase in complex with methionine

Ingvarsson, H., Jones, T.A., Unge, T.

(2010) FEBS J 277: 3947

Released	2010-07-28
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	METHIONYL-TRNA SYNTHETASE (protein)
Unique Ligands	2HP, CXS, MET

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2XT6 \| pdb_00002xt6	Download File View File

Crystal structure of Mycobacterium smegmatis alpha-ketoglutarate decarboxylase homodimer (orthorhombic form)

Wagner, T., Bellinzoni, M., Wehenkel, A.M., O'Hare, H.M., Alzari, P.M.

(2011) Chem Biol 18: 1011

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.74 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	2-OXOGLUTARATE DECARBOXYLASE (protein)
Unique Ligands	CA, MG, TPP

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2XTA \| pdb_00002xta	Download File View File

Crystal structure of the SucA domain of Mycobacterium smegmatis alpha- ketoglutarate decarboxylase in complex with acetyl-CoA (triclinic form)

Wagner, T., Bellinzoni, M., Wehenkel, A.M., O'Hare, H.M., Alzari, P.M.

(2011) Chem Biol 18: 1011

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	2-OXOGLUTARATE DECARBOXYLASE (protein)
Unique Ligands	ACO, CA, MG, TPP

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2XWM \| pdb_00002xwm	Download File View File

Crystal structure of IspD from Mycobacterium smegmatis in complex with CMP

Bjorkelid, C., Bergfors, T., Unge, T., Jones, T.A.

(2011) Acta Crystallogr D Biol Crystallogr 67: 403

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE CYTIDYLYLTRANSFERASE (protein)
Unique Ligands	C5P

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2Y0P \| pdb_00002y0p	Download File View File

Crystal structure of the SucA domain of Mycobacterium smegmatis alpha- ketoglutarate decarboxylase in complex with the enamine-ThDP intermediate and acetyl-CoA

Wagner, T., Bellinzoni, M., Wehenkel, A.M., O'Hare, H.M., Alzari, P.M.

(2011) Chem Biol 18: 1011

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	2-OXOGLUTARATE DECARBOXYLASE (protein)
Unique Ligands	ACO, MG, TD7

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2YOO \| pdb_00002yoo	Download File View File

Cholest-4-en-3-one bound structure of CYP142 from Mycobacterium smegmatis

Garcia-Fernandez, E., Frank, D.J., Galan, B., Kells, P.M., Podust, L.M., Garcia, J.L., Ortiz de Montellano, P.R.

(2013) Environ Microbiol 15: 2342

Released	2013-02-27
Method	X-RAY DIFFRACTION 1.69 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	P450 HEME-THIOLATE PROTEIN (protein)
Unique Ligands	HEM, K2B, MG

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2Z90 \| pdb_00002z90	Download File View File

Crystal Structure of the Second Dps from Mycobacterium smegmatis

Roy, S., Saraswathi, R., Chatterji, D., Vijayan, M.

(2008) J Mol Biology 375: 948-959

Released	2008-04-22
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	Starvation-inducible DNA-binding protein or fine tangled pili major subunit (protein)
Unique Ligands	CL, FE2, MG

1 to 25 of 602 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

2GEJ | pdb_00002gej

2GEK | pdb_00002gek

2GRV | pdb_00002grv

2JFR | pdb_00002jfr

2JFS | pdb_00002jfs

2JFT | pdb_00002jft

2LGJ | pdb_00002lgj

2LKY | pdb_00002lky

2NAF | pdb_00002naf

2V2K | pdb_00002v2k

2V9U | pdb_00002v9u

2WE7 | pdb_00002we7

2WE8 | pdb_00002we8

2WZM | pdb_00002wzm

2WZT | pdb_00002wzt

2WZV | pdb_00002wzv

2WZW | pdb_00002wzw

2X1L | pdb_00002x1l

2X1M | pdb_00002x1m

2XT6 | pdb_00002xt6

2XTA | pdb_00002xta

2XWM | pdb_00002xwm

2Y0P | pdb_00002y0p

2YOO | pdb_00002yoo

2Z90 | pdb_00002z90