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234,785 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Tannerella forsythia"

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Search Summary

This query matches 39 Structures.

Refinements

Structure Determination Methodology

experimental (39)

Scientific Name of Source Organism

	Tannerella forsythia (33)
	Tannerella forsythia 92A2 (7)
	synthetic construct (3)
	Homo sapiens (1)

Taxonomy

	Bacteria (39)
	other sequences (3)
	Eukaryota (1)

Experimental Method

X-RAY DIFFRACTION (39)

Polymer Entity Type

Protein (39)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (16)
	2.0 - 2.5 (15)
	2.5 - 3.0 (2)
	3.0 - 3.5 (2)

Release Date

	2010 - 2014 (3)
	2015 - 2019 (9)
	2020 - 2024 (25)
	2025 - 2029 (2)

Enzyme Classification Name

Hydrolases (16)

Symmetry Type

	Asymmetric (25)
	Cyclic (12)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (1)
	Artifacts (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 39 Structures

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2XS3 \| pdb_00002xs3	Download File View File

Structure of karilysin catalytic MMP domain

Cerda-Costa, N., Guevara, T., Karim, A.Y., Ksiazek, M., Nguyen, K.-A., Arolas, J.L., Potempa, J., Gomis-Ruth, F.X.

(2011) Mol Microbiol 79: 119

Released	2010-11-03
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Tannerella forsythia synthetic construct
Macromolecule	KARILYSIN PROTEASE (protein) PEPTIDE ALA-PHE-THR-SER (protein)
Unique Ligands	TRS, ZN

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2XS4 \| pdb_00002xs4	Download File View File

Structure of karilysin catalytic MMP domain in complex with magnesium

Cerda-Costa, N., Guevara, T., Karim, A.Y., Ksiazek, M., Nguyen, K.-A., Arolas, J.L., Potempa, J., Gomis-Ruth, F.X.

(2011) Mol Microbiol 79: 119

Released	2010-11-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Tannerella forsythia synthetic construct
Macromolecule	KARILYSIN PROTEASE (protein) PEPTIDE ALA-PHE-THR (protein)
Unique Ligands	CL, MG, ZN

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4IN9 \| pdb_00004in9	Download File View File

Structure of karilysin MMP-like catalytic domain in complex with inhibitory tetrapeptide SWFP

Guevara, T., Ksiazek, M., Skottrup, P.D., Cerda-Costa, N., Trillo-Muyo, S., de Diego, I., Riise, E., Potempa, J., Gomis-Ruth, F.X.

(2013) Acta Crystallogr Sect F Struct Biol Cryst Commun 69: 472-476

Released	2013-05-15
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Tannerella forsythia synthetic construct
Macromolecule	Karilysin protease (protein) Peptide SER-TRP-PHE-PRO (protein)
Unique Ligands	GOL, K, NA, ZN

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4R3V \| pdb_00004r3v	Download File View File

Structure of karilysin propeptide and catalytic MMP domain

Lopez-Pelegrin, M., Ksiazek, M., Karim, A.Y., Guevara, T., Arolas, J.L., Potempa, J., Gomis-Ruth, F.X.

(2015) J Biological Chem 290: 4728-4740

Released	2015-01-07
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Tannerella forsythia 92A2
Macromolecule	Karilysin (protein)
Unique Ligands	CA, GOL, ZN

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5NCS \| pdb_00005ncs	Download File View File

Structure of the native serpin-type proteinase inhibitor, miropin.

Goulas, T., Ksiazek, M., Garcia-Ferrer, I., Mizgalska, D., Potempa, J., Gomis-Ruth, X.

(2017) J Biological Chem 292: 10883-10898

Released	2017-05-24
Method	X-RAY DIFFRACTION 3 Å
Organisms	Tannerella forsythia 92A2
Macromolecule	Serpin (protein)

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5NCT \| pdb_00005nct	Download File View File

Structure of the trypsin induced serpin-type proteinase inhibitor, miropin.

Goulas, T., Ksiazek, M., Garcia-Ferrer, I., Mizgalska, D., Potempa, J., Gomis-Ruth, X.

(2017) J Biological Chem 292: 10883-10898

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Tannerella forsythia
Macromolecule	Serpin-type proteinase inhibitor, miropin (protein)
Unique Ligands	ASP, GOL, SER

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5NCU \| pdb_00005ncu	Download File View File

Structure of the subtilisin induced serpin-type proteinase inhibitor, miropin.

Goulas, T., Ksiazek, M., Garcia-Ferrer, I., Mizgalska, D., Potempa, J., Gomis-Ruth, X.

(2017) J Biological Chem 292: 10883-10898

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Tannerella forsythia
Macromolecule	Serpin (protein)
Unique Ligands	CL, GOL, IOD, K

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5NCW \| pdb_00005ncw	Download File View File

Structure of the trypsin induced serpin-type proteinase inhibitor, miropin (V367K/K368A mutant).

Goulas, T., Ksiazek, M., Garcia-Ferrer, I., Mizgalska, D., Potempa, J., Gomis-Ruth, X.

(2017) J Biological Chem 292: 10883-10898

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Tannerella forsythia
Macromolecule	Serpin-type proteinase inhibitor, miropin (protein)
Unique Ligands	CL, GOL, IOD, K, TRS, ZN

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6EU8 \| pdb_00006eu8	Download File View File

Crystal structure of Tannerella forsythia Apo HmuY analog (TFO)

Antonyuk, S.V., Strange, R.W.

(2018) Biosci Rep 38:

Released	2018-10-24
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Tannerella forsythia
Macromolecule	Putative heme binding protein (protein)
Unique Ligands	MLI

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6QRO \| pdb_00006qro	Download File View File

Crystal structure of Tannerella forsythia glutaminyl cyclase

Linnert, M., Piechotta, A., Parthier, C., Taudte, N., Kolenko, P., Rahfeld, J., Potempa, J., Stubbs, M.T.

(2021) J Biological Chem 296: 100263-100263

Released	2019-03-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Tannerella forsythia 92A2
Macromolecule	Glutamine cyclotransferase (protein)
Unique Ligands	SO4, ZN

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6R7U \| pdb_00006r7u	Download File View File

Selenomethionine variant of Tannerella forsythia promirolysin mutant E225A

Rodriguez-Banqueri, A., Guevara, T., Ksiazek, M., Potempa, J., Gomis-Ruth, F.X.

(2020) IUCrJ 7: 18-29

Released	2020-02-05
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Tannerella forsythia
Macromolecule	Mirolysin (protein)
Unique Ligands	BO3, CA, GOL, ZN

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6R7V \| pdb_00006r7v	Download File View File

Tannerella forsythia promirolysin mutant E225A

Rodriguez-Banqueri, A., Guevara, T., Ksiazek, M., Potempa, J., Gomis-Ruth, F.X.

(2020) IUCrJ 7: 18-29

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Tannerella forsythia
Macromolecule	Mirolysin (protein)
Unique Ligands	CA, GOL, ZN

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6R7W \| pdb_00006r7w	Download File View File

Tannerella forsythia mature mirolysin in complex with a cleaved peptide.

Rodriguez-Banqueri, A., Guevara, T., Ksiazek, M., Potempa, J., Gomis-Ruth, F.X.

(2020) IUCrJ 7: 18-29

Released	2019-11-13
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Tannerella forsythia Tannerella forsythia 92A2
Macromolecule	Mirolysin (protein) Putative lipoprotein (protein)
Unique Ligands	CA, CIT, EOH, ZN

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7OD0 \| pdb_00007od0	Download File View File

Mirolysin in complex with compound 9

Zak, K.M., Bostock, M.J., Ksiazek, M.

(2021) J Enzyme Inhib Med Chem 36: 1267-1281

Released	2021-08-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Tannerella forsythia
Macromolecule	Mirolysin (protein)
Unique Ligands	ACT, CA, CL, EDO, V7Q, ZN

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7QXO \| pdb_00007qxo	Download File View File

The structure of T. forsythia NanH

Rafferty, J., Stafford, G., Satur, M.

(2022) Biochem J 479: 1785-1806

Released	2022-12-07
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Tannerella forsythia
Macromolecule	BNR/Asp-box repeat protein (protein)
Unique Ligands	GHD

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7QY8 \| pdb_00007qy8	Download File View File

The structure of T. forsythia NanH

Rafferty, J., Stafford, G., Satur, M.

(2022) Biochem J 479: 1785-1806

Released	2022-12-07
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Tannerella forsythia
Macromolecule	BNR/Asp-box repeat protein (protein)
Unique Ligands	I2K

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7QY9 \| pdb_00007qy9	Download File View File

The structure of T.forsythia NanH with oseltamivir

Rafferty, J., Stafford, G., Satur, M.

(2022) Biochem J 479: 1785-1806

Released	2022-12-07
Method	X-RAY DIFFRACTION 1.92 Å
Organisms	Tannerella forsythia
Macromolecule	BNR/Asp-box repeat protein (protein)
Unique Ligands	G39

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7QYJ \| pdb_00007qyj	Download File View File

The structure of T. forsythia NanH

Rafferty, J., Stafford, G., Satur, M.

(2022) Biochem J 479: 1785-1806

Released	2022-12-07
Method	X-RAY DIFFRACTION 2.11 Å
Organisms	Tannerella forsythia
Macromolecule	BNR/Asp-box repeat protein (protein)

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7QYP \| pdb_00007qyp	Download File View File

The structure of T. forsythia NanH

Rafferty, J., Stafford, G., Satur, M.

(2022) Biochem J 479: 1785-1806

Released	2022-12-07
Method	X-RAY DIFFRACTION 1.659 Å
Organisms	Tannerella forsythia
Macromolecule	BNR/Asp-box repeat protein (protein)
Unique Ligands	EDO

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7QZ3 \| pdb_00007qz3	Download File View File

The structure of T. forsythia NanH

Rafferty, J., Stafford, G., Satur, M.

(2022) Biochem J 479: 1785-1806

Released	2022-12-07
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Tannerella forsythia
Macromolecule	BNR/Asp-box repeat protein (protein)
Unique Ligands	EPE

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8B2M \| pdb_00008b2m	Download File View File

Matrix-metallopeptidase inhibitor Potempin A (PotA) from Tannerella forsythia

Potempa, J., Ksiazek, M., Goulas, T., Cuppari, A., Rodriguez-Banqueri, A., Arolas, J.L., Lopez-Pelegrin, M., Garcia-Ferrer, I., Guevara, T.

(2023) Chem Sci 14: 869-888

Released	2022-12-21
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Tannerella forsythia
Macromolecule	Tannerella forsythia Potempin A (PotA) (protein)
Unique Ligands	NI

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8B2N \| pdb_00008b2n	Download File View File

Potempin A (PotA) from Tannerella forsythia in complex with the catalytic domain of human MMP-12

Potempa, J., Ksiazek, M., Goulas, T., Cuppari, A., Rodriguez-Banqueri, A., Arolas, J.L., Lopez-Pelegrin, M., Garcia-Ferrer, I., Guevara, T.

(2023) Chem Sci 14: 869-888

Released	2022-12-21
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens Tannerella forsythia
Macromolecule	Macrophage metalloelastase (protein) Tannerella forsythia potempin A (PotA) (protein)
Unique Ligands	CA, ZN

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8B2Q \| pdb_00008b2q	Download File View File

Matrix-metallopeptidase inhibitor Potempin A (PotA) from Tannerella forsythia in complex with T. forsythia karilysin.

Potempa, J., Ksiazek, M., Goulas, T., Cuppari, A., Rodriguez-Banqueri, A., Arolas, J.L., Lopez-Pelegrin, M., Garcia-Ferrer, I., Guevara, T.

(2023) Chem Sci 14: 869-888

Released	2022-12-21
Method	X-RAY DIFFRACTION 1.35 Å
Organisms	Tannerella forsythia
Macromolecule	Karilysin long form Kly38 (protein) Tannerella forsythia potempin A (PotA) (protein)
Unique Ligands	CA, GOL, MES, ZN

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8DHE \| pdb_00008dhe	Download File View File

Tannerella forsythia beta-glucuronidase (mL1)

Lietzan, A.D., Redinbo, M.R.

(2023) Sci Adv 9: eadg3390-eadg3390

Released	2023-05-17
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Tannerella forsythia
Macromolecule	Glycosyl hydrolase family 2, sugar bindingdomain protein (protein)
Unique Ligands	CL, EDO, GOL

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8DHL \| pdb_00008dhl	Download File View File

Tannerella forsythia beta-glucuronidase (L2)

Lietzan, A.D., Redinbo, M.R.

(2023) Sci Adv 9: eadg3390-eadg3390

Released	2023-05-17
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Tannerella forsythia
Macromolecule	Glycosyl hydrolase family 2, sugar binding domain protein (protein)
Unique Ligands	CA, EDO, NA

1 to 25 of 39 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2XS3 | pdb_00002xs3

2XS4 | pdb_00002xs4

4IN9 | pdb_00004in9

4R3V | pdb_00004r3v

5NCS | pdb_00005ncs

5NCT | pdb_00005nct

5NCU | pdb_00005ncu

5NCW | pdb_00005ncw

6EU8 | pdb_00006eu8

6QRO | pdb_00006qro

6R7U | pdb_00006r7u

6R7V | pdb_00006r7v

6R7W | pdb_00006r7w

7OD0 | pdb_00007od0

7QXO | pdb_00007qxo

7QY8 | pdb_00007qy8

7QY9 | pdb_00007qy9

7QYJ | pdb_00007qyj

7QYP | pdb_00007qyp

7QZ3 | pdb_00007qz3

8B2M | pdb_00008b2m

8B2N | pdb_00008b2n

8B2Q | pdb_00008b2q

8DHE | pdb_00008dhe

8DHL | pdb_00008dhl