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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Varroa destructor"

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Search Summary

This query matches 887 Structures.

Refinements

Structure Determination Methodology

experimental (887)

Scientific Name of Source Organism

	Homo sapiens (488)
	synthetic construct (81)
	Mus musculus (58)
	Rattus norvegicus (37)
	Escherichia coli K-12 (26)
	Severe acute respiratory syndrome coronavirus 2 (23)
	Salmonella enterica subsp. enterica serovar Typhimurium (22)
	Drosophila melanogaster (14)
	Escherichia coli (14)
	Streptomyces avidinii (13)

More...

Taxonomy

	Eukaryota (658)
	Bacteria (201)
	other sequences (81)
	Riboviria (36)
	Eukaryota (eukaryotes) (22)
	Monodnaviria (14)
	Duplodnaviria (7)
	Archaea (3)
	unclassified sequences (2)
	Riboviria (RNA viruses and viroids) (1)

Experimental Method

	X-RAY DIFFRACTION (793)
	SOLUTION NMR (76)
	ELECTRON MICROSCOPY (16)
	SOLID-STATE NMR (5)

Polymer Entity Type

	Protein (887)
	RNA (3)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (166)
	1.5 - 2.0 (349)
	2.0 - 2.5 (177)
	2.5 - 3.0 (82)
	3.0 - 3.5 (26)
	3.5 - 4.0 (4)
	4.0 - 4.5 (2)
	> 4.5 (3)

Release Date

	1995 - 1999 (24)
	2000 - 2004 (16)
	2005 - 2009 (57)
	2010 - 2014 (120)
	2015 - 2019 (163)
	2020 - 2024 (487)
	2025 - 2029 (20)

Enzyme Classification Name

	Hydrolases (98)
	Transferases (64)
	Isomerases (32)
	Lyases (3)
	Oxidoreductases (3)
	Ligases (2)

Membrane Protein Annotation

	MemProtMD (5)
	PDBTM (4)
	mpstruc (5)
	OPM (3)

Symmetry Type

	Asymmetric (591)
	Cyclic (306)
	Dihedral (24)
	Tetrahedral (3)
	Octahedral (1)

SCOP Classification

	All beta proteins (105)
	Artifacts (67)
	Alpha and beta proteins (a+b) (39)
	Alpha and beta proteins (a/b) (29)
	All alpha proteins (20)
	Multi-domain proteins (alpha and beta) (11)
	Small proteins (3)
	Peptides (1)

AllSelected

1 to 25 of 887 Structures

Page 1 of 36

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1B05 \| pdb_00001b05	Download File View File

Structure of oligo-peptide binding protein complexed with LYS-CYS-LYS

Tame, J.R.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1998-11-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PEPTIDE LYS-CYS-LYS (protein) PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN (protein)
Unique Ligands	U1

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1B0H \| pdb_00001b0h	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-NAPTHYLALANYL-LYSINE

Davies, T.G., Tame, J.R.H.

(1999) Protein Sci 8: 1432-1444

Released	1998-11-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	LYS-ALN-LYS PEPTIDE (protein) PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN (protein)
Unique Ligands	U1

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1B2H \| pdb_00001b2h	Download File View File

Oligo-Peptide Binding Protein Complexed with Lysyl-Ornithyl-Lysine

Davies, T.G., Tame, J.R.H.

(1999) Protein Sci 8: 1432-1444

Released	1998-11-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	LYS-ORN-LYS (protein) PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN (protein)
Unique Ligands	ACT, U1

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1B32 \| pdb_00001b32	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KMK

Tame, J.R.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1998-12-23
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PROTEIN (LYS-MET-LYS) (protein) PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein)
Unique Ligands	ACT, IUM

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1B3F \| pdb_00001b3f	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KHK

Tame, J.R.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1998-12-16
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PROTEIN (LYS-HIS-LYS) (protein) PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein)
Unique Ligands	IUM

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1B3G \| pdb_00001b3g	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KIK

Tame, J.R.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1998-12-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PROTEIN (LYS-ILE-LYS) (protein) PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein)
Unique Ligands	IUM

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1B3H \| pdb_00001b3h	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-CYCLOHEXYLALANYL-LYSINE

Davies, T.G., Tame, J.R.H.

(1999) Protein Sci 8: 1432-1444

Released	1998-11-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	LYS-ALC-LYS PEPTIDE (protein) PERIPLASMIC OLIGOPEPTIDE-BINDING PROTEIN (protein)
Unique Ligands	U1

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1B3L \| pdb_00001b3l	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KGK

Tame, J.R.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1998-12-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PROTEIN (LYS-GLY-LYS) (protein) PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein)
Unique Ligands	IUM

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1B40 \| pdb_00001b40	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KFK

Tame, J.R.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PROTEIN (LYS-PHE-LYS) (protein) PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein)
Unique Ligands	IUM

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1B46 \| pdb_00001b46	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KPK

Tame, J.R.H., Sleigh, S.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PROTEIN (LYS-PRO-LYS) (protein) PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein)
Unique Ligands	ACT, IUM

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1B4H \| pdb_00001b4h	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-DIAMINOBUTYRIC ACID-LYSINE

Davies, T.G., Tame, J.R.H.

(1999) Protein Sci 8: 1432-1444

Released	1998-11-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	LYS-DAB-LYS PEPTIDE (protein) PERIPLASMIC OLIGO-PEPTIDE BINDING PROTEIN (protein)
Unique Ligands	U1

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1B4Z \| pdb_00001b4z	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KDK

Tame, J.R.H., Sleigh, S.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein) PROTEIN (PEPTIDE LYS-ASP-LYS) (protein)
Unique Ligands	ACT, IUM

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1B51 \| pdb_00001b51	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KSK

Tame, J.R.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1999-01-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PROTEIN (LYS-SER-LYS) (protein) PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein)
Unique Ligands	IUM

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1B52 \| pdb_00001b52	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KTK

Tame, J.R.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1999-01-20
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PROTEIN (LYS-THR-LYS) (protein) PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein)
Unique Ligands	IUM

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1B58 \| pdb_00001b58	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KYK

Tame, J.R.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1999-01-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PROTEIN (LYS-TYR-LYS) (protein) PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein)
Unique Ligands	IUM

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1B5H \| pdb_00001b5h	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-DIAMINOPROPANOIC ACID-LYSINE

Davies, T.G., Tame, J.R.H.

(1999) Protein Sci 8: 1432-1444

Released	1998-11-18
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	LYS-DPP-LYS PEPTIDE (protein) OLIGO-PEPTIDE BINDING PROTEIN (protein)
Unique Ligands	U1

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1B5I \| pdb_00001b5i	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KNK

Tame, J.R.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PROTEIN (LYS-ASN-LYS) (protein) PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein)
Unique Ligands	U1

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1B5J \| pdb_00001b5j	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KQK

Tame, J.R.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1999-01-13
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	PROTEIN (LYS-GLN-LYS) (protein) PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein)
Unique Ligands	U1

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1B6H \| pdb_00001b6h	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-NORVALYL-LYSINE

Davies, T.G., Tame, J.R.H.

(1999) Protein Sci 8: 1432-1444

Released	1998-11-18
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	LYS-NVA-LYS PEPTIDE (protein) Periplasmic oligopeptide-binding protein (protein)
Unique Ligands	U1

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1B7H \| pdb_00001b7h	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN COMPLEXED WITH LYSYL-NORLEUCYL-LYSINE

Davies, T.G., Tame, J.R.H.

(1999) Protein Sci 8: 1432-1444

Released	1998-11-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium
Macromolecule	LYS-NLE-LYS PEPTIDE (protein) Periplasmic oligopeptide-binding protein (protein)
Unique Ligands	U1

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1B9J \| pdb_00001b9j	Download File View File

OLIGO-PEPTIDE BINDING PROTEIN (OPPA) COMPLEXED WITH KLK

Tame, J.R.H., Wilkinson, A.J.

(1999) J Mol Biology 291: 393-415

Released	1999-02-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Salmonella enterica subsp. enterica serovar Typhimurium synthetic construct
Macromolecule	PROTEIN (LYS-LEU-LYS) (protein) PROTEIN (OLIGO-PEPTIDE BINDING PROTEIN) (protein)
Unique Ligands	IUM

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1BW8 \| pdb_00001bw8	Download File View File

MU2 ADAPTIN SUBUNIT (AP50) OF AP2 ADAPTOR (SECOND DOMAIN), COMPLEXED WITH EGFR INTERNALIZATION PEPTIDE FYRALM

Owen, D.J., Evans, P.R.

(1998) Science 282: 1327-1332

Released	1998-11-25
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Rattus norvegicus
Macromolecule	PROTEIN (INTERNALIZATION SIGNAL FROM EGFR) (protein) PROTEIN (MU2 ADAPTIN SUBUNIT) (protein)

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1DPP \| pdb_00001dpp	Download File View File

DIPEPTIDE BINDING PROTEIN COMPLEX WITH GLYCYL-L-LEUCINE

Dunten, P., Mowbray, S.L.

(1995) Protein Sci 4: 2327-2334

Released	1995-12-07
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Escherichia coli
Macromolecule	DIPEPTIDE BINDING PROTEIN (protein)
Unique Ligands	GLY, LEU

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1FU5 \| pdb_00001fu5	Download File View File

NMR STRUCTURE OF THE N-SH2 DOMAIN OF THE P85 SUBUNIT OF PI3-KINASE COMPLEXED TO A DOUBLY PHOSPHORYLATED PEPTIDE DERIVED FROM POLYOMAVIRUS MIDDLE T ANTIGEN

Weber, T., Schaffhausen, B., Liu, Y., Guenther, U.L.

(2000) Biochemistry 39: 15860-15869

Released	2001-02-21
Method	SOLUTION NMR
Organisms	Murine polyomavirus (strain A2) Rattus norvegicus
Macromolecule	DOUBLY PHOSPHORYLATED MIDDLE T ANTIGEN (protein) PHOSPHATIDYLINOSITOL 3-KINASE REGULATORY ALPHA SUBUNIT (protein)