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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 3.1.3.16

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Search Summary

This query matches 461 Structures.

Refinements

Structure Determination Methodology

experimental (461)

Scientific Name of Source Organism

	Homo sapiens (303)
	Arabidopsis thaliana (56)
	Mus musculus (32)
	Drosophila melanogaster (14)
	synthetic construct (14)
	Rattus norvegicus (12)
	Microcystis aeruginosa (10)
	Citrus sinensis (9)
	Oryza sativa Japonica Group (8)
	Staphylococcus aureus (8)

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Taxonomy

	Eukaryota (433)
	Bacteria (47)
	other sequences (15)
	Eukaryota (eukaryotes) (6)
	Varidnaviria (4)
	Duplodnaviria (1)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (401)
	ELECTRON MICROSCOPY (40)
	SOLUTION NMR (20)

Polymer Entity Type

	Protein (461)
	DNA (3)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (22)
	1.5 - 2.0 (117)
	2.0 - 2.5 (142)
	2.5 - 3.0 (99)
	3.0 - 3.5 (32)
	3.5 - 4.0 (19)
	4.0 - 4.5 (4)
	> 4.5 (6)

Release Date

	1995 - 1999 (8)
	2000 - 2004 (23)
	2005 - 2009 (86)
	2010 - 2014 (104)
	2015 - 2019 (118)
	2020 - 2024 (119)
	2025 - 2029 (3)

Enzyme Classification Name

	Hydrolases (461)
	Transferases (42)
	Isomerases (14)
	Lyases (2)

Membrane Protein Annotation

	PDBTM (7)
	MemProtMD (4)
	OPM (5)
	mpstruc (4)

Symmetry Type

	Asymmetric (396)
	Cyclic (69)
	Dihedral (13)
	Octahedral (1)

SCOP Classification

	Alpha and beta proteins (a+b) (119)
	Alpha and beta proteins (a/b) (72)
	Artifacts (55)
	All alpha proteins (47)
	All beta proteins (12)
	Small proteins (2)

AllSelected

1 to 25 of 461 Structures

Page 1 of 19

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1A17 \| pdb_00001a17	Download File View File

TETRATRICOPEPTIDE REPEATS OF PROTEIN PHOSPHATASE 5

Das, A.K., Cohen, P.T.W., Barford, D.

(1998) EMBO J 17: 1192-1199

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE PROTEIN PHOSPHATASE 5 (protein)
Unique Ligands	SO4

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1A6Q \| pdb_00001a6q	Download File View File

CRYSTAL STRUCTURE OF THE PROTEIN SERINE/THREONINE PHOSPHATASE 2C AT 2 A RESOLUTION

Das, A.K., Helps, N.R., Cohen, P.T.W., Barford, D.

(1996) EMBO J 15: 6798-6809

Released	1998-05-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHATASE 2C (protein)
Unique Ligands	MN, PO4

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1AUI \| pdb_00001aui	Download File View File

HUMAN CALCINEURIN HETERODIMER

Kissinger, C.R., Parge, H.E., Knighton, D.R., Pelletier, L.A., Lewis, C.T., Tempczyk, A., Villafranca, J.E.

(1995) Nature 378: 641-644

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE PHOSPHATASE 2B (protein)
Unique Ligands	CA, FE, ZN

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1D5R \| pdb_00001d5r	Download File View File

Crystal Structure of the PTEN Tumor Suppressor

Lee, J.O., Yang, H., Georgescu, M.-M., Di Cristofano, A., Pavletich, N.P.

(1999) Cell 99: 323-334

Released	1999-11-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PHOSPHOINOSITIDE PHOSPHATASE PTEN (protein)
Unique Ligands	TLA

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1FJM \| pdb_00001fjm	Download File View File

Protein serine/threonine phosphatase-1 (alpha isoform, type 1) complexed with microcystin-LR toxin

Goldberg, J., Nairn, A.C., Kuriyan, J.

(1995) Nature 376: 745-753

Released	1996-06-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Microcystis aeruginosa Oryctolagus cuniculus
Macromolecule	PROTEIN SERINE/THREONINE PHOSPHATASE-1 (ALPHA ISOFORM, TYPE 1) (protein) microcystin LR (protein)
Unique Ligands	BME, MN

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1FPZ \| pdb_00001fpz	Download File View File

CRYSTAL STRUCTURE ANALYSIS OF KINASE ASSOCIATED PHOSPHATASE (KAP) WITH A SUBSTITUTION OF THE CATALYTIC SITE CYSTEINE (CYS140) TO A SERINE

Song, H., Hanlon, N., Brown, N.R., Noble, M.E.M., Johnson, L.N., Barford, D.

(2001) Mol Cell 7: 615-626

Released	2001-05-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	CYCLIN-DEPENDENT KINASE INHIBITOR 3 (protein)
Unique Ligands	SO4

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1FQ1 \| pdb_00001fq1	Download File View File

CRYSTAL STRUCTURE OF KINASE ASSOCIATED PHOSPHATASE (KAP) IN COMPLEX WITH PHOSPHO-CDK2

Song, H., Hanlon, N., Brown, N.R., Noble, M.E.M., Johnson, L.N., Barford, D.

(2001) Mol Cell 7: 615-626

Released	2001-05-09
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	CELL DIVISION PROTEIN KINASE 2 (protein) CYCLIN-DEPENDENT KINASE INHIBITOR 3 (protein)
Unique Ligands	ATP, MG

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1G5B \| pdb_00001g5b	Download File View File

BACTERIOPHAGE LAMBDA SER/THR PROTEIN PHOSPHATASE

Voegtli, W.C., White, D.J., Reiter, N.J., Rusnak, F., Rosenzweig, A.C.

(2000) Biochemistry 39: 15365-15374

Released	2001-03-07
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Lambdavirus lambda
Macromolecule	SERINE/THREONINE PROTEIN PHOSPHATASE (protein)
Unique Ligands	HG, MN, SO4

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1HZM \| pdb_00001hzm	Download File View File

STRUCTURE OF ERK2 BINDING DOMAIN OF MAPK PHOSPHATASE MKP-3: STRUCTURAL INSIGHTS INTO MKP-3 ACTIVATION BY ERK2

Farooq, A., Zhou, M.-M.

(2001) Mol Cell 7: 387-399

Released	2002-01-25
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DUAL SPECIFICITY PROTEIN PHOSPHATASE 6 (protein)

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1IT6 \| pdb_00001it6	Download File View File

CRYSTAL STRUCTURE OF THE COMPLEX BETWEEN CALYCULIN A AND THE CATALYTIC SUBUNIT OF PROTEIN PHOSPHATASE 1

Kita, A., Matsunaga, S., Takai, A., Kataiwa, H., Wakimoto, T., Fusetani, N., Isobe, M., Miki, K.

(2002) Structure 10: 715-724

Released	2002-05-22
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE PROTEIN PHOSPHATASE 1 GAMMA (PP1-GAMMA) CATALYTIC SUBUNIT (protein)
Unique Ligands	CYU, MN

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1J2X \| pdb_00001j2x	Download File View File

Crystal structure of RAP74 C-terminal domain complexed with FCP1 C-terminal peptide

Kamada, K., Roeder, R.G., Burley, S.K.

(2003) Proc Natl Acad Sci U S A 100: 2296-2299

Released	2003-01-30
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	RNA polymerase II CTD phosphatase (protein) Transcription initiation factor IIF, alpha subunit (protein)
Unique Ligands	SO4, ZN

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1J4X \| pdb_00001j4x	Download File View File

HUMAN VH1-RELATED DUAL-SPECIFICITY PHOSPHATASE C124S MUTANT-PEPTIDE COMPLEX

Schumacher, M.A., Todd, J.L., Tanner, K.G., Denu, J.M.

(2002) Biochemistry 41: 3009-3017

Released	2001-12-19
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	DDE(AHP)(TPO)G(PTR)VATR (protein) DUAL SPECIFICITY PROTEIN PHOSPHATASE 3 (protein)

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1JK7 \| pdb_00001jk7	Download File View File

CRYSTAL STRUCTURE OF THE TUMOR-PROMOTER OKADAIC ACID BOUND TO PROTEIN PHOSPHATASE-1

Maynes, J.T., Bateman, K.S., Cherney, M.M., Das, A.K., James, M.N.

(2001) J Biological Chem 276: 44078-44082

Released	2001-08-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE PROTEIN PHOSPHATASE PP1-GAMMA CATALYTIC SUBUNIT (protein)
Unique Ligands	BME, MN, OKA, SO4

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1M3G \| pdb_00001m3g	Download File View File

SOLUTION STRUCTURE OF THE CATALYTIC DOMAIN OF MAPK PHOSPHATASE PAC-1: INSIGHTS INTO SUBSTRATE-INDUCED ENZYMATIC ACTIVATION

Farooq, A., Zhou, M.-M.

(2003) Structure 11: 155-164

Released	2003-06-27
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	DUAL SPECIFICITY PROTEIN PHOSPHATASE 2 (protein)

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1M63 \| pdb_00001m63	Download File View File

Crystal structure of calcineurin-cyclophilin-cyclosporin shows common but distinct recognition of immunophilin-drug complexes

Huai, Q., Kim, H.-Y., Liu, Y., Zhao, Y., Mondragon, A., Liu, J.O., Ke, H.

(2002) Proc Natl Acad Sci U S A 99: 12037

Released	2002-09-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens Tolypocladium inflatum
Macromolecule	CALCINEURIN B SUBUNIT ISOFORM 1 (protein) CYCLOSPORIN A (protein) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (protein) SERINE/THREONINE PROTEIN PHOSPHATASE 2B CATALYTIC SUBUNIT, ALPHA ISOFORM (protein)
Unique Ligands	CA, FE, ZN

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1MF8 \| pdb_00001mf8	Download File View File

Crystal Structure of human calcineurin complexed with cyclosporin A and human cyclophilin

Jin, L., Harrison, S.C.

(2002) Proc Natl Acad Sci U S A 99: 13522

Released	2002-10-16
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens Tolypocladium inflatum
Macromolecule	CALCINEURIN B SUBUNIT ISOFORM 1 (protein) CALMODULIN-DEPENDENT CALCINEURIN A SUBUNIT, ALPHA ISOFORM (protein) CYCLOSPORIN A (protein) PEPTIDYL-PROLYL CIS-TRANS ISOMERASE A (protein)
Unique Ligands	CA, PO4

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1MKP \| pdb_00001mkp	Download File View File

CRYSTAL STRUCTURE OF PYST1 (MKP3)

Stewart, A.E., Dowd, S., Keyse, S., Mcdonald, N.Q.

(1999) Nat Struct Biol 6: 174-181

Released	1999-07-22
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	PYST1 (protein)
Unique Ligands	CL, MPD

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1MZK \| pdb_00001mzk	Download File View File

NMR structure of kinase-interacting FHA domain of kinase associated protein phosphatase, KAPP in Arabidopsis

Lee, G., Ding, Z., Walker, J.C., Van Doren, S.R.

(2003) Proc Natl Acad Sci U S A 100: 11261-11266

Released	2003-09-09
Method	SOLUTION NMR
Organisms	Arabidopsis thaliana
Macromolecule	KINASE ASSOCIATED PROTEIN PHOSPHATASE (protein)

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1OHC \| pdb_00001ohc	Download File View File

Structure of the proline directed phosphatase cdc14

Gray, C.H., Good, V.M., Tonks, N.K., Barford, D.

(2003) EMBO J 22: 3524

Released	2003-07-24
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	CDC14B2 PHOSPHATASE (protein)

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1OHD \| pdb_00001ohd	Download File View File

structure of cdc14 in complex with tungstate

Gray, C.H., Good, V.M., Tonks, N.K., Barford, D.

(2003) EMBO J 22: 3524

Released	2003-07-24
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	CDC14B2 PHOSPHATASE (protein)
Unique Ligands	WO4

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1OHE \| pdb_00001ohe	Download File View File

Structure of cdc14b phosphatase with a peptide ligand

Gray, C.H., Good, V.M., Tonks, N.K., Barford, D.

(2003) EMBO J 22: 3524

Released	2003-07-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	CDC14B2 PHOSPHATASE (protein) PEPTIDE LIGAND (protein)

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1ONV \| pdb_00001onv	Download File View File

NMR Structure of a Complex Containing the TFIIF Subunit RAP74 and the RNAP II CTD Phosphatase FCP1

Nguyen, B.D., Abbott, K.L., Potempa, K., Kobor, M.S., Archambault, J., Greenblatt, J., Legault, P., Omichinski, J.G.

(2003) Proc Natl Acad Sci U S A 100: 5688-5693

Released	2003-05-20
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	Transcription initiation factor IIF, alpha subunit (protein) serine phosphatase FCP1a (protein)

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1S70 \| pdb_00001s70	Download File View File

Complex between protein ser/thr phosphatase-1 (delta) and the myosin phosphatase targeting subunit 1 (MYPT1)

Kerff, F., Terrak, M., Dominguez, R.

(2004) Nature 429: 780-784

Released	2004-06-22
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Gallus gallus Homo sapiens
Macromolecule	130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130) (protein) Serine/threonine protein phosphatase PP1-beta (or delta) catalytic subunit (protein)
Unique Ligands	MN, PGE

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1S95 \| pdb_00001s95	Download File View File

Structure of serine/threonine protein phosphatase 5

Swingle, M.R., Honkanen, R.E., Ciszak, E.M.

(2004) J Biological Chem 279: 33992-33999

Released	2004-08-24
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Serine/threonine protein phosphatase 5 (protein)
Unique Ligands	MN, MPD, PO4

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1T9Z \| pdb_00001t9z	Download File View File

Three-dimensional structure of a RNA-polymerase II binding protein.

Kamenski, T., Heilmeier, S., Meinhart, A., Cramer, P.

(2004) Mol Cell 15: 399-407

Released	2004-08-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 (protein)
Unique Ligands	CIT, MG

1 to 25 of 461 Structures

Page 1 of 19

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A17 | pdb_00001a17

1A6Q | pdb_00001a6q

1AUI | pdb_00001aui

1D5R | pdb_00001d5r

1FJM | pdb_00001fjm

1FPZ | pdb_00001fpz

1FQ1 | pdb_00001fq1

1G5B | pdb_00001g5b

1HZM | pdb_00001hzm

1IT6 | pdb_00001it6

1J2X | pdb_00001j2x

1J4X | pdb_00001j4x

1JK7 | pdb_00001jk7

1M3G | pdb_00001m3g

1M63 | pdb_00001m63

1MF8 | pdb_00001mf8

1MKP | pdb_00001mkp

1MZK | pdb_00001mzk

1OHC | pdb_00001ohc

1OHD | pdb_00001ohd

1OHE | pdb_00001ohe

1ONV | pdb_00001onv

1S70 | pdb_00001s70

1S95 | pdb_00001s95

1T9Z | pdb_00001t9z