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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 3.1.7.2

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Search Summary

This query matches 9 Structures.

Refinements

Structure Determination Methodology

experimental (9)

Scientific Name of Source Organism

	Corynebacterium glutamicum ATCC 13032 (2)
	Homo sapiens (2)
	Mycobacterium tuberculosis (2)
	Drosophila melanogaster (1)
	Mycobacterium tuberculosis H37Rv (1)
	Streptococcus dysgalactiae subsp. equisimilis (1)

Taxonomy

	Bacteria (6)
	Eukaryota (3)

Experimental Method

	X-RAY DIFFRACTION (7)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (9)

Refinement Resolution (Å)

	1.5 - 2.0 (2)
	2.0 - 2.5 (3)
	2.5 - 3.0 (1)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (1)
	2010 - 2014 (2)
	2015 - 2019 (2)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (9)
	Transferases (4)

Symmetry Type

	Cyclic (7)
	Asymmetric (3)

SCOP Classification

	All alpha proteins (1)
	Alpha and beta proteins (a+b) (1)

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1 to 9 of 9 Structures

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1VJ7 \| pdb_00001vj7	Download File View File

Crystal structure of the bifunctional catalytic fragment of RelSeq, the RelA/SpoT homolog from Streptococcus equisimilis.

Hogg, T., Mechold, U., Malke, H., Cashel, M., Hilgenfeld, R.

(2004) Cell 117: 57-68

Released	2004-05-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptococcus dysgalactiae subsp. equisimilis
Macromolecule	Bifunctional RELA/SPOT (protein)
Unique Ligands	GDP, GPX, MN

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3NQW \| pdb_00003nqw	Download File View File

A metazoan ortholog of SpoT hydrolyzes ppGpp and plays a role in starvation responses

Sun, D.W., Kim, H.Y., Kim, K.J., Jeon, Y.H., Chung, J.

(2010) Nat Struct Mol Biol 17: 1188-1194

Released	2010-09-08
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Drosophila melanogaster
Macromolecule	CG11900 (protein)
Unique Ligands	MN, SO4

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3NR1 \| pdb_00003nr1	Download File View File

A metazoan ortholog of SpoT hydrolyzes ppGpp and plays a role in starvation responses

Sun, D.W., Kim, H.Y., Kim, K.J., Jeon, Y.H., Chung, J.

(2010) Nat Struct Mol Biol 17: 1188-1194

Released	2010-09-08
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	HD domain-containing protein 3 (protein)
Unique Ligands	MN

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5VXA \| pdb_00005vxa	Download File View File

Structure of the human Mesh1-NADPH complex

Rose, J., Zhou, P.

(2020) Nat Metab 2: 270-277

Released	2018-05-23
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 (protein)
Unique Ligands	BME, EDO, NA, NDP, TRS, ZN

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5XNX \| pdb_00005xnx	Download File View File

Crystallographic structure of the enzymatically active N-terminal domain of the Rel protein from Mycobacterium tuberculosis

Singal, B., Balakrishna, A.M., Manimekalai, M.S.S., Nartey, W., Gruber, G.

(2017) FEBS Lett 591: 2323-2337

Released	2017-07-19
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Mycobacterium tuberculosis H37Rv
Macromolecule	Bifunctional (p)ppGpp synthase/hydrolase RelA (protein)
Unique Ligands	MG

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6LXG \| pdb_00006lxg	Download File View File

NMR solution structure of regulatory ACT domain of the Mycobacterium tuberculosis Rel protein

Shin, J., Singal, B., Manimekalai, M.S.S., Gruber, G.

(2021) FEBS J 288: 2377-2397

Released	2020-11-04
Method	SOLUTION NMR
Organisms	Mycobacterium tuberculosis
Macromolecule	GTP pyrophosphokinase (protein)

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7DOJ \| pdb_00007doj	Download File View File

Solution structure of TGS domain of the Mycobacterium tuberculosis Rel protein

Joon, S., Singal, B., Grueber, G.

(2021) FEBS Lett 595: 3006-3018

Released	2021-12-01
Method	SOLUTION NMR
Organisms	Mycobacterium tuberculosis
Macromolecule	GTP pyrophosphokinase (protein)

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7QOC \| pdb_00007qoc	Download File View File

Se-Met derivative structure of a small alarmone hydrolase (RelH) from Corynebacterium glutamicum

Bisiak, F., Brodersen, D.E., Chrenkova, A.

(2022) J Biological Chem 298: 102142-102142

Released	2022-07-13
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	Guanosine polyphosphate pyrophosphohydrolases/synthetases (protein)
Unique Ligands	MG

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7QOD \| pdb_00007qod	Download File View File

Native structure of a small alarmone hydrolase (RelH) from Corynebacterium glutamicum

Bisiak, F., Brodersen, D.E., Chrenkova, A.

(2022) J Biological Chem 298: 102142-102142

Released	2022-07-13
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Corynebacterium glutamicum ATCC 13032
Macromolecule	Guanosine polyphosphate pyrophosphohydrolases/synthetases (protein)
Unique Ligands	MN, PG4

1 to 9 of 9 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1VJ7 | pdb_00001vj7

Crystal structure of the bifunctional catalytic fragment of RelSeq, the RelA/SpoT homolog from Streptococcus equisimilis.

3NQW | pdb_00003nqw

A metazoan ortholog of SpoT hydrolyzes ppGpp and plays a role in starvation responses

3NR1 | pdb_00003nr1

A metazoan ortholog of SpoT hydrolyzes ppGpp and plays a role in starvation responses

5VXA | pdb_00005vxa

Structure of the human Mesh1-NADPH complex

5XNX | pdb_00005xnx

Crystallographic structure of the enzymatically active N-terminal domain of the Rel protein from Mycobacterium tuberculosis

6LXG | pdb_00006lxg

NMR solution structure of regulatory ACT domain of the Mycobacterium tuberculosis Rel protein

7DOJ | pdb_00007doj

Solution structure of TGS domain of the Mycobacterium tuberculosis Rel protein

7QOC | pdb_00007qoc

Se-Met derivative structure of a small alarmone hydrolase (RelH) from Corynebacterium glutamicum

7QOD | pdb_00007qod

Native structure of a small alarmone hydrolase (RelH) from Corynebacterium glutamicum

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1VJ7 | pdb_00001vj7

3NQW | pdb_00003nqw

3NR1 | pdb_00003nr1

5VXA | pdb_00005vxa

5XNX | pdb_00005xnx

6LXG | pdb_00006lxg

7DOJ | pdb_00007doj

7QOC | pdb_00007qoc

7QOD | pdb_00007qod