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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Enzyme Classification Number = 3.6.5.2

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Search Summary

This query matches 1,242 Structures.

Refinements

Structure Determination Methodology

experimental (1,242)

Scientific Name of Source Organism

	Homo sapiens (1,155)
	Mus musculus (87)
	Rattus norvegicus (35)
	synthetic construct (26)
	Saccharomyces cerevisiae (21)
	Human immunodeficiency virus 1 (15)
	Bos taurus (8)
	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (6)
	Avena sativa (5)
	Entamoeba histolytica (5)

More...

Taxonomy

	Eukaryota (1,230)
	Bacteria (57)
	other sequences (26)
	Riboviria (15)
	Eukaryota (eukaryotes) (8)
	Duplodnaviria (4)
	Archaea (2)

Experimental Method

	X-RAY DIFFRACTION (1,113)
	ELECTRON MICROSCOPY (79)
	SOLUTION NMR (49)
	NEUTRON DIFFRACTION (1)

Polymer Entity Type

Protein (1,242)

Refinement Resolution (Å)

	1.0 - 1.5 (159)
	1.5 - 2.0 (438)
	2.0 - 2.5 (279)
	2.5 - 3.0 (166)
	3.0 - 3.5 (83)
	3.5 - 4.0 (20)
	4.0 - 4.5 (14)
	> 4.5 (34)

Release Date

	1990 - 1994 (19)
	1995 - 1999 (34)
	2000 - 2004 (81)
	2005 - 2009 (121)
	2010 - 2014 (184)
	2015 - 2019 (284)
	2020 - 2024 (480)
	2025 - 2029 (39)

Enzyme Classification Name

	Hydrolases (1,242)
	Transferases (105)
	Isomerases (37)
	Oxidoreductases (6)
	Translocases (3)

Membrane Protein Annotation

	mpstruc (15)
	PDBTM (6)
	OPM (12)
	MemProtMD (5)

Symmetry Type

	Asymmetric (1,109)
	Cyclic (172)
	Dihedral (18)
	Helical (3)

SCOP Classification

	Alpha and beta proteins (a/b) (700)
	Artifacts (204)
	All alpha proteins (111)
	All beta proteins (39)
	Alpha and beta proteins (a+b) (34)
	Coiled coil proteins (10)
	Peptides (2)

AllSelected

1 to 25 of 1,242 Structures

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121P \| pdb_0000121p	Download File View File

STRUKTUR UND GUANOSINTRIPHOSPHAT-HYDROLYSEMECHANISMUS DES C-TERMINAL VERKUERZTEN MENSCHLICHEN KREBSPROTEINS P21-H-RAS

Krengel, U., Scheffzek, K., Scherer, A., Kabsch, W., Wittinghofer, A., Pai, E.F.

(1991) Thesis

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.54 Å
Organisms	Homo sapiens
Macromolecule	H-RAS P21 PROTEIN (protein)
Unique Ligands	GCP, MG

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1A2B \| pdb_00001a2b	Download File View File

HUMAN RHOA COMPLEXED WITH GTP ANALOGUE

Ihara, K., Muraguchi, S., Kato, M., Shimizu, T., Shirakawa, M., Kuroda, S., Kaibuchi, K., Hakoshima, T.

(1998) J Biological Chem 273: 9656-9666

Released	1998-06-17
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	TRANSFORMING PROTEIN RHOA (protein)
Unique Ligands	GSP, MG

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1A4R \| pdb_00001a4r	Download File View File

G12V MUTANT OF HUMAN PLACENTAL CDC42 GTPASE IN THE GDP FORM

Rudolph, M.G., Vetter, I.R., Wittinghofer, A.

(1999) Protein Sci 8: 778-787

Released	1999-03-02
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	G25K GTP-BINDING PROTEIN (protein)
Unique Ligands	GDP, GNH, MG

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1AA9 \| pdb_00001aa9	Download File View File

HUMAN C-HA-RAS(1-171)(DOT)GDP, NMR, MINIMIZED AVERAGE STRUCTURE

Ito, Y., Yamasaki, Y., Muto, Y., Kawai, G., Nishimura, S., Miyazawa, T., Yokoyama, S., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(1997) Biochemistry 36: 9109-9119

Released	1997-07-29
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	C-HA-RAS (protein)
Unique Ligands	GDP, MG

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1AGP \| pdb_00001agp	Download File View File

THREE-DIMENSIONAL STRUCTURES AND PROPERTIES OF A TRANSFORMING AND A NONTRANSFORMING GLY-12 MUTANT OF P21-H-RAS

Franken, S.M., Scheidig, A.J., Wittinghofer, A., Goody, R.S.

(1993) Biochemistry 32: 8411-8420

Released	1994-04-30
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	C-H-RAS P21 PROTEIN (protein)
Unique Ligands	GNP, MG

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1AJE \| pdb_00001aje	Download File View File

CDC42 FROM HUMAN, NMR, 20 STRUCTURES

Feltham, J.L., Dotsch, V., Raza, S., Manor, D., Cerione, R.A., Sutcliffe, M.J., Wagner, G., Oswald, R.E.

(1997) Biochemistry 36: 8755-8766

Released	1997-11-12
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	CDC42HS (protein)

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1AM4 \| pdb_00001am4	Download File View File

COMPLEX BETWEEN CDC42HS.GMPPNP AND P50 RHOGAP (H. SAPIENS)

Rittinger, K., Walker, P., Gamblin, S.J., Smerdon, S.J.

(1997) Nature 388: 693-697

Released	1998-07-15
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	CDC42HS (protein) P50-RHOGAP (protein)
Unique Ligands	GNP, MG

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1AN0 \| pdb_00001an0	Download File View File

CDC42HS-GDP COMPLEX

Kongsaeree, P., Cerione, R., Clardy, J.

To be published

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	CDC42HS-GDP (protein)
Unique Ligands	GDP, MG

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1BKD \| pdb_00001bkd	Download File View File

COMPLEX OF HUMAN H-RAS WITH HUMAN SOS-1

Boriack-Sjodin, P.A., Margarit, S.M., Sagi, D.B., Kuriyan, J.

(1998) Nature 394: 337-343

Released	1999-01-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	H-RAS (protein) SON OF SEVENLESS-1 (protein)

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1C1Y \| pdb_00001c1y	Download File View File

CRYSTAL STRUCTURE OF RAP.GMPPNP IN COMPLEX WITH THE RAS-BINDING-DOMAIN OF C-RAF1 KINASE (RAFRBD).

Nassar, N.

(1995) Nature 375: 554-560

Released	1999-08-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	PROTO-ONCOGENE SERINE/THREONINE PROTEIN KINASE RAF-1 (protein) RAS-RELATED PROTEIN RAP-1A (protein)
Unique Ligands	CA, GTP, MG

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1CC0 \| pdb_00001cc0	Download File View File

CRYSTAL STRUCTURE OF THE RHOA.GDP-RHOGDI COMPLEX

Longenecker, K.L., Read, P., Derewenda, U., Dauter, Z., Garrard, S., Walker, L., Somlyo, A.V., Somlyo, A.P., Nakamoto, R.K., Derewenda, Z.S.

(1999) Acta Crystallogr D Biol Crystallogr 55: 1503-1515

Released	2000-01-07
Method	X-RAY DIFFRACTION 5 Å
Organisms	Homo sapiens
Macromolecule	rho GDP dissociation inhibitor alpha (protein) transforming protein rhoA (protein)
Unique Ligands	GDP, MG

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1CEE \| pdb_00001cee	Download File View File

SOLUTION STRUCTURE OF CDC42 IN COMPLEX WITH THE GTPASE BINDING DOMAIN OF WASP

Abdul-Manan, N., Aghazadeh, B., Liu, G.A., Majumdar, A., Ouerfelli, O., Rosen, M.K.

(1999) Nature 399: 379-383

Released	1999-06-30
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	GTP-BINDING RHO-LIKE PROTEIN (protein) WISKOTT-ALDRICH SYNDROME PROTEIN WASP (protein)
Unique Ligands	GCP, MG

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1CF4 \| pdb_00001cf4	Download File View File

CDC42/ACK GTPASE-BINDING DOMAIN COMPLEX

Mott, H.R., Owen, D., Nietlispach, D., Lowe, P.N., Lim, L., Laue, E.D.

(1999) Nature 399: 384-388

Released	1999-06-18
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (ACTIVATED P21CDC42HS KINASE) (protein) PROTEIN (CDC42 HOMOLOG) (protein)
Unique Ligands	GNP, MG

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1CLU \| pdb_00001clu	Download File View File

H-RAS COMPLEXED WITH DIAMINOBENZOPHENONE-BETA,GAMMA-IMIDO-GTP

Ahmadian, M.R., Zor, T., Vogt, D., Kabsch, W., Selinger, Z., Wittinghofer, A., Scheffzek, K.

(1999) Proc Natl Acad Sci U S A 96: 7065-7070

Released	1999-05-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	TRANSFORMING PROTEIN P21/H-RAS-1 (protein)
Unique Ligands	DBG, MG

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1CRP \| pdb_00001crp	Download File View File

THE SOLUTION STRUCTURE AND DYNAMICS OF RAS P21. GDP DETERMINED BY HETERONUCLEAR THREE AND FOUR DIMENSIONAL NMR SPECTROSCOPY

Kraulis, P.J., Domaille, P.J., Campbell-Burk, S.L., Van Aken, T., Laue, E.D.

(1994) Biochemistry 33: 3515-3531

Released	1994-07-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	C-H-RAS P21 PROTEIN (protein)
Unique Ligands	GDP, MG

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1CRQ \| pdb_00001crq	Download File View File

THE SOLUTION STRUCTURE AND DYNAMICS OF RAS P21. GDP DETERMINED BY HETERONUCLEAR THREE AND FOUR DIMENSIONAL NMR SPECTROSCOPY

Kraulis, P.J., Domaille, P.J., Campbell-Burk, S.L., Van Aken, T., Laue, E.D.

(1994) Biochemistry 33: 3515-3531

Released	1994-07-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	C-H-RAS P21 PROTEIN (protein)
Unique Ligands	GDP, MG

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1CRR \| pdb_00001crr	Download File View File

THE SOLUTION STRUCTURE AND DYNAMICS OF RAS P21. GDP DETERMINED BY HETERONUCLEAR THREE AND FOUR DIMENSIONAL NMR SPECTROSCOPY

Kraulis, P.J., Domaille, P.J., Campbell-Burk, S.L., Van Aken, T., Laue, E.D.

(1994) Biochemistry 33: 3515-3531

Released	1994-07-31
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	C-H-RAS P21 PROTEIN (protein)
Unique Ligands	GDP, MG

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1CTQ \| pdb_00001ctq	Download File View File

STRUCTURE OF P21RAS IN COMPLEX WITH GPPNHP AT 100 K

Scheidig, A., Burmester, C., Goody, R.S.

(1999) Structure 7: 1311-1324

Released	1999-11-15
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (TRANSFORMING PROTEIN P21/H-RAS-1) (protein)
Unique Ligands	GNP, MG

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1CXZ \| pdb_00001cxz	Download File View File

CRYSTAL STRUCTURE OF HUMAN RHOA COMPLEXED WITH THE EFFECTOR DOMAIN OF THE PROTEIN KINASE PKN/PRK1

Maesaki, R., Ihara, K., Shimizu, T., Kuroda, S., Kaibuchi, K., Hakoshima, T.

(1999) Mol Cell 4: 793-803

Released	1999-10-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (HIS-TAGGED TRANSFORMING PROTEIN RHOA(0-181)) (protein) PROTEIN (PKN) (protein)
Unique Ligands	GSP, MG

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1D8D \| pdb_00001d8d	Download File View File

CO-CRYSTAL STRUCTURE OF RAT PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH A K-RAS4B PEPTIDE SUBSTRATE AND FPP ANALOG AT 2.0A RESOLUTION

Long, S.B., Casey, P.J., Beese, L.S.

(2000) Structure 8: 209-222

Released	2000-02-09
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	K-RAS4B PEPTIDE SUBSTRATE (protein) farnesyltransferase (alpha subunit) (protein) farnesyltransferase (beta subunit) (protein)
Unique Ligands	ACT, FII, ZN

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1D8E \| pdb_00001d8e	Download File View File

Zinc-depleted FTase complexed with K-RAS4B peptide substrate and FPP analog.

Long, S.B., Casey, P.J., Beese, L.S.

(2000) Structure 8: 209-222

Released	2000-03-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	FARNESYLTRANSFERASE (ALPHA SUBUNIT) (protein) FARNESYLTRANSFERASE (BETA SUBUNIT) (protein) K-RAS4B PEPTIDE SUBSTRATE (protein)
Unique Ligands	ACT, FII

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1DOA \| pdb_00001doa	Download File View File

Structure of the rho family gtp-binding protein cdc42 in complex with the multifunctional regulator rhogdi

Hoffman, G.R., Nassar, N., Cerione, R.C.

(2000) Cell 100: 345-356

Released	2000-02-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Bos taurus Homo sapiens
Macromolecule	PROTEIN (GDP-DISSOCIATION INHIBITOR 1) (protein) PROTEIN (GTP-BINDING PROTEIN) (protein)
Unique Ligands	GDP, GER, MG

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1DPF \| pdb_00001dpf	Download File View File

CRYSTAL STRUCTURE OF A MG-FREE FORM OF RHOA COMPLEXED WITH GDP

Shimizu, T., Ihara, K., Maesaki, R., Kuroda, S., Kaibuchi, K., Hakoshima, T.

(2000) J Biological Chem 275: 18311-18317

Released	2000-06-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	RHOA (protein)
Unique Ligands	GDP

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1DS6 \| pdb_00001ds6	Download File View File

CRYSTAL STRUCTURE OF A RAC-RHOGDI COMPLEX

Scheffzek, K., Stephan, I., Jensen, O.N., Illenberger, D., Gierschik, P.

(2000) Nat Struct Biol 7: 122-126

Released	2000-07-12
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 2 (protein) RHO GDP-DISSOCIATION INHIBITOR 2 (protein)
Unique Ligands	GDP, MG

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1E0A \| pdb_00001e0a	Download File View File

Cdc42 complexed with the GTPase binding domain of p21 activated kinase

Morreale, A., Venkatesan, M., Mott, H.R., Owen, D., Nietlispach, D., Lowe, P.N., Laue, E.D.

(2000) Nat Struct Biol 7: 384

Released	2000-04-18
Method	SOLUTION NMR
Organisms	Homo sapiens Rattus norvegicus
Macromolecule	Cell division control protein 42 homolog (protein) Serine/threonine-protein kinase PAK 1 (protein)
Unique Ligands	GNP, MG

1 to 25 of 1,242 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

121P | pdb_0000121p

1A2B | pdb_00001a2b

1A4R | pdb_00001a4r

1AA9 | pdb_00001aa9

1AGP | pdb_00001agp

1AJE | pdb_00001aje

1AM4 | pdb_00001am4

1AN0 | pdb_00001an0

1BKD | pdb_00001bkd

1C1Y | pdb_00001c1y

1CC0 | pdb_00001cc0

1CEE | pdb_00001cee

1CF4 | pdb_00001cf4

1CLU | pdb_00001clu

1CRP | pdb_00001crp

1CRQ | pdb_00001crq

1CRR | pdb_00001crr

1CTQ | pdb_00001ctq

1CXZ | pdb_00001cxz

1D8D | pdb_00001d8d

1D8E | pdb_00001d8e

1DOA | pdb_00001doa

1DPF | pdb_00001dpf

1DS6 | pdb_00001ds6

1E0A | pdb_00001e0a