RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Enzyme Classification Number = 5.3.1.5

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 197 Structures.

Refinements

Structure Determination Methodology

experimental (197)

Scientific Name of Source Organism

	Streptomyces rubiginosus (124)
	Arthrobacter sp. NRRL B3728 (18)
	Piromyces sp. E2 (15)
	Actinoplanes missouriensis (14)
	Streptomyces olivochromogenes (9)
	Streptomyces diastaticus (2)
	Streptomyces sp. F-1 (2)
	Streptomyces sp. SK (2)
	Bacteroides thetaiotaomicron VPI-5482 (1)
	Geobacillus stearothermophilus (1)

More...

Taxonomy

	Bacteria (182)
	Eukaryota (15)

Experimental Method

	X-RAY DIFFRACTION (191)
	NEUTRON DIFFRACTION (10)
	ELECTRON MICROSCOPY (3)

Polymer Entity Type

Protein (197)

Refinement Resolution (Å)

	0.5 - 1.0 (10)
	1.0 - 1.5 (24)
	1.5 - 2.0 (91)
	2.0 - 2.5 (50)
	2.5 - 3.0 (23)
	3.0 - 3.5 (1)
	4.0 - 4.5 (1)

Release Date

	1985 - 1989 (1)
	1990 - 1994 (51)
	1995 - 1999 (8)
	2000 - 2004 (9)
	2005 - 2009 (6)
	2010 - 2014 (33)
	2015 - 2019 (51)
	2020 - 2024 (38)

Enzyme Classification Name

Isomerases (197)

Symmetry Type

	Dihedral (190)
	Asymmetric (8)
	Cyclic (3)

SCOP Classification

	Alpha and beta proteins (a/b) (175)
	Artifacts (2)

AllSelected

1 to 25 of 197 Structures

Page 1 of 8

Sort by

Explore in 3D

1A0C \| pdb_00001a0c	Download File View File

XYLOSE ISOMERASE FROM THERMOANAEROBACTERIUM THERMOSULFURIGENES

Gallay, O., Chopra, R., Conti, E., Brick, P., Blow, D.

To be published

Released	1998-06-03
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Thermoanaerobacterium thermosulfurigenes
Macromolecule	XYLOSE ISOMERASE (protein)
Unique Ligands	CO

Explore in 3D

1A0D \| pdb_00001a0d	Download File View File

XYLOSE ISOMERASE FROM BACILLUS STEAROTHERMOPHILUS

Gallay, O., Chopra, R., Conti, E., Brick, P., Blow, D.

To be published

Released	1998-06-03
Method	X-RAY DIFFRACTION 3 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	XYLOSE ISOMERASE (protein)
Unique Ligands	MN

Explore in 3D

1A0E \| pdb_00001a0e	Download File View File

XYLOSE ISOMERASE FROM THERMOTOGA NEAPOLITANA

Gallay, O., Chopra, R., Conti, E., Brick, P., Blow, D.

To be published

Released	1998-06-03
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Thermotoga neapolitana
Macromolecule	XYLOSE ISOMERASE (protein)
Unique Ligands	CO

Explore in 3D

1BHW \| pdb_00001bhw	Download File View File

LOW TEMPERATURE MIDDLE RESOLUTION STRUCTURE OF XYLOSE ISOMERASE FROM MASC DATA

Ramin, M., Shepard, W., Fourme, R., Kahn, R.

(1999) Acta Crystallogr D Biol Crystallogr 55: 157-167

Released	1998-11-04
Method	X-RAY DIFFRACTION 4.1 Å
Organisms	Actinoplanes missouriensis
Macromolecule	XYLOSE ISOMERASE (protein)

Explore in 3D

1BXB \| pdb_00001bxb	Download File View File

XYLOSE ISOMERASE FROM THERMUS THERMOPHILUS

Chang, C., Park, B.C., Lee, D.-S., Suh, S.W.

(1999) J Mol Biology 288: 623-634

Released	1999-02-16
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Thermus thermophilus HB8
Macromolecule	XYLOSE ISOMERASE (protein)

Explore in 3D

1BXC \| pdb_00001bxc	Download File View File

XYLOSE ISOMERASE FROM THERMUS CALDOPHILUS

Chang, C., Park, B.C., Lee, D.-S., Suh, S.W.

(1999) J Mol Biology 288: 623-634

Released	1999-02-16
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermus caldophilus
Macromolecule	XYLOSE ISOMERASE (protein)

Explore in 3D

1CLK \| pdb_00001clk	Download File View File

CRYSTAL STRUCTURE OF STREPTOMYCES DIASTATICUS NO.7 STRAIN M1033 XYLOSE ISOMERASE AT 1.9 A RESOLUTION WITH PSEUDO-I222 SPACE GROUP

Niu, L., Teng, M., Zhu, X., Gong, W.

(2000) Acta Crystallogr D Biol Crystallogr 56: 129-136

Released	2000-05-03
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptomyces diastaticus
Macromolecule	XYLOSE ISOMERASE (protein)
Unique Ligands	CO, MG

Explore in 3D

1DID \| pdb_00001did	Download File View File

OBSERVATIONS OF REACTION INTERMEDIATES AND THE MECHANISM OF ALDOSE-KETOSE INTERCONVERSION BY D-XYLOSE ISOMERASE

Collyer, C.A., Goldberg, J.D., Blow, D.M.

(1990) Proc Natl Acad Sci U S A 87: 1362-1366

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arthrobacter sp. NRRL B3728
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	DIG, MN

Explore in 3D

1DIE \| pdb_00001die	Download File View File

OBSERVATIONS OF REACTION INTERMEDIATES AND THE MECHANISM OF ALDOSE-KETOSE INTERCONVERSION BY D-XYLOSE ISOMERASE

Collyer, C.A., Viehmann, H., Goldberg, J.D., Blow, D.M.

(1990) Proc Natl Acad Sci U S A 87: 1362-1366

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Arthrobacter sp. NRRL B3728
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	MG, NOJ

Explore in 3D

1DXI \| pdb_00001dxi	Download File View File

STRUCTURE DETERMINATION OF GLUCOSE ISOMERASE FROM STREPTOMYCES MURINUS AT 2.6 ANGSTROMS RESOLUTION

Rasmussen, H., La Cour, T., Nyborg, J., Schulein, M.

(1994) Acta Crystallogr D Biol Crystallogr 50: 124-131

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Streptomyces murinus
Macromolecule	D-XYLOSE ISOMERASE (protein)
Unique Ligands	MG

Explore in 3D

1GW9 \| pdb_00001gw9	Download File View File

Tri-iodide derivative of Xylose Isomerase from Streptomyces Rubiginosus

Evans, G., Bricogne, G.

(2002) Acta Crystallogr D Biol Crystallogr 58: 976

Released	2002-06-06
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Streptomyces rubiginosus
Macromolecule	XYLOSE ISOMERASE (protein)
Unique Ligands	CA, IOD, LXC

Explore in 3D

1MNZ \| pdb_00001mnz	Download File View File

Atomic structure of Glucose isomerase

Nowak, E., Panjikar, S., Tucker, P.A.

To be published

Released	2002-09-25
Method	X-RAY DIFFRACTION 0.99 Å
Organisms	Streptomyces rubiginosus
Macromolecule	Xylose isomerase (protein)
Unique Ligands	CA, MG, MRD, TRS

Explore in 3D

1MUW \| pdb_00001muw	Download File View File

The 0.86 Angstrom Structure of Xylose Isomerase

Fenn, T.D., Ringe, D., Petsko, G.A.

To be published

Released	2002-11-06
Method	X-RAY DIFFRACTION 0.86 Å
Organisms	Streptomyces olivochromogenes
Macromolecule	XYLOSE ISOMERASE (protein)
Unique Ligands	MG, MN, OH

Explore in 3D

1O1H \| pdb_00001o1h	Download File View File

STRUCTURE OF GLUCOSE ISOMERASE DERIVATIZED WITH KR.

Nowak, E., Panjikar, S., Tucker, P.A.

To be published

Released	2002-11-27
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Streptomyces rubiginosus
Macromolecule	Xylose isomerase (protein)
Unique Ligands	CA, CL, KR, MG, MPD, TRS

Explore in 3D

1OAD \| pdb_00001oad	Download File View File

Glucose isomerase from Streptomyces rubiginosus in P21212 crystal form

Ramagopal, U.A., Dauter, M., Dauter, Z.

(2003) Acta Crystallogr D Biol Crystallogr 59: 868

Released	2003-01-30
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Streptomyces rubiginosus
Macromolecule	XYLOSE ISOMERASE (protein)
Unique Ligands	MG, MN, MPD, MQD, MRD, TRS

Explore in 3D

1QT1 \| pdb_00001qt1	Download File View File

CRYSTAL STRUCTURE OF XYLOSE ISOMERASE FROM STREPTOMYCES DIASTATICUS NO.7 M1033 AT 1.85 A RESOLUTION

Niu, L., Teng, M., Zhu, X.

(2000) Acta Crystallogr D Biol Crystallogr 56: 129-136

Released	2000-06-29
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptomyces diastaticus
Macromolecule	PROTEIN (XYLOSE ISOMERASE) (protein)
Unique Ligands	CO

Explore in 3D

1S5M \| pdb_00001s5m	Download File View File

Xylose Isomerase in Substrate and Inhibitor Michaelis States: Atomic Resolution Studies of a Metal-Mediated Hydride Shift

Fenn, T.D., Ringe, D., Petsko, G.A.

(2004) Biochemistry 43: 6464-6474

Released	2004-02-10
Method	X-RAY DIFFRACTION 0.98 Å
Organisms	Streptomyces olivochromogenes
Macromolecule	Xylose isomerase (protein)
Unique Ligands	GLC, MN, NA

Explore in 3D

1S5N \| pdb_00001s5n	Download File View File

Xylose Isomerase in Substrate and Inhibitor Michaelis States: Atomic Resolution Studies of a Metal-Mediated Hydride Shift

Fenn, T.D., Ringe, D., Petsko, G.A.

(2004) Biochemistry 43: 6464-6474

Released	2004-02-10
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Streptomyces olivochromogenes
Macromolecule	Xylose isomerase (protein)
Unique Ligands	MN, NA, OH, XYL