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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Emericellopsis salmosynnemata (3)
	Emericellopsis tubakii (3)
	Homo sapiens (3)
	Emericellopsis (1)
	Emericellopsis donezkii (1)
	Emericellopsis minima (1)
	Emericellopsis sp. 2723 (1)
	Human immunodeficiency virus 1 (1)
	Hypomyces chrysospermus (1)
	Tolypocladium sp. Sup5 PDA-1 (1)

Taxonomy

	Eukaryota (15)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (11)
	SOLUTION NMR (6)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	0.5 - 1.0 (5)
	1.0 - 1.5 (3)
	2.5 - 3.0 (2)
	4.0 - 4.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (8)
	2010 - 2014 (6)
	2015 - 2019 (2)

Symmetry Type

Asymmetric (17)

SCOP Classification

Peptides (7)

AllSelected

1 to 17 of 17 Structures

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1DLZ \| pdb_00001dlz	Download File View File

SOLUTION STRUCTURE OF THE CHANNEL-FORMER ZERVAMICIN IIB (PEPTAIBOL ANTIBIOTIC)

Balashova, T.A., Shenkarev, Z.O., Tagaev, A.A., Ovchinnikova, T.V., Raap, J., Arseniev, A.S.

(2000) FEBS Lett 466: 333

Released	2000-02-03
Method	SOLUTION NMR
Organisms	Emericellopsis salmosynnemata
Macromolecule	ZERVAMICIN IIB (protein)

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1EE7 \| pdb_00001ee7	Download File View File

NMR STRUCTURE OF THE PEPTAIBOL CHRYSOSPERMIN C BOUND TO DPC MICELLES

Anders, R., Ohlenschlager, O., Soskic, V., Wenschuh, H., Heise, B., Brown, L.R.

(2000) Eur J Biochem 267: 1784

Released	2000-05-10
Method	SOLUTION NMR
Organisms	Hypomyces chrysospermus
Macromolecule	CHRYSOSPERMIN C (protein)

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1GQ0 \| pdb_00001gq0	Download File View File

Solution structure of Antiamoebin I, a membrane channel-forming polypeptide; NMR, 20 structures

Galbraith, T.P., Harris, R., Driscoll, P.C., Wallace, B.A.

(2003) Biophys J 84: 185-194

Released	2003-01-24
Method	SOLUTION NMR
Organisms	Emericellopsis sp. 2723
Macromolecule	ANTIAMOEBIN I (protein)

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1IH9 \| pdb_00001ih9	Download File View File

NMR Structure of Zervamicin IIB (peptaibol antibiotic) Bound to DPC Micelles

Shenkarev, Z.O., Balasheva, T.A., Efremov, R.G., Yakimenko, Z.A., Ovchinnikova, T.V., Raap, J., Arseniev, A.S.

(2002) Biophys J 82: 762

Released	2002-02-13
Method	SOLUTION NMR
Organisms	Emericellopsis salmosynnemata
Macromolecule	ZERVAMICIN IIB (protein)

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1JOH \| pdb_00001joh	Download File View File

THE STRUCTURE OF ANTIAMOEBIN I, A MEMBRANE-ACTIVE PEPTIDE

Snook, C.F., Wallace, B.A.

(1998) Structure 6: 783

Released	1999-01-20
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Emericellopsis
Macromolecule	ANTIAMOEBIN I (protein)
Unique Ligands	MOH

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1OB4 \| pdb_00001ob4	Download File View File

Cephaibol A

Bunkoczi, G., Schiell, M., Vertesy, L., Sheldrick, G.M.

(2003) J Pept Sci 9: 745

Released	2003-12-11
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Emericellopsis tubakii
Macromolecule	CEPHAIBOL A (protein)
Unique Ligands	EOH

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1OB6 \| pdb_00001ob6	Download File View File

Cephaibol B

Bunkoczi, G., Schiell, M., Vertesy, L., Sheldrick, G.M.

(2003) J Pept Sci 9: 745

Released	2003-12-11
Method	X-RAY DIFFRACTION 0.89 Å
Organisms	Emericellopsis tubakii
Macromolecule	CEPHAIBOL B (protein)
Unique Ligands	ACT, EOH

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1OB7 \| pdb_00001ob7	Download File View File

Cephaibol C

Bunkoczi, G., Schiell, M., Vertesy, L., Sheldrick, G.M.

(2003) J Pept Sci 9: 745

Released	2003-12-11
Method	X-RAY DIFFRACTION 0.89 Å
Organisms	Emericellopsis tubakii
Macromolecule	CEPHAIBOL C (protein)
Unique Ligands	EOH, NA

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1R9U \| pdb_00001r9u	Download File View File

Refined structure of peptaibol zervamicin IIB in methanol solution from trans-hydrogen bond J couplings

Shenkarev, Z.O., Balashova, T.A., Yakimenko, Z.A., Ovchinnikova, T.V., Arseniev, A.S.

(2003) J Pept Sci 9: 817-826

Released	2004-11-09
Method	SOLUTION NMR
Organisms	Emericellopsis salmosynnemata
Macromolecule	ZERVAMICIN IIB (protein)

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2M1F \| pdb_00002m1f	Download File View File

NMR Structure of Antiamoebin I (peptaibol antibiotic) bound to DMPC/DHPC bicelles

Shenkarev, Z.O., Paramonov, A.S., Gizatullina, A.K.

(2013) Chem Biodivers 10: 838-863

Released	2012-12-12
Method	SOLUTION NMR
Organisms	Emericellopsis minima
Macromolecule	Antiamoebin I (protein)

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4G13 \| pdb_00004g13	Download File View File

Crystal structure of samarosporin I at 100K

Gessmann, R., Axford, D., Petratos, K.

(2012) J Pept Sci 18: 678-684

Released	2012-10-03
Method	X-RAY DIFFRACTION 0.8 Å
Macromolecule	SAMAROSPORIN I (protein)

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4G14 \| pdb_00004g14	Download File View File

Crystal structure of samarosporin I at 293K

Gessmann, R., Axford, D., Petratos, K.

(2012) J Pept Sci 18: 678-684

Released	2012-10-03
Method	X-RAY DIFFRACTION 1.09 Å
Macromolecule	SAMAROSPORIN I (protein)

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4NGH \| pdb_00004ngh	Download File View File

Crystal structure of the HIV-1 neutralizing antibody 4E10 Fab fragment in complex with a hydrocarbon-stapled peptide containing the 4e10 epitope on gp41 and a tethered phosphate moiety.

Irimia, A., Wilson, I.A.

(2014) Nat Struct Mol Biol 21: 1058-1067

Released	2014-12-03
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Homo sapiens
Macromolecule	FAB HEAVY CHAIN (protein) FAB LIGHT CHAIN (protein) MODIFIED FRAGMENT OF HIV GLYCOPROTEIN (GP41) (protein)

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4NHC \| pdb_00004nhc	Download File View File

Crystal structure of the HIV-1 neutralizing antibody 4E10 Fab fragment in complex with a hydrocarbon-stapled peptide containing the 4e10 epitope on gp41.

Irimia, A., Wilson, I.A.

(2014) Nat Struct Mol Biol 21: 1058-1067

Released	2014-12-03
Method	X-RAY DIFFRACTION 2.912 Å
Organisms	Homo sapiens
Macromolecule	FAB HEAVY CHAIN (protein) FAB LIGHT CHAIN (protein) MODIFIED FRAGMENT OF HIV GLYCOPROTEIN (GP41) (protein)
Unique Ligands	PO4, TFA

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4U6G \| pdb_00004u6g	Download File View File

Crystal structure of 10E8 Fab in complex with a hydrocarbon-stapled HIV-1 gp41 MPER peptide

Ofek, G., Bird, G.H., Walensky, L.D., Kwong, P.D.

To be published

Released	2014-12-03
Method	X-RAY DIFFRACTION 4.2012 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	10E8 Fab Heavy Chain (protein) 10E8 Fab Light Chain (protein) SAH-MPER(662-683KKK)(B,q) (protein)

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4Z0W \| pdb_00004z0w	Download File View File

Peptaibol gichigamin isolated from Tolypocladium sup_5

Du, L., Risinger, A.L., Mitchell, C.A., Stamps, B.W., Pan, N., King, J.B., Motley, J.L., Thomas, L.M., Yang, Z., Stevenson, B.S., Mooberry, S.L., Cichewicz, R.H.

To be published

Released	2016-03-30
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Tolypocladium sp. Sup5 PDA-1
Macromolecule	PEPTAIBOL GICHIGAMIN (protein)

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5MAS \| pdb_00005mas	Download File View File

Peptaibol Bergofungin A

Gessmann, R., Petratos, K.

(2017) Acta Crystallogr F Struct Biol Commun 73: 95-100

Released	2017-02-22
Method	X-RAY DIFFRACTION 0.84 Å
Organisms	Emericellopsis donezkii
Macromolecule	Bergofungin A (protein)

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1DLZ | pdb_00001dlz

SOLUTION STRUCTURE OF THE CHANNEL-FORMER ZERVAMICIN IIB (PEPTAIBOL ANTIBIOTIC)

1EE7 | pdb_00001ee7

NMR STRUCTURE OF THE PEPTAIBOL CHRYSOSPERMIN C BOUND TO DPC MICELLES

1GQ0 | pdb_00001gq0

Solution structure of Antiamoebin I, a membrane channel-forming polypeptide; NMR, 20 structures

1IH9 | pdb_00001ih9

NMR Structure of Zervamicin IIB (peptaibol antibiotic) Bound to DPC Micelles

1JOH | pdb_00001joh

THE STRUCTURE OF ANTIAMOEBIN I, A MEMBRANE-ACTIVE PEPTIDE

1OB4 | pdb_00001ob4

Cephaibol A

1OB6 | pdb_00001ob6

Cephaibol B

1OB7 | pdb_00001ob7

Cephaibol C

1R9U | pdb_00001r9u

Refined structure of peptaibol zervamicin IIB in methanol solution from trans-hydrogen bond J couplings

2M1F | pdb_00002m1f

NMR Structure of Antiamoebin I (peptaibol antibiotic) bound to DMPC/DHPC bicelles

4G13 | pdb_00004g13

Crystal structure of samarosporin I at 100K

4G14 | pdb_00004g14

Crystal structure of samarosporin I at 293K

4NGH | pdb_00004ngh

Crystal structure of the HIV-1 neutralizing antibody 4E10 Fab fragment in complex with a hydrocarbon-stapled peptide containing the 4e10 epitope on gp41 and a tethered phosphate moiety.

4NHC | pdb_00004nhc

Crystal structure of the HIV-1 neutralizing antibody 4E10 Fab fragment in complex with a hydrocarbon-stapled peptide containing the 4e10 epitope on gp41.

4U6G | pdb_00004u6g

Crystal structure of 10E8 Fab in complex with a hydrocarbon-stapled HIV-1 gp41 MPER peptide

4Z0W | pdb_00004z0w

Peptaibol gichigamin isolated from Tolypocladium sup_5

5MAS | pdb_00005mas

Peptaibol Bergofungin A

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Symmetry Type

SCOP Classification

1DLZ | pdb_00001dlz

1EE7 | pdb_00001ee7

1GQ0 | pdb_00001gq0

1IH9 | pdb_00001ih9

1JOH | pdb_00001joh

1OB4 | pdb_00001ob4

1OB6 | pdb_00001ob6

1OB7 | pdb_00001ob7

1R9U | pdb_00001r9u

2M1F | pdb_00002m1f

4G13 | pdb_00004g13

4G14 | pdb_00004g14

4NGH | pdb_00004ngh

4NHC | pdb_00004nhc

4U6G | pdb_00004u6g

4Z0W | pdb_00004z0w

5MAS | pdb_00005mas