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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Chem Comp Monomers (Polymer Entity Container Identifiers) = "GTP"

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Search Summary

This query matches 253 Structures.

Refinements

Structure Determination Methodology

experimental (253)

Scientific Name of Source Organism

	Homo sapiens (67)
	synthetic construct (56)
	Escherichia coli (25)
	Xenopus laevis (10)
	Escherichia coli K-12 (9)
	unidentified eubacterium clone A70 (9)
	Bacillus subtilis (8)
	Thermus thermophilus (7)
	Acidothermus cellulolyticus 11B (6)
	Mesorhizobium loti (6)

More...

Taxonomy

	Bacteria (106)
	Eukaryota (96)
	other sequences (56)
	Riboviria (13)
	Archaea (5)
	Duplodnaviria (5)
	Monodnaviria (1)
	unclassified bacterial viruses (1)

Experimental Method

	X-RAY DIFFRACTION (206)
	ELECTRON MICROSCOPY (46)
	SOLUTION NMR (1)

Polymer Entity Type

	RNA (244)
	Protein (145)
	DNA (59)
	NA-hybrid (9)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (13)
	2.0 - 2.5 (41)
	2.5 - 3.0 (89)
	3.0 - 3.5 (62)
	3.5 - 4.0 (22)
	4.0 - 4.5 (14)
	> 4.5 (10)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (7)
	2005 - 2009 (29)
	2010 - 2014 (51)
	2015 - 2019 (60)
	2020 - 2024 (102)
	2025 - 2029 (3)

Enzyme Classification Name

	Transferases (61)
	Hydrolases (22)
	Ligases (9)
	Lyases (4)

Symmetry Type

	Asymmetric (129)
	Cyclic (14)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a+b) (17)
	All alpha proteins (3)
	Alpha and beta proteins (a/b) (1)
	All beta proteins (1)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 253 Structures

Page 1 of 11

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1HC8 \| pdb_00001hc8	Download File View File

CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX

Conn, G.L., Draper, D.E., Lattman, E.E., Gittis, A.G.

(2002) J Mol Biology 318: 963

Released	2002-05-23
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Escherichia coli Geobacillus stearothermophilus
Macromolecule	RIBOSOMAL PROTEIN L11 (protein) 58 NUCLEOTIDE RIBOSOMAL 23S RNA DOMAIN (nucleic acid)
Unique Ligands	K, MG, OS

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1L2X \| pdb_00001l2x	Download File View File

Atomic Resolution Crystal Structure of a Viral RNA Pseudoknot

Egli, M., Minasov, G., Su, L., Rich, A.

(2002) Proc Natl Acad Sci U S A 99: 4302-4307

Released	2002-03-22
Method	X-RAY DIFFRACTION 1.25 Å
Macromolecule	RNA pseudoknot (nucleic acid)
Unique Ligands	K, MG, NA

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1L3D \| pdb_00001l3d	Download File View File

Low Resolution Crystal Structure of a Viral RNA Pseudoknot

Egli, M., Minasov, G., Su, L., Rich, A.

(2002) Proc Natl Acad Sci U S A 99: 4302-4307

Released	2002-03-22
Method	X-RAY DIFFRACTION 2.85 Å
Macromolecule	RNA pseudoknot (nucleic acid)

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1M5K \| pdb_00001m5k	Download File View File

Crystal structure of a hairpin ribozyme in the catalytically-active conformation

Rupert, P.B., Ferre-D'Amare, A.R.

(2002) Science 298: 1421-1424

Released	2002-08-02
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	PROTEIN (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A) (protein) RNA HAIRPIN RIBOZYME (nucleic acid) RNA INHIBITOR SUBSTRATE (nucleic acid)
Unique Ligands	CA, CL

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1QLN \| pdb_00001qln	Download File View File

STRUCTURE OF A TRANSCRIBING T7 RNA POLYMERASE INITIATION COMPLEX

Cheetham, G.M.T., Steitz, T.A.

(1999) Science 286: 2305

Released	2000-02-04
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia phage T7
Macromolecule	BACTERIOPHAGE T7 RNA POLYMERASE (protein) DNA (5- D (PCPTPCPCPCPTPAPTPAPGPTPGPAPGPTPCPGPTP* APTPTPA)-3) (nucleic acid) DNA (5-D(PTPAPAPTPAPCPGPAPCPTPCPAPCPTPA)-3) (nucleic acid) RNA (5- R(PPPGPGP*G)-3) (nucleic acid)

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1QZW \| pdb_00001qzw	Download File View File

Crystal structure of the complete core of archaeal SRP and implications for inter-domain communication

Rosendal, K.R., Wild, K., Montoya, G., Sinning, I.

(2003) Proc Natl Acad Sci U S A 100: 14701-14706

Released	2003-11-18
Method	X-RAY DIFFRACTION 4.1 Å
Organisms	Saccharolobus solfataricus
Macromolecule	Signal recognition 54 kDa protein (protein) 7S RNA (nucleic acid)

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1U6B \| pdb_00001u6b	Download File View File

CRYSTAL STRUCTURE OF A SELF-SPLICING GROUP I INTRON WITH BOTH EXONS

Adams, P.L., Stahley, M.R., Kosek, A.B., Wang, J., Strobel, S.A.

(2004) Nature 430: 45-50

Released	2004-08-10
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) 197-MER (nucleic acid) 5'-R(APAPGPCPCPAPCPAPCPAPAPAPCPCPAPGPAPCPGP GPCPC)-3' (nucleic acid) 5'-R(CPAP*(5MU))-3' (nucleic acid)
Unique Ligands	K, MG

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1XJR \| pdb_00001xjr	Download File View File

The Structure of a Rigorously Conserved RNA Element Within the SARS Virus Genome

Robertson, M.P., Igel, H., Baertsch, R., Haussler, D., Ares Jr., M., Scott, W.G.

(2005) PLoS Biol 3: 86-94

Released	2005-02-01
Method	X-RAY DIFFRACTION 2.7 Å
Macromolecule	s2m RNA (nucleic acid)
Unique Ligands	MG

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1Y39 \| pdb_00001y39	Download File View File

Co-evolution of protein and RNA structures within a highly conserved ribosomal domain

Dunstan, M.S., GuhaThakurta, D., Draper, D.E., Conn, G.L.

(2005) Chem Biol 12: 201-206

Released	2005-03-22
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	50S ribosomal protein L11 (protein) 58 Nucleotide Ribosomal 23S RNA Domain (nucleic acid)
Unique Ligands	3CO, GOL, K, MG

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1ZZN \| pdb_00001zzn	Download File View File

Crystal structure of a group I intron/two exon complex that includes all catalytic metal ion ligands.

Stahley, M.R., Strobel, S.A.

(2005) Science 309: 1587-1590

Released	2005-08-30
Method	X-RAY DIFFRACTION 3.37 Å
Organisms	Homo sapiens
Macromolecule	U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A RNA BINDING DOMAIN (protein) 197-MER (nucleic acid) 5'-R(APAPGPCPCPAPCPAPCPAPAPAPCPCPAPGPAPCPGPGPCPC)-3' (nucleic acid) 5'-R(CPAP*(5MU))-3' (nucleic acid)
Unique Ligands	K, MG

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2GDI \| pdb_00002gdi	Download File View File

Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate

Serganov, A.

(2006) Nature 441: 1167-1171

Released	2006-07-04
Method	X-RAY DIFFRACTION 2.05 Å
Macromolecule	TPP riboswitch (nucleic acid)
Unique Ligands	K, MG, NA, TPP

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2M58 \| pdb_00002m58	Download File View File

Structure of 2'-5' AG1 lariat forming ribozyme in its inactive state

Carlomagno, T., Amata, I., Codutti, L., Falb, M., Fohrer, J., Simon, B.

(2013) J Am Chem Soc 135: 4403-4411

Released	2013-04-03
Method	SOLUTION NMR
Organisms	synthetic construct
Macromolecule	RNA (59-MER) (nucleic acid)

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2NZ4 \| pdb_00002nz4	Download File View File

Structural investigation of the GlmS ribozyme bound to its catalytic cofactor

Cochrane, J.C.

(2007) Chem Biol 14: 97-105

Released	2007-01-16
Method	X-RAY DIFFRACTION 2.498 Å
Organisms	Homo sapiens
Macromolecule	U1 Small Nuclear Ribonucleoprotein A (protein) GlmS ribozyme (nucleic acid) substrate strand RNA 13-mer (nucleic acid)
Unique Ligands	GLP, MG

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2OEU \| pdb_00002oeu	Download File View File

Full-length hammerhead ribozyme with Mn(II) bound

Martick, M., Scott, W.G.

(2008) Chem Biol 15: 332-342

Released	2007-02-20
Method	X-RAY DIFFRACTION 2 Å
Macromolecule	5'-R(GPGPCPGPUP(OMC)PCPUPGPGP(5BU)PAPUPCPCPAPAPUPCP(DC))-3' (nucleic acid) Hammerhead Ribozyme (nucleic acid)
Unique Ligands	MN

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2QUS \| pdb_00002qus	Download File View File

Hammerhead Ribozyme G12A mutant pre-cleavage

Chi, Y.I., Scott, W.G., Kim, S.H.

(2008) PLoS Biol 6: e234-e234

Released	2008-07-15
Method	X-RAY DIFFRACTION 2.4 Å
Macromolecule	Hammerhead ribozyme (nucleic acid)
Unique Ligands	MG

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2QUW \| pdb_00002quw	Download File View File

Hammerhead Ribozyme G12A mutant after cleavage

Chi, Y.I., Scott, W.G., Kim, S.H.

(2008) PLoS Biol 6: e234-e234

Released	2008-07-15
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	Hammerhead ribozyme, cleaved fragment (nucleic acid)
Unique Ligands	MG

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2YIE \| pdb_00002yie	Download File View File

Crystal structure of a F. nucleatum FMN riboswitch bound to FMN

Vicens, Q., Mondragon, E., Batey, R.T.

(2011) Nucleic Acids Res 39: 8586

Released	2011-08-31
Method	X-RAY DIFFRACTION 2.941 Å
Organisms	Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Macromolecule	FMN RIBOSWITCH (nucleic acid)
Unique Ligands	FMN, K, MG

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2YIF \| pdb_00002yif	Download File View File

Crystal structure of a F. nucleatum FMN riboswitch - Free state

Vicens, Q., Mondragon, E., Batey, R.T.

(2011) Nucleic Acids Res 39: 8586

Released	2011-08-31
Method	X-RAY DIFFRACTION 3.298 Å
Organisms	Fusobacterium nucleatum subsp. nucleatum ATCC 25586
Macromolecule	FMN RIBOSWITCH (nucleic acid)
Unique Ligands	K, MG

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3BO2 \| pdb_00003bo2	Download File View File

A relaxed active site following exon ligation by a group I intron

Lipchock, S.V., Strobel, S.A.

(2008) Proc Natl Acad Sci U S A 105: 5699-5704

Released	2008-04-01
Method	X-RAY DIFFRACTION 3.31 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Group I intron P9 (nucleic acid) RNA (5'-R(APAPGPCPCPAPCPAPCPAPAPAPCPCPAPG)-3') (nucleic acid) RNA (5'-R(APCPGPGPCPC)-3') (nucleic acid) RNA (5'-R(CPAP*U)-3') (nucleic acid)
Unique Ligands	MG

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3BO3 \| pdb_00003bo3	Download File View File

A relaxed active site following exon ligation by a group I intron

Lipchock, S.V., Strobel, S.A.

(2008) Proc Natl Acad Sci U S A 105: 5699-5704

Released	2008-04-01
Method	X-RAY DIFFRACTION 3.4 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Group I intron P9 (nucleic acid) RNA (5'-R(APAPGPCPCPAPCPAPCPAPAPAPCPCPAPG)-3') (nucleic acid) RNA (5'-R(CPAPUPAPCPGPGPCP*C)-3') (nucleic acid)
Unique Ligands	K, MG

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3BO4 \| pdb_00003bo4	Download File View File

A relaxed active site following exon ligation by a group I intron

Lipchock, S.V., Strobel, S.A.

(2008) Proc Natl Acad Sci U S A 105: 5699-5704

Released	2008-04-01
Method	X-RAY DIFFRACTION 3.33 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) Group I intron P9 (nucleic acid) DNA/RNA (5'-R(APAPGPCPCPAPCPAPCPAPAPAPCPCPA)-D(PDG)-3') (hybrid) DNA/RNA (5'-R(CPA)-D(PDU)-R(PAPCPGPGPCP*C)-3') (hybrid)
Unique Ligands	K, MG

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3CUL \| pdb_00003cul	Download File View File

Aminoacyl-tRNA synthetase ribozyme

Xiao, H., Murakami, H., Suga, H., Ferre-D'Amare, A.R.

(2008) Nature 454: 358-361

Released	2008-06-24
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) RNA (92-MER) (nucleic acid)
Unique Ligands	K, MG

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3CUN \| pdb_00003cun	Download File View File

Aminoacyl-tRNA synthetase ribozyme

Xiao, H., Murakami, H., Suga, H., Ferre-D'Amare, A.R.

(2008) Nature 454: 358-361

Released	2008-06-24
Method	X-RAY DIFFRACTION 3 Å
Organisms	Homo sapiens
Macromolecule	U1 small nuclear ribonucleoprotein A (protein) RNA (92-MER) (nucleic acid)
Unique Ligands	CO, K, MG