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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 25 Structures.

Refinements

Structure Determination Methodology

experimental (25)

Scientific Name of Source Organism

	synthetic construct (9)
	Emericellopsis salmosynnemata (3)
	Emericellopsis tubakii (3)
	Pseudomonas sp. 101 (3)
	Saccharomyces cerevisiae S288C (3)
	Bacillus sp. MN-32 (2)
	Alicyclobacillus sendaiensis (1)
	Emericellopsis (1)
	Emericellopsis donezkii (1)
	Emericellopsis minima (1)

More...

Taxonomy

	Eukaryota (15)
	other sequences (9)
	Bacteria (7)
	Riboviria (1)

Experimental Method

	X-RAY DIFFRACTION (20)
	SOLUTION NMR (5)

Polymer Entity Type

Protein (25)

Refinement Resolution (Å)

	0.5 - 1.0 (6)
	1.0 - 1.5 (4)
	1.5 - 2.0 (5)
	2.0 - 2.5 (1)
	2.5 - 3.0 (4)

Release Date

	1985 - 1989 (1)
	1990 - 1994 (1)
	1995 - 1999 (1)
	2000 - 2004 (10)
	2010 - 2014 (4)
	2015 - 2019 (7)
	2020 - 2024 (1)

Enzyme Classification Name

Hydrolases (11)

Symmetry Type

	Asymmetric (21)
	Cyclic (4)

SCOP Classification

	Peptides (7)
	Alpha and beta proteins (a/b) (3)
	All beta proteins (1)

AllSelected

1 to 25 of 25 Structures

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1AMT \| pdb_00001amt	Download File View File

Crystal structure of alamethicin at 1.5 angstrom resolution

Fox, R.O., Richards, F.M.

(1982) Nature 300: 325

Released	1988-10-09
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Trichoderma viride
Macromolecule	ALAMETHICIN F30 (protein)
Unique Ligands	CCN, MOH

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1DLZ \| pdb_00001dlz	Download File View File

SOLUTION STRUCTURE OF THE CHANNEL-FORMER ZERVAMICIN IIB (PEPTAIBOL ANTIBIOTIC)

Balashova, T.A., Shenkarev, Z.O., Tagaev, A.A., Ovchinnikova, T.V., Raap, J., Arseniev, A.S.

(2000) FEBS Lett 466: 333

Released	2000-02-03
Method	SOLUTION NMR
Organisms	Emericellopsis salmosynnemata
Macromolecule	ZERVAMICIN IIB (protein)

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1GQ0 \| pdb_00001gq0	Download File View File

Solution structure of Antiamoebin I, a membrane channel-forming polypeptide; NMR, 20 structures

Galbraith, T.P., Harris, R., Driscoll, P.C., Wallace, B.A.

(2003) Biophys J 84: 185-194

Released	2003-01-24
Method	SOLUTION NMR
Organisms	Emericellopsis sp. 2723
Macromolecule	ANTIAMOEBIN I (protein)

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1GTJ \| pdb_00001gtj	Download File View File

Crystal structure of the thermostable serine-carboxyl type proteinase, kumamolisin (KSCP) - complex with Ac-Ile-Ala-Phe-cho

Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.

(2002) Structure 10: 865

Released	2002-06-13
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Bacillus sp. MN-32 synthetic construct
Macromolecule	ALDEHYDE INHIBITOR (protein) KUMAMOLYSIN (protein)
Unique Ligands	CA, SO4

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1GTL \| pdb_00001gtl	Download File View File

The thermostable serine-carboxyl type proteinase, kumamolisin (KSCP) - complex with Ac-Ile-Pro-Phe-cho

Comellas-Bigler, M., Fuentes-Prior, P., Maskos, K., Huber, R., Oyama, H., Uchida, K., Dunn, B.M., Oda, K., Bode, W.

(2002) Structure 10: 865

Released	2002-06-13
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Bacillus sp. MN-32 synthetic construct
Macromolecule	ALDEHYDE INHIBITOR (protein) KUMAMOLYSIN (protein)
Unique Ligands	CA, SO4

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1IH9 \| pdb_00001ih9	Download File View File

NMR Structure of Zervamicin IIB (peptaibol antibiotic) Bound to DPC Micelles

Shenkarev, Z.O., Balasheva, T.A., Efremov, R.G., Yakimenko, Z.A., Ovchinnikova, T.V., Raap, J., Arseniev, A.S.

(2002) Biophys J 82: 762

Released	2002-02-13
Method	SOLUTION NMR
Organisms	Emericellopsis salmosynnemata
Macromolecule	ZERVAMICIN IIB (protein)

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1JOH \| pdb_00001joh	Download File View File

THE STRUCTURE OF ANTIAMOEBIN I, A MEMBRANE-ACTIVE PEPTIDE

Snook, C.F., Wallace, B.A.

(1998) Structure 6: 783

Released	1999-01-20
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Emericellopsis
Macromolecule	ANTIAMOEBIN I (protein)
Unique Ligands	MOH

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1OB4 \| pdb_00001ob4	Download File View File

Cephaibol A

Bunkoczi, G., Schiell, M., Vertesy, L., Sheldrick, G.M.

(2003) J Pept Sci 9: 745

Released	2003-12-11
Method	X-RAY DIFFRACTION 0.95 Å
Organisms	Emericellopsis tubakii
Macromolecule	CEPHAIBOL A (protein)
Unique Ligands	EOH

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1OB6 \| pdb_00001ob6	Download File View File

Cephaibol B

Bunkoczi, G., Schiell, M., Vertesy, L., Sheldrick, G.M.

(2003) J Pept Sci 9: 745

Released	2003-12-11
Method	X-RAY DIFFRACTION 0.89 Å
Organisms	Emericellopsis tubakii
Macromolecule	CEPHAIBOL B (protein)
Unique Ligands	ACT, EOH

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1OB7 \| pdb_00001ob7	Download File View File

Cephaibol C

Bunkoczi, G., Schiell, M., Vertesy, L., Sheldrick, G.M.

(2003) J Pept Sci 9: 745

Released	2003-12-11
Method	X-RAY DIFFRACTION 0.89 Å
Organisms	Emericellopsis tubakii
Macromolecule	CEPHAIBOL C (protein)
Unique Ligands	EOH, NA

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1R9U \| pdb_00001r9u	Download File View File

Refined structure of peptaibol zervamicin IIB in methanol solution from trans-hydrogen bond J couplings

Shenkarev, Z.O., Balashova, T.A., Yakimenko, Z.A., Ovchinnikova, T.V., Arseniev, A.S.

(2003) J Pept Sci 9: 817-826

Released	2004-11-09
Method	SOLUTION NMR
Organisms	Emericellopsis salmosynnemata
Macromolecule	ZERVAMICIN IIB (protein)

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1SIO \| pdb_00001sio	Download File View File

Structure of Kumamolisin-As complexed with a covalently-bound inhibitor, AcIPF

Li, M., Wlodawer, A., Gustchina, A., Tsuruoka, N., Ashida, M., Minakata, H., Oyama, H., Oda, K., Nishino, T., Nakayama, T.

(2004) J Biological Chem 279: 21500-21510

Released	2004-03-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Alicyclobacillus sendaiensis
Macromolecule	Ace-ILE-PRO-PHL peptide inhibitor (protein) kumamolisin-As (protein)
Unique Ligands	CA, SO4

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2M1F \| pdb_00002m1f	Download File View File

NMR Structure of Antiamoebin I (peptaibol antibiotic) bound to DMPC/DHPC bicelles

Shenkarev, Z.O., Paramonov, A.S., Gizatullina, A.K.

(2013) Chem Biodivers 10: 838-863

Released	2012-12-12
Method	SOLUTION NMR
Organisms	Emericellopsis minima
Macromolecule	Antiamoebin I (protein)

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3SGA \| pdb_00003sga	Download File View File

STRUCTURES OF PRODUCT AND INHIBITOR COMPLEXES OF STREPTOMYCES GRISEUS PROTEASE A AT 1.8 ANGSTROMS RESOLUTION. A MODEL FOR SERINE PROTEASE CATALYSIS

Sielecki, A.R., James, M.N.G.

(1980) J Mol Biology 144: 43-88

Released	1991-10-15
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces griseus
Macromolecule	ACE-PRO-ALA-PRO-PHE-ALDEHYDE (protein) PROTEINASE A (SGPA) (protein)

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4BY8 \| pdb_00004by8	Download File View File

Microheterogeneous Paracelsin-X from Trichoderma reesei

Gessmann, R., Petratos, K.

To be published

Released	2013-08-21
Method	X-RAY DIFFRACTION 0.94 Å
Organisms	Trichoderma reesei
Macromolecule	PARACELSIN-X (protein)
Unique Ligands	MOH

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4G13 \| pdb_00004g13	Download File View File

Crystal structure of samarosporin I at 100K

Gessmann, R., Axford, D., Petratos, K.

(2012) J Pept Sci 18: 678-684

Released	2012-10-03
Method	X-RAY DIFFRACTION 0.8 Å
Macromolecule	SAMAROSPORIN I (protein)

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4G14 \| pdb_00004g14	Download File View File

Crystal structure of samarosporin I at 293K

Gessmann, R., Axford, D., Petratos, K.

(2012) J Pept Sci 18: 678-684

Released	2012-10-03
Method	X-RAY DIFFRACTION 1.09 Å
Macromolecule	SAMAROSPORIN I (protein)

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4Y75 \| pdb_00004y75	Download File View File

Yeast 20S proteasome in complex with Ac-PAF-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MES, MG

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4Y77 \| pdb_00004y77	Download File View File

Yeast 20S proteasome in complex with Ac-LAF-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MES, MG

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4Y8O \| pdb_00004y8o	Download File View File

Yeast 20S proteasome beta7-delta7_Cter mutant in complex with Ac-PAF-ep

Huber, E.M., Groll, M.

(2015) J Am Chem Soc 137: 7835-7842

Released	2015-06-17
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Saccharomyces cerevisiae S288C synthetic construct
Macromolecule	Unique protein chains: 15
Unique Ligands	CL, MES, MG

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5MAS \| pdb_00005mas	Download File View File

Peptaibol Bergofungin A

Gessmann, R., Petratos, K.

(2017) Acta Crystallogr F Struct Biol Commun 73: 95-100

Released	2017-02-22
Method	X-RAY DIFFRACTION 0.84 Å
Organisms	Emericellopsis donezkii
Macromolecule	Bergofungin A (protein)

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6M8W \| pdb_00006m8w	Download File View File

PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR AIAF

Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Goldfarb, N.E., Dunn, B.M., Oda, K.

(2001) Biochemistry 40: 15602-15611

Released	2018-10-24
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Pseudomonas sp. 101 synthetic construct
Macromolecule	AIAF PEPTIDE INHIBITOR (protein) SEDOLISIN (protein)
Unique Ligands	CA, CL, GOL

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6M8Y \| pdb_00006m8y	Download File View File

PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR AIPF

Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Goldfarb, N.E., Dunn, B.M., Oda, K.

(2001) Biochemistry 40: 15602-15611

Released	2018-10-24
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Pseudomonas sp. 101 synthetic construct
Macromolecule	AIPF PEPTIDE INHIBITOR (protein) SEDOLISIN (protein)
Unique Ligands	CA, CL, GOL

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6M9D \| pdb_00006m9d	Download File View File

PSEUDOMONAS SERINE-CARBOXYL PROTEINASE (SEDOLISIN) COMPLEXED WITH THE INHIBITOR Chymostatin

Wlodawer, A., Li, M., Gustchina, A., Dauter, Z., Uchida, K., Oyama, H., Goldfarb, N.E., Dunn, B.M., Oda, K.

(2001) Biochemistry 40: 15602-15611

Released	2018-10-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas sp. 101 synthetic construct
Macromolecule	Chymostatin A (protein) SEDOLISIN (protein)
Unique Ligands	CA

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8T7Y \| pdb_00008t7y	Download File View File

Structure of SARS CoV-2 main protease in complex with Chymostatin.

Terzyan, S., Yarla, N., Rao, C.V., Mooers, B.

To be published

Released	2024-06-26
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase nsp5 (protein) Chymostatin A (bound form) (protein)

1 to 25 of 25 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1AMT | pdb_00001amt

1DLZ | pdb_00001dlz

1GQ0 | pdb_00001gq0

1GTJ | pdb_00001gtj

1GTL | pdb_00001gtl

1IH9 | pdb_00001ih9

1JOH | pdb_00001joh

1OB4 | pdb_00001ob4

1OB6 | pdb_00001ob6

1OB7 | pdb_00001ob7

1R9U | pdb_00001r9u

1SIO | pdb_00001sio

2M1F | pdb_00002m1f

3SGA | pdb_00003sga

4BY8 | pdb_00004by8

4G13 | pdb_00004g13

4G14 | pdb_00004g14

4Y75 | pdb_00004y75

4Y77 | pdb_00004y77

4Y8O | pdb_00004y8o

5MAS | pdb_00005mas

6M8W | pdb_00006m8w

6M8Y | pdb_00006m8y

6M9D | pdb_00006m9d

8T7Y | pdb_00008t7y