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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 1606953

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Streptococcus gordonii (11)
	Streptococcus sanguinis SK36 (8)
	Streptococcus gordonii str. Challis (5)
	Streptococcus sanguinis SK1 = NCTC 7863 (3)
	Streptococcus agalactiae (1)
	Streptococcus agalactiae NEM316 (1)
	Streptococcus mitis (1)
	Streptococcus sanguinis SK678 (1)

Taxonomy

Bacteria (31)

Experimental Method

X-RAY DIFFRACTION (31)

Polymer Entity Type

Protein (31)

Refinement Resolution (Å)

	1.0 - 1.5 (6)
	1.5 - 2.0 (14)
	2.0 - 2.5 (5)
	2.5 - 3.0 (3)
	3.0 - 3.5 (1)
	3.5 - 4.0 (2)

Release Date

	2010 - 2014 (4)
	2015 - 2019 (13)
	2020 - 2024 (14)

Enzyme Classification Name

Transferases (2)

Symmetry Type

	Asymmetric (22)
	Cyclic (13)

AllSelected

1 to 25 of 31 Structures

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3QC5 \| pdb_00003qc5	Download File View File

GspB

Pyburn, T.M., Iverson, T.M.

(2011) PLoS Pathog 7: e1002112-e1002112

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Streptococcus gordonii
Macromolecule	Platelet binding protein GspB (protein)
Unique Ligands	GOL, HDZ, K, NA

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3QC6 \| pdb_00003qc6	Download File View File

GspB

Pyburn, T.M.

(2011) PLoS Pathog 7: e1002112-e1002112

Released	2011-08-10
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptococcus gordonii
Macromolecule	Platelet binding protein GspB (protein)
Unique Ligands	CA, GOL, HDZ

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4MBO \| pdb_00004mbo	Download File View File

1.65 Angstrom Crystal Structure of Serine-rich Repeat Adhesion Glycoprotein (Srr1) from Streptococcus agalactiae

Minasov, G., Shuvalova, L., Dubrovska, I., Winsor, J., Seo, H.S., Seepersaud, R., Doran, K.S., Iverson, T.M., Sullam, P.M., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2013) J Biological Chem 288: 35982-35996

Released	2013-11-06
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Streptococcus agalactiae NEM316
Macromolecule	Serine-rich Repeat Adhesion Glycoprotein (Srr1) (protein)
Unique Ligands	BME, CA, MES

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4MBR \| pdb_00004mbr	Download File View File

3.65 Angstrom Crystal Structure of Serine-rich Repeat Protein (Srr2) from Streptococcus agalactiae

(2013) J Biological Chem 288: 35982-35996

Released	2013-11-06
Method	X-RAY DIFFRACTION 3.65 Å
Organisms	Streptococcus agalactiae
Macromolecule	Serine-rich repeat protein 2 (protein)

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5E9T \| pdb_00005e9t	Download File View File

Crystal structure of GtfA/B complex

Chen, Y., Rapoport, T.A.

(2016) Proc Natl Acad Sci U S A 113: E1190-E1199

Released	2016-03-02
Method	X-RAY DIFFRACTION 2.92 Å
Organisms	Streptococcus gordonii
Macromolecule	Glycosyltransferase Gtf1 (protein) Glycosyltransferase-stabilizing protein Gtf2 (protein)
Unique Ligands	MG

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5E9U \| pdb_00005e9u	Download File View File

Crystal structure of GtfA/B complex bound to UDP and GlcNAc

Chen, Y., Rapoport, T.A.

(2016) Proc Natl Acad Sci U S A 113: E1190-E1199

Released	2016-03-02
Method	X-RAY DIFFRACTION 3.84 Å
Organisms	Streptococcus gordonii
Macromolecule	Glycosyltransferase Gtf1 (protein) Glycosyltransferase-stabilizing protein Gtf2 (protein)
Unique Ligands	MG, NAG, UDP

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5EQ2 \| pdb_00005eq2	Download File View File

Crystal Structure of the SrpA Adhesin from Streptococcus sanguinis

Loukachevitch, L.V., McCulloch, K.M., Vann, K.R., Wawrzak, Z., Anderson, S., Iverson, T.M.

(2016) J Biological Chem 291: 7230-7240

Released	2016-01-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptococcus sanguinis SK36
Macromolecule	Platelet-binding glycoprotein (protein)
Unique Ligands	ACT, CA

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5EQ3 \| pdb_00005eq3	Download File View File

Crystal structure of the SrpA adhesin from Streptococcus sanguinis with a sialyl galactose disaccharide bound

Loukachevitch, L.V., McCulloch, K.M., Vann, K.R., Wawrzak, Z., Anderson, S., Iverson, T.M.

(2016) J Biological Chem 291: 7230-7240

Released	2016-01-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptococcus sanguinis SK36
Macromolecule	Platelet-binding glycoprotein (protein)
Unique Ligands	ACT, CA, NA
Unique branched monosaccharides	MBG, NGC

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5EQ4 \| pdb_00005eq4	Download File View File

Crystal structure of the SrpA adhesin R347E mutant from Streptococcus sanguinis

Loukachevitch, L.V., McCulloch, K.M., Vann, K.R., Wawrzak, Z., Anderson, S., Iverson, T.M.

(2016) J Biological Chem 291: 7230-7240

Released	2016-01-27
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Streptococcus sanguinis SK36
Macromolecule	Platelet-binding glycoprotein (protein)
Unique Ligands	ACT, CA

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5IIY \| pdb_00005iiy	Download File View File

SrpA adhesin in complex with the Neu5Ac-galactoside disaccharide

Iverson, T.M.

(2016) Biochemistry

Released	2017-02-08
Method	X-RAY DIFFRACTION 1.888 Å
Organisms	Streptococcus sanguinis SK36
Macromolecule	Platelet-binding glycoprotein (protein)
Unique Ligands	ACT, CA
Unique branched monosaccharides	GAL, SIA

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5IJ1 \| pdb_00005ij1	Download File View File

SrpA adhesin in complex with sialyllactose

Iverson, T.M.

(2016) Biochemistry

Released	2017-02-08
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptococcus sanguinis SK36
Macromolecule	Platelet-binding glycoprotein (protein)
Unique Ligands	ACT, CA
Unique branched monosaccharides	BGC, GAL, SIA

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5IJ2 \| pdb_00005ij2	Download File View File

SrpA adhesin in complex with sialyllactosamine

Iverson, T.M.

(2016) Biochemistry

Released	2017-02-08
Method	X-RAY DIFFRACTION 1.683 Å
Organisms	Streptococcus sanguinis SK36
Macromolecule	Platelet-binding glycoprotein (protein)
Unique Ligands	ACT, CA
Unique branched monosaccharides	GAL, NAG, SIA

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5IJ3 \| pdb_00005ij3	Download File View File

SrpA adhesin in complex with sialyl T antigen

Iverson, T.M.

(2016) Biochemistry

Released	2017-02-08
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Streptococcus sanguinis SK36
Macromolecule	Platelet-binding glycoprotein (protein)
Unique Ligands	ACT, CA
Unique branched monosaccharides	A2G, GAL, SIA

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5IUC \| pdb_00005iuc	Download File View File

Crystal structure of the GspB siglec domain with sialyl T antigen bound

Loukachevitch, L.V., Fialkowski, K.P., Wawrzak, Z., Iverson, T.M.

(2011) PLoS Pathog 7: e1002112

Released	2016-04-13
Method	X-RAY DIFFRACTION 1.253 Å
Organisms	Streptococcus gordonii
Macromolecule	Platelet binding protein GspB (protein)
Unique Ligands	MG
Unique branched monosaccharides	A2G, GAL, SIA

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5KIQ \| pdb_00005kiq	Download File View File

SrpA with sialyl LewisX

Iverson, T.M.

(2016) Biochemistry

Released	2017-05-24
Method	X-RAY DIFFRACTION 1.638 Å
Organisms	Streptococcus sanguinis SK36
Macromolecule	Platelet-binding glycoprotein (protein)
Unique Ligands	ACT, CA
Unique branched monosaccharides	FUC, GAL, NAG, SIA

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5VAE \| pdb_00005vae	Download File View File

Crystal structure of accessory secretion protein 1 and 3

Chen, Y., Rapoport, T.A., Jeffrey, P.D.

(2018) J Biological Chem 293: 5360-5373

Released	2018-02-21
Method	X-RAY DIFFRACTION 3.106 Å
Organisms	Streptococcus gordonii
Macromolecule	Accessory Sec system protein Asp1 (protein) Accessory Sec system protein Asp3 (protein)

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5VAF \| pdb_00005vaf	Download File View File

Crystal structure of accessory secretion protein 1

Chen, Y., Rapoport, T.A., Jeffrey, P.D.

(2018) J Biological Chem 293: 5360-5373

Released	2018-02-21
Method	X-RAY DIFFRACTION 2.771 Å
Organisms	Streptococcus gordonii
Macromolecule	Accessory Sec system protein Asp1 (protein)

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6EF7 \| pdb_00006ef7	Download File View File

GspB Siglec domain

Iverson, T.M.

(2022) Nat Commun 13: 2753-2753

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.03 Å
Organisms	Streptococcus gordonii
Macromolecule	Platelet binding protein GspB (protein)
Unique Ligands	CA

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6EF9 \| pdb_00006ef9	Download File View File

GspB Siglec domain

Iverson, T.M.

(2022) Nat Commun 13: 2753-2753

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Streptococcus gordonii
Macromolecule	Platelet binding protein GspB - Siglec domain (protein)
Unique Ligands	FMT, NA

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6EFA \| pdb_00006efa	Download File View File

GspB Siglec + Unique domains

Iverson, T.M.

(2022) Nat Commun 13: 2753-2753

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus gordonii
Macromolecule	Platelet binding protein GspB (protein)
Unique Ligands	CA

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6EFB \| pdb_00006efb	Download File View File

GspB Siglec domain

Iverson, T.M.

(2022) Nat Commun 13: 2753-2753

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptococcus gordonii
Macromolecule	SK150 siglec + Unique (protein)
Unique Ligands	CA, GOL, SO4

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6EFC \| pdb_00006efc	Download File View File

Hsa Siglec + Unique domains (unliganded)

Iverson, T.M.

(2022) Nat Commun 13: 2753-2753

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Streptococcus gordonii str. Challis
Macromolecule	Streptococcal hemagglutinin (protein)
Unique Ligands	CA, NA

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6EFD \| pdb_00006efd	Download File View File

Hsa Siglec and Unique domains in complex with the sialyl T antigen trisaccharide

Iverson, T.M.

(2022) Nat Commun 13: 2753-2753

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Streptococcus gordonii str. Challis
Macromolecule	Streptococcal hemagglutinin (protein)
Unique Ligands	NA
Unique branched monosaccharides	A2G, GAL, SIA

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6EFF \| pdb_00006eff	Download File View File

NCTC10712

Iverson, T.M.

(2022) Nat Commun 13: 2753-2753

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus mitis
Macromolecule	NCTC10712 Siglec (protein)
Unique Ligands	ACT, CA, GOL

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6EFI \| pdb_00006efi	Download File View File

SK678 binding region (Siglec + Unique)

Iverson, T.M.

(2022) Nat Commun 13: 2753-2753

Released	2020-02-19
Method	X-RAY DIFFRACTION 1.715 Å
Organisms	Streptococcus sanguinis SK678
Macromolecule	KxYKxGKxW signal domain protein (protein)
Unique Ligands	CA, CO, EDO, GOL

1 to 25 of 31 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

3QC5 | pdb_00003qc5

3QC6 | pdb_00003qc6

4MBO | pdb_00004mbo

4MBR | pdb_00004mbr

5E9T | pdb_00005e9t

5E9U | pdb_00005e9u

5EQ2 | pdb_00005eq2

5EQ3 | pdb_00005eq3

5EQ4 | pdb_00005eq4

5IIY | pdb_00005iiy

5IJ1 | pdb_00005ij1

5IJ2 | pdb_00005ij2

5IJ3 | pdb_00005ij3

5IUC | pdb_00005iuc

5KIQ | pdb_00005kiq

5VAE | pdb_00005vae

5VAF | pdb_00005vaf

6EF7 | pdb_00006ef7

6EF9 | pdb_00006ef9

6EFA | pdb_00006efa

6EFB | pdb_00006efb

6EFC | pdb_00006efc

6EFD | pdb_00006efd

6EFF | pdb_00006eff

6EFI | pdb_00006efi