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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: PubMed ID = 20531392

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Search Summary

This query matches 103 Structures.

Refinements

Structure Determination Methodology

experimental (103)

Scientific Name of Source Organism

	Mus musculus (42)
	Coxsackievirus B1 (26)
	Homo sapiens (18)
	Severe acute respiratory syndrome coronavirus 2 (17)
	Enterovirus A71 (7)
	Dinoroseobacter phage vB_DshS-R4C (5)
	Coxsackievirus A16 (4)
	Rotavirus A (4)
	Severe acute respiratory syndrome-related coronavirus (4)
	human gammaherpesvirus 4 (4)

More...

Taxonomy

	Riboviria (71)
	Eukaryota (67)
	Duplodnaviria (13)
	Bacteria (5)
	unclassified bacterial viruses (2)
	Monodnaviria (1)
	other sequences (1)

Experimental Method

	ELECTRON MICROSCOPY (85)
	X-RAY DIFFRACTION (18)

Polymer Entity Type

	Protein (103)
	DNA (1)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (10)
	2.0 - 2.5 (4)
	2.5 - 3.0 (7)
	3.0 - 3.5 (32)
	3.5 - 4.0 (39)
	4.0 - 4.5 (2)
	> 4.5 (5)

Release Date

	2005 - 2009 (9)
	2010 - 2014 (3)
	2015 - 2019 (4)
	2020 - 2024 (79)
	2025 - 2029 (8)

Enzyme Classification Name

	Hydrolases (25)
	Transferases (23)
	Oxidoreductases (1)

Symmetry Type

	Asymmetric (40)
	Icosahedral (42)
	Cyclic (17)
	Dihedral (3)
	Helical (1)

SCOP Classification

	Coiled coil proteins (9)
	Artifacts (3)
	All beta proteins (3)
	Alpha and beta proteins (a+b) (2)

AllSelected

1 to 25 of 103 Structures

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1ZV7 \| pdb_00001zv7	Download File View File

A structure-based mechanism of SARS virus membrane fusion

Deng, Y., Liu, J., Zheng, Q., Yong, W., Dai, J., Lu, M.

(2006) Structure 14: 889-899

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	SARS coronavirus FRA
Macromolecule	spike glycoprotein (protein)
Unique Ligands	CL

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1ZV8 \| pdb_00001zv8	Download File View File

A structure-based mechanism of SARS virus membrane fusion

Deng, Y., Liu, J., Zheng, Q., Yong, W., Dai, J., Lu, M.

(2006) Structure 14: 889-899

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	E2 glycoprotein (protein)
Unique Ligands	ACT, CAC, NA, ZN

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1ZVA \| pdb_00001zva	Download File View File

A structure-based mechanism of SARS virus membrane fusion

Deng, Y., Liu, J., Zheng, Q., Yong, W., Dai, J., Lu, M.

(2006) Structure 14: 889-899

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	E2 glycoprotein (protein)

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1ZVB \| pdb_00001zvb	Download File View File

A structure-based mechanism of SARS virus membrane fusion

Deng, Y., Liu, J., Zheng, Q., Yong, W., Dai, J., Lu, M.

(2006) Structure 14: 889-899

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Severe acute respiratory syndrome-related coronavirus
Macromolecule	E2 glycoprotein (protein)

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2B1F \| pdb_00002b1f	Download File View File

Antiparallel four-stranded coiled coil specified by a 3-3-1 hydrophobic heptad repeat

Deng, Y., Liu, J., Zheng, Q., Eliezer, D., Kallenbach, N.R., Lu, M.

(2006) Structure 14: 247-255

Released	2006-01-31
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	General control protein GCN4 (protein)

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2B22 \| pdb_00002b22	Download File View File

Antiparallel four-stranded coiled coil specified by a 3-3-1 hydrophobic heptad repeat

Deng, Y., Liu, J., Zheng, Q., Eliezer, D., Kallenbach, N.R., Lu, M.

(2006) Structure 14: 247-255

Released	2006-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	General control protein GCN4 (protein)
Unique Ligands	NA

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2GUS \| pdb_00002gus	Download File View File

Conformational Transition between Four- and Five-stranded Phenylalanine Zippers Determined by a Local Packing Interaction

Liu, J., Zheng, Q., Deng, Y., Kallenbach, N.R., Lu, M.

(2006) J Mol Biology 361: 168-179

Released	2006-07-25
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Escherichia coli
Macromolecule	Major outer membrane lipoprotein (protein)

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2GUV \| pdb_00002guv	Download File View File

Conformational Transition between Four- and Five-stranded Phenylalanine Zippers Determined by a Local Packing Interaction

Liu, J., Zheng, Q., Deng, Y., Kallenbach, N.R., Lu, M.

(2006) J Mol Biology 361: 168-179

Released	2006-07-25
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Escherichia coli
Macromolecule	Major outer membrane lipoprotein (protein)

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2HY6 \| pdb_00002hy6	Download File View File

A seven-helix coiled coil

Liu, J., Zheng, Q., Deng, Y., Cheng, C.S., Kallenbach, N.R., Lu, M.

(2006) Proc Natl Acad Sci U S A 103: 15457-15462

Released	2006-10-24
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	General control protein GCN4 (protein)
Unique Ligands	HEZ

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3H8O \| pdb_00003h8o	Download File View File

Structure determination of DNA methylation lesions N1-meA and N3-meC in duplex DNA using a cross-linked host-guest system

Lu, L., Yi, C., Jian, X., Zheng, Q.

(2010) Nucleic Acids Res 38: 4415-4425

Released	2010-03-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 (protein) 5'-D(CPTPGPTPAPTP(2YR)PAPTP(MA7)PGPCPG)-3' (nucleic acid) 5'-D(TPCPGPCPTPAPTPAPAPTPAPCPA)-3' (nucleic acid)
Unique Ligands	GOL

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4FVB \| pdb_00004fvb	Download File View File

Crystal structure of EV71 2A proteinase C110A mutant

Cai, Q., Muhammad, Y., Liu, W., Gao, Z., Peng, X., Cai, Y., Wu, C., Zheng, Q., Li, J., Lin, T.

(2013) J Virol 87: 7348-7356

Released	2013-06-19
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Enterovirus A71
Macromolecule	2A proteinase (protein)
Unique Ligands	ZN

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4FVD \| pdb_00004fvd	Download File View File

Crystal structure of EV71 2A proteinase C110A mutant in complex with substrate

Cai, Q., Muhammad, Y., Liu, W., Gao, Z., Peng, X., Cai, Y., Wu, C., Zheng, Q., Li, J., Lin, T.

(2013) J Virol 87: 7348-7356

Released	2013-06-19
Method	X-RAY DIFFRACTION 1.66 Å
Organisms	Enterovirus A71
Macromolecule	10-mer peptide from 2A proteinase (protein) 2A proteinase (protein)
Unique Ligands	ZN

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5ZHY \| pdb_00005zhy	Download File View File

Structural characterization of the HCoV-229E fusion core

Zhang, W., Zheng, Q., Yan, M., Chen, X., Yang, H., Zhou, W., Rao, Z.

(2018) Biochem Biophys Res Commun 497: 705-712

Released	2018-06-06
Method	X-RAY DIFFRACTION 2.441 Å
Organisms	Human coronavirus 229E
Macromolecule	Spike glycoprotein, Spike glycoprotein (protein)

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6ISU \| pdb_00006isu	Download File View File

Crystal structure of Lys27-linked di-ubiquitin in complex with its selective interacting protein UCHL3

Ding, S., Pan, M., Zheng, Q., Ren, Y., Hong, D.

(2019) Angew Chem Int Ed Engl 58: 2627-2631

Released	2019-02-06
Method	X-RAY DIFFRACTION 1.866 Å
Organisms	Homo sapiens
Macromolecule	Ubiquitin (protein) Ubiquitin carboxyl-terminal hydrolase isozyme L3 (protein)

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6LAT \| pdb_00006lat	Download File View File

The cryo-EM structure of HEV VLP

Zheng, Q., He, M., Li, S.

(2019) Proc Natl Acad Sci U S A

Released	2019-12-04
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Paslahepevirus balayani
Macromolecule	Protein ORF2 (protein)

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6LB0 \| pdb_00006lb0	Download File View File

The cryo-EM structure of HEV VLP in complex with Fab 8C11

Zheng, Q., He, M., Li, S.

(2019) Proc Natl Acad Sci U S A

Released	2019-12-04
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Paslahepevirus balayani
Macromolecule	Protein ORF2 (protein)

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6LGL \| pdb_00006lgl	Download File View File

The atomic structure of varicella-zoster virus A-capsid

Zheng, Q., Li, S.

(2020) Nat Microbiol 5: 1542-1552

Released	2020-07-29
Method	ELECTRON MICROSCOPY 4.4 Å
Organisms	Human alphaherpesvirus 3
Macromolecule	Major capsid protein (protein) Small capsomere-interacting protein (protein) Triplex capsid protein 1 (protein) Triplex capsid protein 2 (protein)

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6LGN \| pdb_00006lgn	Download File View File

The atomic structure of varicella zoster virus C-capsid

Li, S., Zheng, Q.

(2020) Nat Microbiol 5: 1542-1552

Released	2020-07-29
Method	ELECTRON MICROSCOPY 5.3 Å
Organisms	Human alphaherpesvirus 3
Macromolecule	Major capsid protein (protein) Small capsomere-interacting protein (protein) Triplex capsid protein 1 (protein) Triplex capsid protein 2 (protein)

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7DPF \| pdb_00007dpf	Download File View File

Cryo-EM structure of Coxsackievirus B1 mature virion

Zheng, Q., Li, S.

(2021) Cell Host Microbe 29: 448-462.e5

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Coxsackievirus B1
Macromolecule	Capsid protein VP4 (protein) VP2 (protein) VP3 (protein) Virion protein 1 (protein)
Unique Ligands	PLM

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7DPG \| pdb_00007dpg	Download File View File

Cryo-EM structure of Coxsackievirus B1 empty particle

Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q., Xia, N.

(2021) Cell Host Microbe 29: 448-462.e5

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.4 Å
Organisms	Coxsackievirus B1
Macromolecule	VP2 (protein) VP3 (protein) Virion protein 1 (protein)

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7DPZ \| pdb_00007dpz	Download File View File

Cryo-EM structure of Coxsackievirus B1 virion in complex with CAR

Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q.

(2021) Cell Host Microbe 29: 448-462.e5

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Coxsackievirus B1 Homo sapiens
Macromolecule	Capsid protein VP4 (protein) Coxsackievirus and adenovirus receptor (protein) VP2 (protein) VP3 (protein) Virion protein 1 (protein)

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7DQ1 \| pdb_00007dq1	Download File View File

Cryo-EM structure of Coxsackievirus B1 virion in complex with CAR at physiological temperature

Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q.

(2021) Cell Host Microbe 29: 448-462.e5

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Coxsackievirus B1 Homo sapiens
Macromolecule	Capsid protein VP4 (protein) Coxsackievirus and adenovirus receptor (protein) VP2 (protein) VP3 (protein) Virion protein 1 (protein)

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7DQ4 \| pdb_00007dq4	Download File View File

Cryo-EM structure of CAR triggered Coxsackievirus B1 A-particle

Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q.

(2021) Cell Host Microbe 29: 448-462.e5

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.8 Å
Organisms	Coxsackievirus B1
Macromolecule	VP2 (protein) VP3 (protein) Virion protein 1 (protein)

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7DQ7 \| pdb_00007dq7	Download File View File

Cryo-EM structure of Coxsackievirus B1 mature virion in complex with nAb 5F5

Li, S., Zhu, R., Xu, L., Cheng, T., Zheng, Q.

(2021) Cell Host Microbe 29: 448-462.e5

Released	2021-05-05
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Coxsackievirus B1 Mus musculus
Macromolecule	Unique protein chains: 6
Unique Ligands	PLM

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7FBI \| pdb_00007fbi	Download File View File

Cryo-EM structure of EBV gB in complex with nAbs 3A3 and 3A5

Zheng, Q., Li, S., Zha, Z., Hong, J., Chen, Y., Zhang, X.

To be published

Released	2022-07-13
Method	ELECTRON MICROSCOPY 3.9 Å
Organisms	Oryctolagus cuniculus human gammaherpesvirus 4
Macromolecule	3A3 heavy chain (protein) 3A3 light chain (protein) 3A5 heavy chain (protein) 3A5 light chain (protein) Envelope glycoprotein B (protein)

1 to 25 of 103 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ZV7 | pdb_00001zv7

1ZV8 | pdb_00001zv8

1ZVA | pdb_00001zva

1ZVB | pdb_00001zvb

2B1F | pdb_00002b1f

2B22 | pdb_00002b22

2GUS | pdb_00002gus

2GUV | pdb_00002guv

2HY6 | pdb_00002hy6

3H8O | pdb_00003h8o

4FVB | pdb_00004fvb

4FVD | pdb_00004fvd

5ZHY | pdb_00005zhy

6ISU | pdb_00006isu

6LAT | pdb_00006lat

6LB0 | pdb_00006lb0

6LGL | pdb_00006lgl

6LGN | pdb_00006lgn

7DPF | pdb_00007dpf

7DPG | pdb_00007dpg

7DPZ | pdb_00007dpz

7DQ1 | pdb_00007dq1

7DQ4 | pdb_00007dq4

7DQ7 | pdb_00007dq7

7FBI | pdb_00007fbi