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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Keywords HAS EXACT PHRASE "STRUCTURAL GENOMICS"

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Search Summary

This query matches 2,631 Structures.

Refinements

Structure Determination Methodology

experimental (2,631)

Scientific Name of Source Organism

	Homo sapiens (174)
	Bacillus subtilis (112)
	Escherichia coli (107)
	Arabidopsis thaliana (69)
	Thermus thermophilus HB8 (69)
	Mus musculus (65)
	Agrobacterium fabrum str. C58 (49)
	Pseudomonas aeruginosa PAO1 (47)
	Haemophilus influenzae (44)
	Thermus thermophilus (43)

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Taxonomy

	Bacteria (1,878)
	Eukaryota (410)
	Archaea (315)
	other sequences (18)
	Duplodnaviria (4)
	Eukaryota (eukaryotes) (3)
	unclassified sequences (3)

Experimental Method

	X-RAY DIFFRACTION (2,052)
	SOLUTION NMR (579)
	SOLUTION SCATTERING (2)

Polymer Entity Type

Protein (2,631)

Refinement Resolution (Å)

	0.5 - 1.0 (3)
	1.0 - 1.5 (157)
	1.5 - 2.0 (797)
	2.0 - 2.5 (750)
	2.5 - 3.0 (306)
	3.0 - 3.5 (38)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (547)
	2005 - 2009 (1,502)
	2010 - 2014 (488)
	2015 - 2019 (69)
	2020 - 2024 (22)

Enzyme Classification Name

	Hydrolases (171)
	Transferases (129)
	Oxidoreductases (51)
	Lyases (52)
	Isomerases (30)
	Ligases (12)

Membrane Protein Annotation

	MemProtMD (12)
	PDBTM (12)
	OPM (6)
	mpstruc (5)

Symmetry Type

	Asymmetric (1,465)
	Cyclic (1,155)
	Dihedral (274)
	Tetrahedral (11)
	Octahedral (4)
	Helical (2)
	Icosahedral (1)

SCOP Classification

	Artifacts (614)
	Alpha and beta proteins (a+b) (611)
	Alpha and beta proteins (a/b) (468)
	All alpha proteins (251)
	All beta proteins (244)
	Multi-domain proteins (alpha and beta) (24)
	Small proteins (20)
	Membrane and cell surface proteins and peptides (3)
	Coiled coil proteins (1)
	Designed proteins (1)

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AllSelected

1 to 25 of 2,631 Structures

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1B78 \| pdb_00001b78	Download File View File

STRUCTURE-BASED IDENTIFICATION OF THE BIOCHEMICAL FUNCTION OF A HYPOTHETICAL PROTEIN FROM METHANOCOCCUS JANNASCHII:MJ0226

Hwang, K.Y., Chung, J.H., Han, Y.S., Kim, S.H., Cho, Y.

(1999) Nat Struct Biol 6: 691-696

Released	2000-01-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	PYROPHOSPHATASE (protein)

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1CT5 \| pdb_00001ct5	Download File View File

CRYSTAL STRUCTURE OF YEAST HYPOTHETICAL PROTEIN YBL036C-SELENOMET CRYSTAL

Eswaramoorthy, S., Swaminathan, S., Burley, S.K., New York SGX Research Center for Structural Genomics (NYSGXRC)

(2003) Acta Crystallogr D Biol Crystallogr 59: 127-135

Released	1999-09-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	PROTEIN (YEAST HYPOTHETICAL PROTEIN, SELENOMET) (protein)
Unique Ligands	PLP

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1D1R \| pdb_00001d1r	Download File View File

NMR SOLUTION STRUCTURE OF THE PRODUCT OF THE E. COLI YCIH GENE.

Cort, J.R., Koonin, E.V., Bash, P.A., Kennedy, M.A.

(1999) Nucleic Acids Res 27: 4018-4027

Released	1999-10-06
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	HYPOTHETICAL 11.4 KD PROTEIN YCIH IN PYRF-OSMB INTERGENIC REGION (protein)

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1DM9 \| pdb_00001dm9	Download File View File

HEAT SHOCK PROTEIN 15 KD

Staker, B.L., Korber, P., Bardwell, J.C.A., Saper, M.A.

(2000) EMBO J 19: 749-757

Released	2000-02-18
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli
Macromolecule	HYPOTHETICAL 15.5 KD PROTEIN IN MRCA-PCKA INTERGENIC REGION (protein)
Unique Ligands	SO4

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1DUS \| pdb_00001dus	Download File View File

MJ0882-A hypothetical protein from M. jannaschii

Hung, L., Huang, L., Kim, R., Kim, S.H., Berkeley Structural Genomics Center (BSGC)

(2002) J Struct Funct Genomics 2: 121-127

Released	2000-07-19
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	MJ0882 (protein)

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1EIW \| pdb_00001eiw	Download File View File

Solution structure of hypothetical protein MTH538 from Methanobacterium thermoautotrophicum

Cort, J.R., Arrowsmith, C.H., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

(2000) J Mol Biology 302: 189-203

Released	2000-09-06
Method	SOLUTION NMR
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	HYPOTHETICAL PROTEIN MTH538 (protein)

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1EO1 \| pdb_00001eo1	Download File View File

Solution structure of hypothetical protein MTH1175 from Methanobacterium thermoautotrophicum

Cort, J.R., Arrowsmith, C.H., Kennedy, M.A., Northeast Structural Genomics Consortium (NESG)

(2000) J Struct Funct Genomics 1: 15-25

Released	2000-12-20
Method	SOLUTION NMR
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	HYPOTHETICAL PROTEIN MTH1175 (protein)

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1EX2 \| pdb_00001ex2	Download File View File

CRYSTAL STRUCTURE OF BACILLUS SUBTILIS MAF PROTEIN

Minasov, G., Teplova, M., Stewart, G.C., Koonin, E.V., Anderson, W.F., Egli, M., Midwest Center for Structural Genomics (MCSG)

(2000) Proc Natl Acad Sci U S A 97: 6328-6333

Released	2000-06-14
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bacillus subtilis
Macromolecule	PROTEIN MAF (protein)
Unique Ligands	PO4
Unique branched monosaccharides	FRU, GLC

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1EXC \| pdb_00001exc	Download File View File

CRYSTAL STRUCTURE OF B. SUBTILIS MAF PROTEIN COMPLEXED WITH D-(UTP)

Minasov, G., Teplova, M., Stewart, G.C., Koonin, E.V., Anderson, W.F., Egli, M., Midwest Center for Structural Genomics (MCSG)

(2000) Proc Natl Acad Sci U S A 97: 6328-6333

Released	2000-06-14
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Bacillus subtilis
Macromolecule	PROTEIN MAF (protein)
Unique Ligands	DUT, NA

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1F3O \| pdb_00001f3o	Download File View File

Crystal structure of MJ0796 ATP-binding cassette

Yuan, Y.-R., Hunt, J.F.

(2001) J Biological Chem 276: 32313-32321

Released	2001-07-25
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN MJ0796 (protein)
Unique Ligands	ADP, MG

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1G6P \| pdb_00001g6p	Download File View File

SOLUTION NMR STRUCTURE OF THE COLD SHOCK PROTEIN FROM THE HYPERTHERMOPHILIC BACTERIUM THERMOTOGA MARITIMA

Kremer, W., Schuler, B., Harrieder, S., Geyer, M., Gronwald, W., Welker, C., Jaenicke, R., Kalbitzer, H.R.

(2001) Eur J Biochem 268: 2527-2539

Released	2001-11-07
Method	SOLUTION NMR
Organisms	Thermotoga maritima
Macromolecule	COLD SHOCK PROTEIN TMCSP (protein)

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1G6W \| pdb_00001g6w	Download File View File

CRYSTAL STRUCTURE OF THE GLOBULAR REGION OF THE PRION PROTEIN URE2 FROM THE YEAST SACCAROMYCES CEREVISIAE

Bousset, L., Belrhali, H., Janin, J., Melki, R., Morera, S.

(2001) Structure 9: 39-46

Released	2001-02-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	URE2 PROTEIN (protein)

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1G6Y \| pdb_00001g6y	Download File View File

CRYSTAL STRUCTURE OF THE GLOBULAR REGION OF THE PRION PROTEIN URE2 FROM YEAST SACCHAROMYCES CEREVISIAE

Bousset, L., Belrhali, H., Janin, J., Melki, R., Morera, S.

(2001) Structure 9: 39-46

Released	2001-02-21
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	URE2 PROTEIN (protein)

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1G9X \| pdb_00001g9x	Download File View File

CHARACTERIZATION OF THE TWINNING STRUCTURE OF MJ1267, AN ATP-BINDING CASSETTE OF AN ABC TRANSPORTER

Yuan, Y.-R., Hunt, J.F.

(2003) Acta Crystallogr D Biol Crystallogr 59: 225-238

Released	2003-02-11
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Methanocaldococcus jannaschii
Macromolecule	HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN (protein)
Unique Ligands	ADP, MG, MMC

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1I81 \| pdb_00001i81	Download File View File

CRYSTAL STRUCTURE OF A HEPTAMERIC LSM PROTEIN FROM METHANOBACTERIUM THERMOAUTOTROPHICUM

Collins, B.M., Harrop, S.J., Kornfeld, G.D., Dawes, I.W., Curmi, P.M.G., Mabbutt, B.C.

(2001) J Mol Biology 309: 915-923

Released	2001-03-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	PUTATIVE SNRNP SM-LIKE PROTEIN (protein)

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1I8F \| pdb_00001i8f	Download File View File

THE CRYSTAL STRUCTURE OF A HEPTAMERIC ARCHAEAL SM PROTEIN: IMPLICATIONS FOR THE EUKARYOTIC SNRNP CORE

Mura, C., Cascio, D., Sawaya, M.R., Eisenberg, D.

(2001) Proc Natl Acad Sci U S A 98: 5532-5537

Released	2001-05-16
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Pyrobaculum aerophilum
Macromolecule	PUTATIVE SNRNP SM-LIKE PROTEIN (protein)
Unique Ligands	GOL

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1IE0 \| pdb_00001ie0	Download File View File

CRYSTAL STRUCTURE OF LUXS

Hilgers, M.T., Ludwig, M.L.

(2001) Proc Natl Acad Sci U S A 98: 11169-11174

Released	2001-10-03
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Bacillus subtilis
Macromolecule	AUTOINDUCER-2 PRODUCTION PROTEIN LUXS (protein)
Unique Ligands	GOL, ZN

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1ILO \| pdb_00001ilo	Download File View File

NMR structure of a thioredoxin, MtH895, from the archeon Methanobacterium thermoautotrophicum strain delta H.

Bhattacharyya, S., Habibi-Nazhad, B., Slupsky, C.M., Sykes, B.D., Wishart, D.S., Northeast Structural Genomics Consortium (NESG)

(2002) Biochemistry 41: 4760-4770

Released	2001-11-14
Method	SOLUTION NMR
Organisms	Methanothermobacter thermautotrophicus str. Delta H
Macromolecule	conserved hypothetical protein MtH895 (protein)

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1J8C \| pdb_00001j8c	Download File View File

Solution Structure of the Ubiquitin-like Domain of hPLIC-2

Walters, K.J., Kleijnen, M.F., Goh, A.M., Wagner, G., Howley, P.M.

(2002) Biochemistry 41: 1767-1777

Released	2002-03-20
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	ubiquitin-like protein hPLIC-2 (protein)

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1JAX \| pdb_00001jax	Download File View File

Structure of Coenzyme F420H2:NADP+ Oxidoreductase (FNO)

Warkentin, E., Mamat, B., Thauer, R., Ermler, U., Shima, S.

(2001) EMBO J 20: 6561-6569

Released	2001-12-21
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	conserved hypothetical protein (protein)
Unique Ligands	MG, NA

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1JAY \| pdb_00001jay	Download File View File

Structure of Coenzyme F420H2:NADP+ Oxidoreductase (FNO) with its substrates bound

Warkentin, E., Mamat, B., Thauer, R., Ermler, U., Shima, S.

(2001) EMBO J 20: 6561-6569

Released	2001-12-21
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Archaeoglobus fulgidus
Macromolecule	Coenzyme F420H2:NADP+ Oxidoreductase (FNO) (protein)
Unique Ligands	F42, NA, NAP

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1JBM \| pdb_00001jbm	Download File View File

Heptameric crystal structure of Mth649, an Sm-like archaeal protein from Methanobacterium thermautotrophicum

Mura, C., Eisenberg, D.

(2003) Protein Sci 12: 832-847

Released	2003-03-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Methanothermobacter thermautotrophicus
Macromolecule	PUTATIVE SNRNP SM-LIKE PROTEIN (protein)
Unique Ligands	ACY, EDO