RCSB PDB: Search

1A3R \| pdb_00001a3r	Download File View File

FAB FRAGMENT (ANTIBODY 8F5) COMPLEXED WITH PEPTIDE FROM HUMAN RHINOVIRUS (SEROTYPE 2) VIRAL CAPSID PROTEIN VP2 (RESIDUES 156-170)

Tormo, J., Blaas, D., Fita, I.

(1994) EMBO J 13: 2247-2256

Released	1998-04-29
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Mus musculus rhinovirus A2
Macromolecule	HUMAN RHINOVIRUS CAPSID PROTEIN VP2 (protein) IGG2A 8F5 FAB (HEAVY CHAIN) (protein) IGG2A 8F5 FAB (LIGHT CHAIN) (protein)

Explore in 3D

1AFV \| pdb_00001afv	Download File View File

HIV-1 CAPSID PROTEIN (P24) COMPLEX WITH FAB25.3

Momany, C., Kovari, L.C., Prongay, A.J., Keller, W., Gitti, R.K., Lee, B.M., Gorbalenya, A.E., Tong, L., Mcclure, J., Ehrlich, L.S., Summers, M.F., Carter, C., Rossmann, M.G.

(1996) Nat Struct Biol 3: 763-770

Released	1997-08-20
Method	X-RAY DIFFRACTION 3.7 Å
Organisms	Human immunodeficiency virus 1 Mus musculus
Macromolecule	ANTIBODY FAB25.3 FRAGMENT (HEAVY CHAIN) (protein) ANTIBODY FAB25.3 FRAGMENT (LIGHT CHAIN) (protein) HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID PROTEIN (protein)
Unique Ligands	PB

Explore in 3D

1EO8 \| pdb_00001eo8	Download File View File

INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH A NEUTRALIZING ANTIBODY

Fleury, D., Gigant, B., Daniels, R.S., Skehel, J.J., Knossow, M., Bizebard, T.

(2000) Proteins 40: 572-578

Released	2000-04-12
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Influenza A virus (A/X-31(H3N2)) Mus musculus
Macromolecule	ANTIBODY (HEAVY CHAIN) (protein) ANTIBODY (LIGHT CHAIN) (protein) HEMAGGLUTININ (HA1 CHAIN) (protein) HEMAGGLUTININ (HA2 CHAIN) (protein)
Unique Ligands	NAG
Unique branched monosaccharides	MAN, NAG

Explore in 3D

1F58 \| pdb_00001f58	Download File View File

IGG1 FAB FRAGMENT (58.2) COMPLEX WITH 24-RESIDUE PEPTIDE (RESIDUES 308-333 OF HIV-1 GP120 (MN ISOLATE) WITH ALA TO AIB SUBSTITUTION AT POSITION 323

Stanfield, R.L., Cabezas, E., Satterthwait, A.C., Stura, E.A., Profy, A.T., Wilson, I.A.

(1999) Structure 7: 131-142

Released	1999-02-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	HIV-1 M:B_MN Mus musculus
Macromolecule	Envelope glycoprotein gp120 (protein) PROTEIN (IGG1 ANTIBODY 58.2 (HEAVY CHAIN)) (protein) PROTEIN (IGG1 ANTIBODY 58.2 (LIGHT CHAIN)) (protein)

Explore in 3D

1FRG \| pdb_00001frg	Download File View File

CRYSTAL STRUCTURE, SEQUENCE, AND EPITOPE MAPPING OF A PEPTIDE COMPLEX OF AN ANTI-INFLUENZA HA PEPTIDE ANTIBODY FAB 26(SLASH)9: FINE-TUNING ANTIBODY SPECIFICITY

Churchill, M.E.A., Wilson, I.A.

(1994) J Mol Biology 241: 534-556

Released	1994-05-31
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Influenza A virus Mus musculus
Macromolecule	IGG2A 26/9 FAB (HEAVY CHAIN) (protein) IGG2A 26/9 FAB (LIGHT CHAIN) (protein) INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 101 - 108) (protein)

Explore in 3D

1G9M \| pdb_00001g9m	Download File View File

HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B

Kwong, P.D., Wyatt, R., Majeed, S., Robinson, J., Sweet, R.W., Sodroski, J., Hendrickson, W.A.

(2000) Structure 8: 1329-1339

Released	2000-12-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ANTIBODY 17B, HEAVY CHAIN (protein) ANTIBODY 17B, LIGHT CHAIN (protein) ENVELOPE GLYCOPROTEIN GP120 (protein) T-CELL SURFACE GLYCOPROTEIN CD4 (protein)
Unique Ligands	IPA, NAG
Unique branched monosaccharides	FUC, NAG

Explore in 3D

1G9N \| pdb_00001g9n	Download File View File

HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B

Kwong, P.D., Wyatt, R., Majeed, S., Robinson, J., Sweet, R.W., Sodroski, J., Hendrickson, W.A.

(2000) Structure 8: 1329-1339

Released	2000-12-27
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ANTIBODY 17B, HEAVY CHAIN (protein) ANTIBODY 17B, LIGHT CHAIN (protein) ENVELOPE GLYCOPROTEIN GP120 (protein) T-CELL SURFACE GLYCOPROTEIN CD4 (protein)
Unique Ligands	NAG

Explore in 3D

1IM3 \| pdb_00001im3	Download File View File

Crystal Structure of the human cytomegalovirus protein US2 bound to the MHC class I molecule HLA-A2/tax

Gewurz, B.E., Gaudet, R., Tortorella, D., Wang, E.W., Ploegh, H.L., Wiley, D.C.

(2001) Proc Natl Acad Sci U S A 98: 6794-6799

Released	2001-06-06
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Human T-cell leukemia virus 1 (isolate Caribbea HS-35 subtype A) Human betaherpesvirus 5
Macromolecule	HLA CLASS I HISTOCOMPATIBILITY ANTIGEN, A-2 ALPHA CHAIN (protein) Human T-cell lymphotropic virus type 1 Tax peptide (protein) beta-2-microglobulin (protein) cytomegalovirus protein US2 (protein)

Explore in 3D

1KEN \| pdb_00001ken	Download File View File

INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH AN ANTIBODY THAT PREVENTS THE HEMAGGLUTININ LOW PH FUSOGENIC TRANSITION

Barbey-Martin, C., Gigant, B., Bizebard, T., Calder, L.J., Wharto, S.A., Skehel, J.J., Knossow, M.

(2002) Virology 294: 70-74

Released	2002-04-24
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Influenza A virus (A/X-31(H3N2)) Mus musculus
Macromolecule	hemagglutinin HA1 (protein) hemagglutinin HA2 (protein) influenza virus infectivity neutralizing antibody (heavy chain) (protein) influenza virus infectivity neutralizing antibody (light chain) (protein)
Unique branched monosaccharides	MAN, NAG

Explore in 3D

1KG0 \| pdb_00001kg0	Download File View File

Structure of the Epstein-Barr Virus gp42 Protein Bound to the MHC class II Receptor HLA-DR1

Mullen, M.M., Haan, K.M., Longnecker, R., Jardetzky, T.S.

(2002) Mol Cell 9: 375-385

Released	2002-03-27
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens human gammaherpesvirus 4 synthetic construct
Macromolecule	Hemagglutinin HA Peptide (protein) MHC class II Receptor HLA-DR1 (protein) gp42 Protein (protein)

Explore in 3D

1PQZ \| pdb_00001pqz	Download File View File

MURINE CYTOMEGALOVIRUS IMMUNOMODULATORY PROTEIN M144

Miley, M.J., Fremont, D.H., Midwest Center for Structural Genomics (MCSG)

To be published

Released	2004-07-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Murid betaherpesvirus 1 Mus musculus
Macromolecule	Beta-2-microglobulin (protein) MCMV M144 (protein)

Explore in 3D

1QFU \| pdb_00001qfu	Download File View File

INFLUENZA VIRUS HEMAGGLUTININ COMPLEXED WITH A NEUTRALIZING ANTIBODY

Fleury, D., Gigant, B., Bizebard, T., Daniels, R.S., Skehel, J.J., Knossow, M.

(1999) Nat Struct Biol 6: 530-534

Released	1999-04-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Influenza A virus (A/X-31(H3N2)) Mus musculus
Macromolecule	PROTEIN (HEMAGGLUTININ (HA1 CHAIN)) (protein) PROTEIN (HEMAGGLUTININ (HA2 CHAIN)) (protein) PROTEIN (IMMUNOGLOBULIN IGG1-KAPPA ANTIBODY (HEAVY CHAIN)) (protein) PROTEIN (IMMUNOGLOBULIN IGG1-KAPPA ANTIBODY (LIGHT CHAIN)) (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, NAG, NDG

Explore in 3D

1RZJ \| pdb_00001rzj	Download File View File

HIV-1 HXBC2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B

Huang, C.C., Venturi, M., Majeed, S., Moore, M.J., Phogat, S., Zhang, M.-Y., Dimitrov, D.S., Hendrickson, W.A., Robinson, J., Sodroski, J., Wyatt, R., Choe, H., Farzan, M., Kwong, P.D.

(2004) Proc Natl Acad Sci U S A 101: 2706-2711

Released	2004-02-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ANTIBODY 17B, HEAVY CHAIN (protein) ANTIBODY 17B, LIGHT CHAIN (protein) ENVELOPE GLYCOPROTEIN GP120 (protein) T-CELL SURFACE GLYCOPROTEIN CD4 (protein)
Unique Ligands	IPA, NAG
Unique branched monosaccharides	FUC, NAG

Explore in 3D

1RZK \| pdb_00001rzk	Download File View File

HIV-1 YU2 GP120 ENVELOPE GLYCOPROTEIN COMPLEXED WITH CD4 AND INDUCED NEUTRALIZING ANTIBODY 17B

Huang, C.C., Venturi, M., Majeed, S., Moore, M.J., Phogat, S., Zhang, M.-Y., Dimitrov, D.S., Hendrickson, W.A., Robinson, J., Sodroski, J., Wyatt, R., Choe, H., Farzan, M., Kwong, P.D.

(2004) Proc Natl Acad Sci U S A 101: 2706-2711

Released	2004-02-03
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ANTIBODY 17B, HEAVY CHAIN (protein) ANTIBODY 17B, LIGHT CHAIN (protein) ENVELOPE GLYCOPROTEIN GP120 (protein) T-CELL SURFACE GLYCOPROTEIN CD4 (protein)
Unique Ligands	NAG

Explore in 3D

1TJG \| pdb_00001tjg	Download File View File

Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 7mer epitope

Ofek, G., Tang, M., Sambor, A., Katinger, H., Mascola, J.R., Wyatt, R., Kwong, P.D.

(2004) J Virol 78: 10724-10737

Released	2004-10-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1
Macromolecule	Envelope glycoprotein GP41 (protein) FAB 2F5 Heavy Chain (protein) FAB 2F5 Light Chain (protein)
Unique Ligands	EDO, IPA

Explore in 3D

1TJH \| pdb_00001tjh	Download File View File

Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 11mer epitope

Ofek, G., Tang, M., Sambor, A., Katinger, H., Mascola, J.R., Wyatt, R., Kwong, P.D.

(2004) J Virol 78: 10724-10737

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 group M subtype D (isolate Z6)
Macromolecule	Envelope glycoprotein GP41 (protein) anti-HIV-1 antibody 2F5 Heavy Chain (protein) anti-HIV-1 antibody 2F5 Light Chain (protein)
Unique Ligands	EDO, IPA

Explore in 3D

1TJI \| pdb_00001tji	Download File View File

Crystal Structure of the broadly neutralizing anti-HIV-1 antibody 2F5 in complex with a gp41 17mer epitope

Ofek, G., Tang, M., Sambor, A., Katinger, H., Mascola, J.R., Wyatt, R., Kwong, P.D.

(2004) J Virol 78: 10724-10737

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Human immunodeficiency virus type 1 group M subtype D (isolate Z6)
Macromolecule	Envelope Glycoprotein GP41 (protein) anti-HIV-1 antibody 2F5 Heavy Chain (protein) anti-HIV-1 antibody 2F5 Light Chain (protein)
Unique Ligands	EDO, IPA

Explore in 3D

1YYL \| pdb_00001yyl	Download File View File

crystal structure of CD4M33, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b

Huang, C.C., Stricher, F., Martin, L., Decker, J.M., Majeed, S., Barthe, P., Hendrickson, W.A., Robinson, J., Roumestand, C., Sodroski, J., Wyatt, R., Shaw, G.M., Vita, C., Kwong, P.D.

(2005) Structure 13: 755-768

Released	2005-05-03
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 synthetic construct
Macromolecule	CD4M33, scorpion-toxin mimic of CD4 (protein) Exterior membrane glycoprotein(GP120),Exterior membrane glycoprotein(GP120),Exterior membrane glycoprotein(GP120) (protein) antibody 17b heavy chain (protein) antibody 17b light chain (protein)
Unique Ligands	NAG

Explore in 3D

1YYM \| pdb_00001yym	Download File View File

crystal structure of F23, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 gp120 envelope glycoprotein and anti-HIV-1 antibody 17b

Huang, C.C., Stricher, F., Martin, L., Decker, J.M., Majeed, S., Barthe, P., Hendrickson, W.A., Robinson, J., Roumestand, C., Sodroski, J., Wyatt, R., Shaw, G.M., Vita, C., Kwong, P.D.

(2005) Structure 13: 755-768

Released	2005-05-03
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 synthetic construct
Macromolecule	Exterior membrane glycoprotein(GP120),Exterior membrane glycoprotein(GP120),Exterior membrane glycoprotein(GP120) (protein) F23, scorpion-toxin mimic of CD4 (protein) antibody 17b heavy chain (protein) antibody 17b light chain (protein)
Unique Ligands	EDO, IPA, NAG

Explore in 3D

1ZTX \| pdb_00001ztx	Download File View File

West Nile Virus Envelope Protein DIII in complex with neutralizing E16 antibody Fab

Nybakken, G.E., Oliphant, T., Diamond, M.S., Fremont, D.H.

(2005) Nature 437: 764-769

Released	2005-10-04
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Mus musculus West Nile virus
Macromolecule	Envelope protein (protein) Heavy Chain of E16 Antibody (protein) Light Chain of E16 Antibody (protein)

Explore in 3D

2B4C \| pdb_00002b4c	Download File View File

Crystal structure of HIV-1 JR-FL gp120 core protein containing the third variable region (V3) complexed with CD4 and the X5 antibody

Huang, C., Tang, M., Zhang, M.Y., Majeed, S., Montabana, E., Stanfield, R.L., Dimitrov, D.S., Korber, B., Sodroski, J., Wilson, I.A., Wyatt, R., Kwong, P.D.

(2005) Science 310: 1025-1028

Released	2005-11-15
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	T-cell surface glycoprotein CD4 (protein) anti-HIV-1 gp120 immunoglobulin X5 heavy chain (protein) anti-HIV-1 gp120 immunoglobulin X5 light chain (protein) envelope glycoprotein (protein)
Unique Ligands	NAG, SO4, XYL
Unique branched monosaccharides	FUC, NAG

Explore in 3D

2I5Y \| pdb_00002i5y	Download File View File

Crystal structure of CD4M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B

Huang, C.-C., Kwong, P.D.

(2008) J Mol Biology 382: 510-524

Released	2006-10-10
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Human immunodeficiency virus synthetic construct
Macromolecule	Antibody 17B Heavy chain (protein) Antibody 17B Light chain (protein) CD4M47, SCORPION-TOXIN MIMIC OF CD4 (protein) Exterior membrane glycoprotein(GP120) (protein)
Unique Ligands	NAG

Explore in 3D

2I60 \| pdb_00002i60	Download File View File

Crystal structure of [Phe23]M47, a scorpion-toxin mimic of CD4, in complex with HIV-1 YU2 GP120 envelope glycoprotein and anti-HIV-1 antibody 17B

Huang, C.-C., Kwong, P.D.

(2008) J Mol Biology 382: 510-524

Released	2006-10-10
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens Human immunodeficiency virus 1 synthetic construct
Macromolecule	ANTIBODY 17B HEAVY CHAIN (protein) ANTIBODY 17B LIGHT CHAIN (protein) EXTERIOR MEMBRANE GLYCOPROTEIN(GP120) (protein) [PHE23]M47, SCORPION-TOXIN MIMIC OF CD4 (protein)
Unique Ligands	IPA, NAG

Explore in 3D

2KXA \| pdb_00002kxa	Download File View File

The hemagglutinin fusion peptide (H1 subtype) at pH 7.4

Lorieau, J.L., Louis, J.M., Bax, A.

(2010) Proc Natl Acad Sci U S A 107: 11341-11346

Released	2010-06-23
Method	SOLUTION NMR
Organisms	Influenza A virus (A/swine/Scotland/410440/94(H1N2))
Macromolecule	Haemagglutinin HA2 CHAIN PEPTIDE (protein)

Explore in 3D

2NXY \| pdb_00002nxy	Download File View File

HIV-1 gp120 Envelope Glycoprotein(S334A) Complexed with CD4 and Antibody 17b

Zhou, T., Xu, L., Dey, B., Hessell, A.J., Van Ryk, D., Xiang, S.H., Yang, X., Zhang, M.Y., Zwick, M.B., Arthos, J., Burton, D.R., Dimitrov, D.S., Sodroski, J., Wyatt, R., Nabel, G.J., Kwong, P.D.

(2007) Nature 445: 732-737

Released	2007-02-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens Human immunodeficiency virus 1
Macromolecule	ANTIBODY 17B, HEAVY CHAIN (protein) ANTIBODY 17B, LIGHT CHAIN (protein) ENVELOPE GLYCOPROTEIN GP120 (protein) T-cell surface glycoprotein CD4 (protein)
Unique Ligands	HEZ, NAG, TRS

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1A3R | pdb_00001a3r

1AFV | pdb_00001afv

1EO8 | pdb_00001eo8

1F58 | pdb_00001f58

1FRG | pdb_00001frg

1G9M | pdb_00001g9m

1G9N | pdb_00001g9n

1IM3 | pdb_00001im3

1KEN | pdb_00001ken

1KG0 | pdb_00001kg0

1PQZ | pdb_00001pqz

1QFU | pdb_00001qfu

1RZJ | pdb_00001rzj

1RZK | pdb_00001rzk

1TJG | pdb_00001tjg

1TJH | pdb_00001tjh

1TJI | pdb_00001tji

1YYL | pdb_00001yyl

1YYM | pdb_00001yym

1ZTX | pdb_00001ztx

2B4C | pdb_00002b4c

2I5Y | pdb_00002i5y

2I60 | pdb_00002i60

2KXA | pdb_00002kxa

2NXY | pdb_00002nxy